RNA–Protein interactions for RNA: ENST00000583821.1

MSI2-218, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 548 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-218	ENST00000583821	RIOK3	O14730	519 aa	Known RBP	11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	GNPAT	O15228	680 aa		11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	PSEN1	P49768	467 aa		11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	AEBP1	Q8IUX7	1158 aa		11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	IFNL2	Q8IZJ0	200 aa		11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	BRCA1	P38398	1863 aa	Known RBP	11.12	□□□□□ -0.63
MSI2-218	ENST00000583821	TIE1	P35590	1138 aa		11.11	□□□□□ -0.63
MSI2-218	ENST00000583821	FLAD1	Q8NFF5	587 aa		11.11	□□□□□ -0.63
MSI2-218	ENST00000583821	SLC4A9	Q96Q91	983 aa		11.11	□□□□□ -0.63
MSI2-218	ENST00000583821	ATG3	Q9NT62	314 aa		11.11	□□□□□ -0.63
MSI2-218	ENST00000583821	ATP10D	Q9P241	1426 aa		11.1	□□□□□ -0.63
MSI2-218	ENST00000583821	ATP6V1A	P38606	617 aa		11.1	□□□□□ -0.63
MSI2-218	ENST00000583821	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.1	□□□□□ -0.63
MSI2-218	ENST00000583821	CCER1	Q8TC90	406 aa	Predicted RBP	11.1	□□□□□ -0.63
MSI2-218	ENST00000583821	ADAMTS7	Q9UKP4	1686 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	SENP3-EIF4A1	A0A087X0R7	540 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	SSFA2	P28290	1259 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	C1QTNF8	P60827	252 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	MORC1	Q86VD1	984 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	CD2AP	Q9Y5K6	639 aa		11.09	□□□□□ -0.63
MSI2-218	ENST00000583821	PLEKHG2	Q9H7P9	1386 aa		11.08	□□□□□ -0.64
MSI2-218	ENST00000583821	TRIM35	Q9UPQ4	493 aa		11.08	□□□□□ -0.64
MSI2-218	ENST00000583821	PXDNL	A1KZ92	1463 aa		11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	ADCY9	O60503	1353 aa		11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	GRIN3B	O60391	1043 aa		11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	GIGYF1	O75420	1035 aa	Predicted RBP	11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	PDAP1	Q13442	181 aa	Known RBP	11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	ZFP91	Q96JP5	570 aa	Predicted RBP	11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	ARFGEF1	Q9Y6D6	1849 aa		11.07	□□□□□ -0.64
MSI2-218	ENST00000583821	UBR2	Q8IWV8	1755 aa		11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	ERVV-2	B6SEH9	535 aa		11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	MMP10	P09238	476 aa		11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	DCAF5	Q96JK2	942 aa		11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	AFDN	P55196	1824 aa	Known RBP	11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	C10orf71	Q711Q0	1435 aa		11.06	□□□□□ -0.64
MSI2-218	ENST00000583821	CABP4	P57796	275 aa		11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	SULT6B1	Q6IMI4	303 aa		11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	ZNF526	Q8TF50	670 aa	Predicted RBP	11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	SIPA1L3	O60292	1781 aa	Predicted RBP	11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	MRC1	P22897	1456 aa		11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	KIF7	Q2M1P5	1343 aa		11.05	□□□□□ -0.64
MSI2-218	ENST00000583821	PTCD1	O75127	700 aa	Known RBP	11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	HSP90AB1	P08238	724 aa	Known RBP	11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	HMGB2	P26583	209 aa	Known RBP	11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	IL13	P35225	146 aa		11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	KNSTRN	Q9Y448	316 aa		11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	CNTNAP4	Q9C0A0	1308 aa		11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	KCP	Q6ZWJ8	1503 aa		11.04	□□□□□ -0.64
MSI2-218	ENST00000583821	MTHFS	P49914	203 aa		11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	AMOT	Q4VCS5	1084 aa		11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	C1orf141	Q5JVX7	400 aa		11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	ARHGEF1	Q92888	912 aa	Known RBP	11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	SRP68	Q9UHB9	627 aa	Known RBP	11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	RTCB	Q9Y3I0	505 aa	Known RBP	11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	COL3A1	P02461	1466 aa	Predicted RBP	11.03	□□□□□ -0.64
MSI2-218	ENST00000583821	HMOX1	P09601	288 aa		11.02	□□□□□ -0.65
MSI2-218	ENST00000583821	GYS1	P13807	737 aa		11.02	□□□□□ -0.65
MSI2-218	ENST00000583821	TRAPPC3L	Q5T215	181 aa		11.02	□□□□□ -0.65
MSI2-218	ENST00000583821	NFATC2IP	Q8NCF5	419 aa		11.02	□□□□□ -0.65
MSI2-218	ENST00000583821	DLEC1	Q9Y238	1755 aa		11.02	□□□□□ -0.65
MSI2-218	ENST00000583821		A0A0G2JLW4	131 aa		11.01	□□□□□ -0.65
MSI2-218	ENST00000583821	RPS6KA4	O75676	772 aa		11.01	□□□□□ -0.65
MSI2-218	ENST00000583821	CRKL	P46109	303 aa	Known RBP	11.01	□□□□□ -0.65
MSI2-218	ENST00000583821	CNGB1	Q14028	1251 aa	Predicted RBP	11.01	□□□□□ -0.65
MSI2-218	ENST00000583821	RC3H1	Q5TC82	1133 aa	Known RBP	11.01	□□□□□ -0.65
MSI2-218	ENST00000583821	SBF1	O95248	1867 aa		11	□□□□□ -0.65
MSI2-218	ENST00000583821	POTEF	A5A3E0	1075 aa		11	□□□□□ -0.65
MSI2-218	ENST00000583821	CC2D1B	Q5T0F9	858 aa	Known RBP	11	□□□□□ -0.65
MSI2-218	ENST00000583821	LGR6	Q9HBX8	967 aa		11	□□□□□ -0.65
MSI2-218	ENST00000583821	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11	□□□□□ -0.65
MSI2-218	ENST00000583821	NRXN2	Q9P2S2	1712 aa		11	□□□□□ -0.65
MSI2-218	ENST00000583821	SCN7A	Q01118	1682 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	DPEP1	P16444	411 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	RFC4	P35249	363 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	DDR1	Q08345	913 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	METRN	Q9UJH8	293 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	COLQ	Q9Y215	455 aa	Predicted RBP	10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	BCS1L	Q9Y276	419 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	CACNA1S	Q13698	1873 aa		10.99	□□□□□ -0.65
MSI2-218	ENST00000583821	CCDC88A	Q3V6T2	1871 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	ANKRD31	Q8N7Z5	1873 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	SLC39A6	Q13433	755 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	AKAP4	Q5JQC9	854 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	INTS5	Q6P9B9	1019 aa	Known RBP	10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	DNAJC10	Q8IXB1	793 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	NLGN1	Q8N2Q7	840 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	SLC52A2	Q9HAB3	445 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	CCDC87	Q9NVE4	849 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	PARP3	Q9Y6F1	533 aa		10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	USP42	Q9H9J4	1324 aa	Known RBP	10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	COL11A2	P13942	1736 aa	Predicted RBP	10.98	□□□□□ -0.65
MSI2-218	ENST00000583821	POTEB2	H3BUK9	544 aa		10.97	□□□□□ -0.65
MSI2-218	ENST00000583821	PER1	O15534	1290 aa	Predicted RBP	10.97	□□□□□ -0.65
MSI2-218	ENST00000583821	RNMT	O43148	476 aa	Known RBP	10.97	□□□□□ -0.65
MSI2-218	ENST00000583821	MTHFSD	Q2M296	383 aa	Known RBP	10.97	□□□□□ -0.65
MSI2-218	ENST00000583821	TIAM2	Q8IVF5	1701 aa		10.97	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms