RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 TOM1L2Q6ZVM7 507 aa8.4□□□□□ -1.06
SMG6-217ENST00000575338 FMNL2Q96PY5 1086 aa8.4□□□□□ -1.06
SMG6-217ENST00000575338 LRRCC1Q9C099 1032 aa8.4□□□□□ -1.06
SMG6-217ENST00000575338 OSBPL3Q9H4L5 887 aa8.4□□□□□ -1.06
SMG6-217ENST00000575338 CHPF2Q9P2E5 772 aa8.4□□□□□ -1.06
SMG6-217ENST00000575338 KDM6AO15550 1401 aaPredicted RBP8.39□□□□□ -1.07
SMG6-217ENST00000575338 WNK3Q9BYP7 1800 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 ERVV-2B6SEH9 535 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 REC8O95072 547 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 SNRPA1P09661 255 aaKnown RBP8.39□□□□□ -1.07
SMG6-217ENST00000575338 RBM25P49756 843 aaKnown RBP8.39□□□□□ -1.07
SMG6-217ENST00000575338 MFAP1P55081 439 aaKnown RBP8.39□□□□□ -1.07
SMG6-217ENST00000575338 CABP4P57796 275 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 EVA1CP58658 441 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 LARP1Q6PKG0 1096 aaKnown RBP8.39□□□□□ -1.07
SMG6-217ENST00000575338 ERC1Q8IUD2 1116 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 NECTIN2Q92692 538 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 CARD10Q9BWT7 1032 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 ARFGEF2Q9Y6D5 1785 aa8.39□□□□□ -1.07
SMG6-217ENST00000575338 SHANK3Q9BYB0 1731 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 ROBO1Q9Y6N7 1651 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 PI4KAP2A4QPH2 592 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 EPB41L2O43491 1005 aaKnown RBP8.38□□□□□ -1.07
SMG6-217ENST00000575338 IL2RBP14784 551 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 BEND3Q5T5X7 828 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 PLEKHM2Q8IWE5 1019 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 HSCBQ8IWL3 235 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 PI4KAP1Q8N8J0 262 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 LINS1Q8NG48 757 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 ZCRB1Q8TBF4 217 aaKnown RBP8.38□□□□□ -1.07
SMG6-217ENST00000575338 SSH3Q8TE77 659 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 KIF1BPQ96EK5 621 aa8.38□□□□□ -1.07
SMG6-217ENST00000575338 C9orf78Q9NZ63 289 aaPredicted RBP8.38□□□□□ -1.07
SMG6-217ENST00000575338 MTX1Q13505 466 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 CHRNA2Q15822 529 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 CERKQ8TCT0 537 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 CABLES1Q8TDN4 633 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 DDX17Q92841 729 aaKnown RBP8.37□□□□□ -1.07
SMG6-217ENST00000575338 GPATCH3Q96I76 525 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 USP44Q9H0E7 712 aa8.37□□□□□ -1.07
SMG6-217ENST00000575338 PHAXQ9H814 394 aaKnown RBP8.37□□□□□ -1.07
SMG6-217ENST00000575338 LRRFIP2Q9Y608 721 aaKnown RBP8.37□□□□□ -1.07
SMG6-217ENST00000575338 LRP6O75581 1613 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 SEC24BO95487 1268 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 MCCP23508 829 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 POLA2Q14181 598 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 NKX1-1Q15270 411 aaPredicted RBP8.36□□□□□ -1.07
SMG6-217ENST00000575338 TBC1D9Q6ZT07 1266 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 RIC3Q7Z5B4 369 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 NFATC2IPQ8NCF5 419 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 SNX21Q969T3 373 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 MAP3K2Q9Y2U5 619 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 ITGB4P16144 1822 aa8.36□□□□□ -1.07
SMG6-217ENST00000575338 ADCY9O60503 1353 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 UTYO14607 1347 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 PHLPP1O60346 1717 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 GRM8O00222 908 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 ERC2O15083 957 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 CYP27B1O15528 508 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 SRGAP3O43295 1099 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 MX1P20591 662 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 PDE1AP54750 535 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 CDCA7Q9BWT1 371 aaPredicted RBP8.35□□□□□ -1.07
SMG6-217ENST00000575338 TEX13AQ9BXU3 409 aaPredicted RBP8.35□□□□□ -1.07
SMG6-217ENST00000575338 COL15A1P39059 1388 aa8.35□□□□□ -1.07
SMG6-217ENST00000575338 NUP188Q5SRE5 1749 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 NWD2Q9ULI1 1742 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 TTC41PQ6P2S7 1318 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 KCNQ3O43525 872 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 SURF6O75683 361 aaKnown RBP8.34□□□□□ -1.07
SMG6-217ENST00000575338 OS9Q13438 667 aaPredicted RBP8.34□□□□□ -1.07
SMG6-217ENST00000575338 PPP1R42Q7Z4L9 355 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 CLASRPQ8N2M8 674 aaKnown RBP8.34□□□□□ -1.07
SMG6-217ENST00000575338 STAP2Q9UGK3 403 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 EXOC6BQ9Y2D4 811 aa8.34□□□□□ -1.07
SMG6-217ENST00000575338 PNMA6EA0A0J9YXQ4 647 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 GSPT1P15170 499 aaKnown RBP8.33□□□□□ -1.08
SMG6-217ENST00000575338 SDSP20132 328 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 PTMSP20962 102 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 RABEP1Q15276 862 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 ANKRD13DQ6ZTN6 518 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 CNTROBQ8N137 903 aa8.33□□□□□ -1.08
SMG6-217ENST00000575338 METTL22Q9BUU2 404 aaPredicted RBP8.33□□□□□ -1.08
SMG6-217ENST00000575338 GLI3P10071 1580 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 APBB1O00213 710 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 ST18O60284 1047 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 G3BP1Q13283 466 aaKnown RBP eCLIP8.32□□□□□ -1.08
SMG6-217ENST00000575338 NBR1Q14596 966 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 VSIG10Q8N0Z9 540 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 PLBD2Q8NHP8 589 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 RHPN1Q8TCX5 695 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 ZNF496Q96IT1 587 aaPredicted RBP8.32□□□□□ -1.08
SMG6-217ENST00000575338 TBC1D2Q9BYX2 928 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 STRN4Q9NRL3 753 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 TMOD3Q9NYL9 352 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 CIZ1Q9ULV3 898 aaPredicted RBP8.32□□□□□ -1.08
SMG6-217ENST00000575338 TOGARAM1Q9Y4F4 1720 aa8.32□□□□□ -1.08
SMG6-217ENST00000575338 SALL3Q9BXA9 1300 aa8.31□□□□□ -1.08
SMG6-217ENST00000575338 TNS2Q63HR2 1409 aa8.31□□□□□ -1.08
SMG6-217ENST00000575338 ANKRD36CQ5JPF3 1778 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms