RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 NWD1Q149M9 1564 aa23.1■■□□□ 1.29
SCARF1-206ENST00000573852 XPCQ01831 940 aaPredicted RBP23.1■■□□□ 1.29
SCARF1-206ENST00000573852 PPP1R42Q7Z4L9 355 aa23.1■■□□□ 1.29
SCARF1-206ENST00000573852 ZKSCAN5Q9Y2L8 839 aa23.1■■□□□ 1.29
SCARF1-206ENST00000573852 SURF6O75683 361 aaKnown RBP23.09■■□□□ 1.29
SCARF1-206ENST00000573852 HDGFL1Q5TGJ6 251 aa23.08■■□□□ 1.29
SCARF1-206ENST00000573852 PI4K2BQ8TCG2 481 aa23.08■■□□□ 1.29
SCARF1-206ENST00000573852 LTV1Q96GA3 475 aaPredicted RBP23.08■■□□□ 1.29
SCARF1-206ENST00000573852 TSPY26PQ9H489 355 aa23.08■■□□□ 1.29
SCARF1-206ENST00000573852 POLA2Q14181 598 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 USP48Q86UV5 1035 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 DIP2AQ14689 1571 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 EPB41L2O43491 1005 aaKnown RBP23.07■■□□□ 1.28
SCARF1-206ENST00000573852 RAB11FIP3O75154 756 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 RHPN1Q8TCX5 695 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 PKNOX2Q96KN3 472 aa23.07■■□□□ 1.28
SCARF1-206ENST00000573852 TCHHQ07283 1943 aa23.06■■□□□ 1.28
SCARF1-206ENST00000573852 PLEKHG5O94827 1062 aa23.06■■□□□ 1.28
SCARF1-206ENST00000573852 BABAM1Q9NWV8 329 aa23.06■■□□□ 1.28
SCARF1-206ENST00000573852 R3HCC1Q9Y3T6 440 aaKnown RBP23.06■■□□□ 1.28
SCARF1-206ENST00000573852 WDR33Q9C0J8 1336 aaKnown RBP23.06■■□□□ 1.28
SCARF1-206ENST00000573852 SGSM2O43147 1006 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 CCDC39Q9UFE4 941 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 GLIPR1L2Q4G1C9 344 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 SYAP1Q96A49 352 aaPredicted RBP23.05■■□□□ 1.28
SCARF1-206ENST00000573852 SNX14Q9Y5W7 946 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 RPAP1Q9BWH6 1393 aaPredicted RBP23.05■■□□□ 1.28
SCARF1-206ENST00000573852 RAD50Q92878 1312 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 TERF1P54274 439 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 USHBP1Q8N6Y0 703 aa23.05■■□□□ 1.28
SCARF1-206ENST00000573852 CEBPAP49715 358 aaPredicted RBP23.04■■□□□ 1.28
SCARF1-206ENST00000573852 EID1Q9Y6B2 187 aa23.04■■□□□ 1.28
SCARF1-206ENST00000573852 SRGAP3O43295 1099 aa23.04■■□□□ 1.28
SCARF1-206ENST00000573852 NBPF7P0C2Y1 421 aaPredicted RBP23.04■■□□□ 1.28
SCARF1-206ENST00000573852 MCM5P33992 734 aa23.03■■□□□ 1.28
SCARF1-206ENST00000573852 RASEFQ8IZ41 740 aa23.03■■□□□ 1.28
SCARF1-206ENST00000573852 LSG1Q9H089 658 aaKnown RBP23.03■■□□□ 1.28
SCARF1-206ENST00000573852 EIF2S2P20042 333 aaKnown RBP23.03■■□□□ 1.28
SCARF1-206ENST00000573852 TTC14Q96N46 770 aa23.03■■□□□ 1.28
SCARF1-206ENST00000573852 MARF1Q9Y4F3 1742 aaKnown RBP23.03■■□□□ 1.28
SCARF1-206ENST00000573852 LARP6Q9BRS8 491 aaKnown RBP23.02■■□□□ 1.28
SCARF1-206ENST00000573852 KIF1BPQ96EK5 621 aa23.02■■□□□ 1.28
SCARF1-206ENST00000573852 TBX22Q9Y458 520 aa23.02■■□□□ 1.28
SCARF1-206ENST00000573852 AK2P54819 239 aa23■■□□□ 1.27
SCARF1-206ENST00000573852 RUFY3Q7L099 469 aa23■■□□□ 1.27
SCARF1-206ENST00000573852 CNPY2Q9Y2B0 182 aa23■■□□□ 1.27
SCARF1-206ENST00000573852 CNTROBQ8N137 903 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 TMEM87AQ8NBN3 555 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 PHF14O94880 888 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 BEND3Q5T5X7 828 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 CWC27Q6UX04 472 aaKnown RBP22.99■■□□□ 1.27
SCARF1-206ENST00000573852 VSIG10Q8N0Z9 540 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 ABTB2Q8N961 1025 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 SPG7Q9UQ90 795 aa22.99■■□□□ 1.27
SCARF1-206ENST00000573852 EIF4A1P60842 406 aaKnown RBP22.98■■□□□ 1.27
SCARF1-206ENST00000573852 CHPF2Q9P2E5 772 aa22.98■■□□□ 1.27
SCARF1-206ENST00000573852 PI4KAP2A4QPH2 592 aa22.98■■□□□ 1.27
SCARF1-206ENST00000573852 ZSCAN22P10073 491 aaPredicted RBP22.98■■□□□ 1.27
SCARF1-206ENST00000573852 PI4KAP1Q8N8J0 262 aa22.98■■□□□ 1.27
SCARF1-206ENST00000573852 PDCL3Q9H2J4 239 aa22.98■■□□□ 1.27
SCARF1-206ENST00000573852 LGR6Q9HBX8 967 aa22.97■■□□□ 1.27
SCARF1-206ENST00000573852 CEMIPQ8WUJ3 1361 aa22.97■■□□□ 1.27
SCARF1-206ENST00000573852 CPA1P15085 419 aa22.97■■□□□ 1.27
SCARF1-206ENST00000573852 RBM10P98175 930 aaKnown RBP22.97■■□□□ 1.27
SCARF1-206ENST00000573852 DNAAF4Q8WXU2 420 aa22.97■■□□□ 1.27
SCARF1-206ENST00000573852 LIMCH1Q9UPQ0 1083 aa22.97■■□□□ 1.27
SCARF1-206ENST00000573852 SYT1P21579 422 aa22.96■■□□□ 1.27
SCARF1-206ENST00000573852 CSPP1Q1MSJ5 1256 aa22.96■■□□□ 1.27
SCARF1-206ENST00000573852 TPRNQ4KMQ1 711 aa22.96■■□□□ 1.27
SCARF1-206ENST00000573852 KCNQ3O43525 872 aa22.95■■□□□ 1.27
SCARF1-206ENST00000573852 ANXA1P04083 346 aa22.95■■□□□ 1.27
SCARF1-206ENST00000573852 PTMAP06454 111 aaKnown RBP22.95■■□□□ 1.27
SCARF1-206ENST00000573852 STX6O43752 255 aa22.95■■□□□ 1.26
SCARF1-206ENST00000573852 KIF13AQ9H1H9 1805 aa22.95■■□□□ 1.26
SCARF1-206ENST00000573852 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.95■■□□□ 1.26
SCARF1-206ENST00000573852 LARGE1O95461 756 aa22.94■■□□□ 1.26
SCARF1-206ENST00000573852 CCDC183Q5T5S1 534 aa22.94■■□□□ 1.26
SCARF1-206ENST00000573852 USP42Q9H9J4 1324 aaKnown RBP22.94■■□□□ 1.26
SCARF1-206ENST00000573852 UQCRHLA0A096LP55 91 aa22.94■■□□□ 1.26
SCARF1-206ENST00000573852 UQCRHP07919 91 aa22.94■■□□□ 1.26
SCARF1-206ENST00000573852 CRYBG1Q9Y4K1 1723 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 SLIT1O75093 1534 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 ARHGAP23Q9P227 1491 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 DTNBO60941 627 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 CASTP20810 708 aaKnown RBP22.93■■□□□ 1.26
SCARF1-206ENST00000573852 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.93■■□□□ 1.26
SCARF1-206ENST00000573852 PLPPR3Q6T4P5 718 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 SMC3Q9UQE7 1217 aa22.93■■□□□ 1.26
SCARF1-206ENST00000573852 ANKARQ7Z5J8 1434 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 PTH1RQ03431 593 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 HSP90AB4PQ58FF6 505 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 C14orf37Q86TY3 774 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 MPNDQ8N594 471 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 ZMYND15Q9H091 742 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 F13A1P00488 732 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 OS9Q13438 667 aaPredicted RBP22.92■■□□□ 1.26
SCARF1-206ENST00000573852 NBPF6Q5VWK0 638 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 FAM184AQ8NB25 1140 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 NBPF4Q96M43 638 aa22.92■■□□□ 1.26
SCARF1-206ENST00000573852 HYPKQ9NX55 129 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms