RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 MTHFSDQ2M296 383 aaKnown RBP13.14□□□□□ -0.31
CRLF3-202ENST00000577725 NGEFQ8N5V2 710 aa13.14□□□□□ -0.31
CRLF3-202ENST00000577725 CNTNAP1P78357 1384 aa13.14□□□□□ -0.31
CRLF3-202ENST00000577725 C5P01031 1676 aa13.14□□□□□ -0.31
CRLF3-202ENST00000577725 FAM208AQ9UK61 1670 aaKnown RBP13.14□□□□□ -0.31
CRLF3-202ENST00000577725 ZC3H4Q9UPT8 1303 aaKnown RBP13.13□□□□□ -0.31
CRLF3-202ENST00000577725 KAT6BQ8WYB5 2073 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 DCTN1Q14203 1278 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 SMIM5Q71RC9 77 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 AMIGO3Q86WK7 504 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 WBP1LQ9NX94 342 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 NCAPD2Q15021 1401 aa13.13□□□□□ -0.31
CRLF3-202ENST00000577725 MMP10P09238 476 aa13.12□□□□□ -0.31
CRLF3-202ENST00000577725 DPEP1P16444 411 aa13.12□□□□□ -0.31
CRLF3-202ENST00000577725 SSFA2P28290 1259 aa13.12□□□□□ -0.31
CRLF3-202ENST00000577725 DUSP27Q5VZP5 1158 aa13.12□□□□□ -0.31
CRLF3-202ENST00000577725 DOT1LQ8TEK3 1739 aa13.12□□□□□ -0.31
CRLF3-202ENST00000577725 KIAA1551Q9HCM1 1747 aa13.11□□□□□ -0.31
CRLF3-202ENST00000577725 HSPA8P11142 646 aaKnown RBP13.11□□□□□ -0.31
CRLF3-202ENST00000577725 WDR63Q8IWG1 891 aa13.11□□□□□ -0.31
CRLF3-202ENST00000577725 GLTPD2A6NH11 291 aa13.1□□□□□ -0.31
CRLF3-202ENST00000577725 E9PSI1 815 aa13.1□□□□□ -0.31
CRLF3-202ENST00000577725 MCM10Q7L590 875 aa13.1□□□□□ -0.31
CRLF3-202ENST00000577725 DCAF5Q96JK2 942 aa13.1□□□□□ -0.31
CRLF3-202ENST00000577725 SUPT16HQ9Y5B9 1047 aaKnown RBP13.1□□□□□ -0.31
CRLF3-202ENST00000577725 PALLDQ8WX93 1383 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 MEGF6O75095 1541 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 FKBP8Q14318 412 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 TRMT2AQ8IZ69 625 aaKnown RBP13.09□□□□□ -0.31
CRLF3-202ENST00000577725 GAS2L2Q8NHY3 880 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 LAS1LQ9Y4W2 734 aaKnown RBP13.09□□□□□ -0.31
CRLF3-202ENST00000577725 KIF13BQ9NQT8 1826 aa13.09□□□□□ -0.31
CRLF3-202ENST00000577725 C4BP0C0L5 1744 aa13.08□□□□□ -0.32
CRLF3-202ENST00000577725 N4BP2Q86UW6 1770 aaPredicted RBP13.08□□□□□ -0.32
CRLF3-202ENST00000577725 VEGFBP49765 207 aa13.08□□□□□ -0.32
CRLF3-202ENST00000577725 LMOD3Q0VAK6 560 aa13.08□□□□□ -0.32
CRLF3-202ENST00000577725 ZNF530Q6P9A1 599 aaPredicted RBP13.08□□□□□ -0.32
CRLF3-202ENST00000577725 TSR2Q969E8 191 aaKnown RBP13.08□□□□□ -0.32
CRLF3-202ENST00000577725 PIM2Q9P1W9 311 aa13.08□□□□□ -0.32
CRLF3-202ENST00000577725 TOGARAM1Q9Y4F4 1720 aa13.08□□□□□ -0.32
CRLF3-202ENST00000577725 TATP17735 454 aaPredicted RBP13.07□□□□□ -0.32
CRLF3-202ENST00000577725 KCNA3P22001 575 aa13.07□□□□□ -0.32
CRLF3-202ENST00000577725 PLEKHO1Q53GL0 409 aaPredicted RBP13.07□□□□□ -0.32
CRLF3-202ENST00000577725 DALRD3Q5D0E6 543 aaKnown RBP13.07□□□□□ -0.32
CRLF3-202ENST00000577725 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
CRLF3-202ENST00000577725 GTF3C3Q9Y5Q9 886 aa13.07□□□□□ -0.32
CRLF3-202ENST00000577725 FANCIQ9NVI1 1328 aa13.07□□□□□ -0.32
CRLF3-202ENST00000577725 IRX6P78412 446 aaPredicted RBP13.06□□□□□ -0.32
CRLF3-202ENST00000577725 ZCRB1Q8TBF4 217 aaKnown RBP13.06□□□□□ -0.32
CRLF3-202ENST00000577725 RAPGEF4Q8WZA2 1011 aa13.06□□□□□ -0.32
CRLF3-202ENST00000577725 IL16Q14005 1332 aa13.06□□□□□ -0.32
CRLF3-202ENST00000577725 TNRC18O15417 2968 aaPredicted RBP13.05□□□□□ -0.32
CRLF3-202ENST00000577725 CHADLQ6NUI6 762 aa13.05□□□□□ -0.32
CRLF3-202ENST00000577725 RTF1Q92541 710 aaKnown RBP13.05□□□□□ -0.32
CRLF3-202ENST00000577725 MYH16Q9H6N6 1097 aa13.05□□□□□ -0.32
CRLF3-202ENST00000577725 RCAN3Q9UKA8 241 aa13.05□□□□□ -0.32
CRLF3-202ENST00000577725 VIRMAQ69YN4 1812 aaKnown RBP13.04□□□□□ -0.32
CRLF3-202ENST00000577725 GNAT3A8MTJ3 354 aa13.04□□□□□ -0.32
CRLF3-202ENST00000577725 MAP2K1Q02750 393 aaPredicted RBP13.04□□□□□ -0.32
CRLF3-202ENST00000577725 NLGN1Q8N2Q7 840 aa13.04□□□□□ -0.32
CRLF3-202ENST00000577725 KDM6AO15550 1401 aaPredicted RBP13.04□□□□□ -0.32
CRLF3-202ENST00000577725 POTECB2RU33 542 aa13.03□□□□□ -0.32
CRLF3-202ENST00000577725 EXOSC9Q06265 439 aaKnown RBP13.03□□□□□ -0.32
CRLF3-202ENST00000577725 AMOTQ4VCS5 1084 aa13.03□□□□□ -0.32
CRLF3-202ENST00000577725 PRPF38BQ5VTL8 546 aaKnown RBP13.03□□□□□ -0.32
CRLF3-202ENST00000577725 IL17REQ8NFR9 667 aa13.03□□□□□ -0.32
CRLF3-202ENST00000577725 SMARCC1Q92922 1105 aaPredicted RBP13.03□□□□□ -0.32
CRLF3-202ENST00000577725 TAF1LQ8IZX4 1826 aa13.02□□□□□ -0.32
CRLF3-202ENST00000577725 ARFGEF1Q9Y6D6 1849 aa13.02□□□□□ -0.32
CRLF3-202ENST00000577725 UBR3Q6ZT12 1888 aa13.02□□□□□ -0.32
CRLF3-202ENST00000577725 ZNF853P0CG23 659 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 LMNB1P20700 586 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 CALD1Q05682 793 aaKnown RBP13.02□□□□□ -0.33
CRLF3-202ENST00000577725 C1orf141Q5JVX7 400 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 MPRIPQ6WCQ1 1025 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 LGR6Q9HBX8 967 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 MBIPQ9NS73 344 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 IFT57Q9NWB7 429 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 MIS18AQ9NYP9 233 aa13.02□□□□□ -0.33
CRLF3-202ENST00000577725 GNPATO15228 680 aa13.01□□□□□ -0.33
CRLF3-202ENST00000577725 GNAI1P63096 354 aa13.01□□□□□ -0.33
CRLF3-202ENST00000577725 AKAP4Q5JQC9 854 aa13.01□□□□□ -0.33
CRLF3-202ENST00000577725 BRCA1P38398 1863 aaKnown RBP13.01□□□□□ -0.33
CRLF3-202ENST00000577725 PASKQ96RG2 1323 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 TMEM88BA6NKF7 163 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 RNMTO43148 476 aaKnown RBP13□□□□□ -0.33
CRLF3-202ENST00000577725 HTATSF1O43719 755 aaKnown RBP13□□□□□ -0.33
CRLF3-202ENST00000577725 RASSF7Q02833 373 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 DPY19L2Q6NUT2 758 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 SPG7Q9UQ90 795 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 PARP3Q9Y6F1 533 aa13□□□□□ -0.33
CRLF3-202ENST00000577725 PLIN1O60240 522 aa12.99□□□□□ -0.33
CRLF3-202ENST00000577725 NEFLP07196 543 aa12.99□□□□□ -0.33
CRLF3-202ENST00000577725 PHKG2P15735 406 aa12.99□□□□□ -0.33
CRLF3-202ENST00000577725 RRP1P56182 461 aaKnown RBP12.99□□□□□ -0.33
CRLF3-202ENST00000577725 LINC00116Q8NCU8 138 aa12.99□□□□□ -0.33
CRLF3-202ENST00000577725 CHL1O00533 1208 aa12.98□□□□□ -0.33
CRLF3-202ENST00000577725 CYP27B1O15528 508 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms