RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 COL15A1P39059 1388 aa23.26■■□□□ 1.31
SMG6-214ENST00000573827 EIF5P55010 431 aaKnown RBP23.25■■□□□ 1.31
SMG6-214ENST00000573827 HTATSF1O43719 755 aaKnown RBP23.24■■□□□ 1.31
SMG6-214ENST00000573827 DDX10Q13206 875 aaKnown RBP23.24■■□□□ 1.31
SMG6-214ENST00000573827 DCTN1Q14203 1278 aa23.24■■□□□ 1.31
SMG6-214ENST00000573827 RALBP1Q15311 655 aa23.24■■□□□ 1.31
SMG6-214ENST00000573827 USPL1Q5W0Q7 1092 aa23.24■■□□□ 1.31
SMG6-214ENST00000573827 NARFQ9UHQ1 456 aa23.24■■□□□ 1.31
SMG6-214ENST00000573827 BTBD11A6QL63 1104 aa23.22■■□□□ 1.31
SMG6-214ENST00000573827 POLRMTO00411 1230 aaKnown RBP23.22■■□□□ 1.31
SMG6-214ENST00000573827 STARD3NLO95772 234 aa23.22■■□□□ 1.31
SMG6-214ENST00000573827 TGFB2P61812 414 aa23.22■■□□□ 1.31
SMG6-214ENST00000573827 FMNL2Q96PY5 1086 aa23.22■■□□□ 1.31
SMG6-214ENST00000573827 PARP3Q9Y6F1 533 aa23.22■■□□□ 1.31
SMG6-214ENST00000573827 WWC3Q9ULE0 1092 aa23.21■■□□□ 1.31
SMG6-214ENST00000573827 N4BP2Q86UW6 1770 aaPredicted RBP23.21■■□□□ 1.31
SMG6-214ENST00000573827 KCNA3P22001 575 aa23.2■■□□□ 1.3
SMG6-214ENST00000573827 CANXP27824 592 aaKnown RBP23.2■■□□□ 1.3
SMG6-214ENST00000573827 TEX13AQ9BXU3 409 aaPredicted RBP23.2■■□□□ 1.3
SMG6-214ENST00000573827 DLG5Q8TDM6 1919 aa23.2■■□□□ 1.3
SMG6-214ENST00000573827 BRCA1P38398 1863 aaKnown RBP23.19■■□□□ 1.3
SMG6-214ENST00000573827 A0A0G2JLW4 131 aa23.19■■□□□ 1.3
SMG6-214ENST00000573827 ZPR1O75312 459 aa23.19■■□□□ 1.3
SMG6-214ENST00000573827 DPEP1P16444 411 aa23.19■■□□□ 1.3
SMG6-214ENST00000573827 NFIXQ14938 502 aa23.19■■□□□ 1.3
SMG6-214ENST00000573827 NRXN2Q9P2S2 1712 aa23.19■■□□□ 1.3
SMG6-214ENST00000573827 PRAMEF22A3QJZ6 481 aa23.18■■□□□ 1.3
SMG6-214ENST00000573827 RTF1Q92541 710 aaKnown RBP23.18■■□□□ 1.3
SMG6-214ENST00000573827 ADCY9O60503 1353 aa23.17■■□□□ 1.3
SMG6-214ENST00000573827 A1BGP04217 495 aa23.17■■□□□ 1.3
SMG6-214ENST00000573827 USP16Q9Y5T5 823 aa23.17■■□□□ 1.3
SMG6-214ENST00000573827 IL6STP40189 918 aaPredicted RBP23.16■■□□□ 1.3
SMG6-214ENST00000573827 NFE2L2Q16236 605 aa23.16■■□□□ 1.3
SMG6-214ENST00000573827 AFDNP55196 1824 aaKnown RBP23.15■■□□□ 1.3
SMG6-214ENST00000573827 SCN7AQ01118 1682 aa23.15■■□□□ 1.3
SMG6-214ENST00000573827 MYBBP1AQ9BQG0 1328 aaKnown RBP23.14■■□□□ 1.3
SMG6-214ENST00000573827 TAF7Q15545 349 aaPredicted RBP23.14■■□□□ 1.29
SMG6-214ENST00000573827 A0A087WZG4 1122 aa23.13■■□□□ 1.29
SMG6-214ENST00000573827 SNRPA1P09661 255 aaKnown RBP23.12■■□□□ 1.29
SMG6-214ENST00000573827 THUMPD2Q9BTF0 503 aaKnown RBP23.12■■□□□ 1.29
SMG6-214ENST00000573827 MIS18AQ9NYP9 233 aa23.12■■□□□ 1.29
SMG6-214ENST00000573827 KDM3BQ7LBC6 1761 aa23.12■■□□□ 1.29
SMG6-214ENST00000573827 CAMTA2O94983 1202 aa23.11■■□□□ 1.29
SMG6-214ENST00000573827 TBC1D2BQ9UPU7 963 aa23.11■■□□□ 1.29
SMG6-214ENST00000573827 NBPF26B4DH59 902 aa23.1■■□□□ 1.29
SMG6-214ENST00000573827 NBPF10Q6P3W6 841 aaKnown RBP23.1■■□□□ 1.29
SMG6-214ENST00000573827 NBPF15Q8N660 670 aa23.1■■□□□ 1.29
SMG6-214ENST00000573827 CARMIL3Q8ND23 1372 aa23.1■■□□□ 1.29
SMG6-214ENST00000573827 ATP10DQ9P241 1426 aa23.09■■□□□ 1.29
SMG6-214ENST00000573827 SERPINB2P05120 415 aa23.09■■□□□ 1.29
SMG6-214ENST00000573827 CHRNA5P30532 468 aa23.09■■□□□ 1.29
SMG6-214ENST00000573827 PIP4K2AP48426 406 aaPredicted RBP23.09■■□□□ 1.29
SMG6-214ENST00000573827 TBC1D9BQ66K14 1250 aa23.09■■□□□ 1.29
SMG6-214ENST00000573827 BCS1LQ9Y276 419 aa23.09■■□□□ 1.29
SMG6-214ENST00000573827 BCORQ6W2J9 1755 aa23.08■■□□□ 1.29
SMG6-214ENST00000573827 ARFGEF1Q9Y6D6 1849 aa23.08■■□□□ 1.28
SMG6-214ENST00000573827 PNNQ9H307 717 aaKnown RBP23.07■■□□□ 1.28
SMG6-214ENST00000573827 PRKRIP1Q9H875 184 aaPredicted RBP23.07■■□□□ 1.28
SMG6-214ENST00000573827 CEP350Q5VT06 3117 aa23.07■■□□□ 1.28
SMG6-214ENST00000573827 NEFMP07197 916 aa23.06■■□□□ 1.28
SMG6-214ENST00000573827 EIF4A1P60842 406 aaKnown RBP23.06■■□□□ 1.28
SMG6-214ENST00000573827 PIM2Q9P1W9 311 aa23.06■■□□□ 1.28
SMG6-214ENST00000573827 MAPK8IP3Q9UPT6 1336 aa23.06■■□□□ 1.28
SMG6-214ENST00000573827 GIGYF1O75420 1035 aaPredicted RBP23.05■■□□□ 1.28
SMG6-214ENST00000573827 PNISRQ8TF01 805 aaKnown RBP23.05■■□□□ 1.28
SMG6-214ENST00000573827 ZNF330Q9Y3S2 320 aaPredicted RBP23.05■■□□□ 1.28
SMG6-214ENST00000573827 LAMB4A4D0S4 1761 aa23.04■■□□□ 1.28
SMG6-214ENST00000573827 TMPOP42166 694 aaKnown RBP23.04■■□□□ 1.28
SMG6-214ENST00000573827 BICDL1Q6ZP65 573 aa23.04■■□□□ 1.28
SMG6-214ENST00000573827 ANKRD31Q8N7Z5 1873 aa23.04■■□□□ 1.28
SMG6-214ENST00000573827 DALRD3Q5D0E6 543 aaKnown RBP23.03■■□□□ 1.28
SMG6-214ENST00000573827 DZIP3Q86Y13 1208 aaKnown RBP23.03■■□□□ 1.28
SMG6-214ENST00000573827 DLEC1Q9Y238 1755 aa23.03■■□□□ 1.28
SMG6-214ENST00000573827 RIPK4P57078 832 aa23.02■■□□□ 1.28
SMG6-214ENST00000573827 PRR5LQ6MZQ0 368 aa23.02■■□□□ 1.28
SMG6-214ENST00000573827 RGL2O15211 777 aa23■■□□□ 1.27
SMG6-214ENST00000573827 C1QTNF8P60827 252 aa22.99■■□□□ 1.27
SMG6-214ENST00000573827 CLEC4GQ6UXB4 293 aa22.99■■□□□ 1.27
SMG6-214ENST00000573827 ARHGAP27Q6ZUM4 889 aa22.99■■□□□ 1.27
SMG6-214ENST00000573827 CCDC146Q8IYE0 955 aa22.99■■□□□ 1.27
SMG6-214ENST00000573827 ADAMTS8Q9UP79 889 aa22.99■■□□□ 1.27
SMG6-214ENST00000573827 TRIM35Q9UPQ4 493 aa22.98■■□□□ 1.27
SMG6-214ENST00000573827 RRP7AQ9Y3A4 280 aaKnown RBP22.98■■□□□ 1.27
SMG6-214ENST00000573827 COL11A2P13942 1736 aaPredicted RBP22.97■■□□□ 1.27
SMG6-214ENST00000573827 CCDC24Q8N4L8 307 aa22.97■■□□□ 1.27
SMG6-214ENST00000573827 BRIP1Q9BX63 1249 aa22.97■■□□□ 1.27
SMG6-214ENST00000573827 LRP10Q7Z4F1 713 aa22.96■■□□□ 1.27
SMG6-214ENST00000573827 C2CD5Q86YS7 1000 aa22.96■■□□□ 1.27
SMG6-214ENST00000573827 RUNDC1Q96C34 613 aa22.96■■□□□ 1.27
SMG6-214ENST00000573827 SETDB2Q96T68 719 aa22.96■■□□□ 1.27
SMG6-214ENST00000573827 BABAM1Q9NWV8 329 aa22.96■■□□□ 1.27
SMG6-214ENST00000573827 HLFQ16534 295 aa22.95■■□□□ 1.26
SMG6-214ENST00000573827 NPM2Q86SE8 214 aaKnown RBP22.94■■□□□ 1.26
SMG6-214ENST00000573827 TSPYL4Q9UJ04 414 aa22.94■■□□□ 1.26
SMG6-214ENST00000573827 H0YIN7 160 aa22.93■■□□□ 1.26
SMG6-214ENST00000573827 ZEB1P37275 1124 aaPredicted RBP22.93■■□□□ 1.26
SMG6-214ENST00000573827 PRELPP51888 382 aa22.93■■□□□ 1.26
SMG6-214ENST00000573827 LMOD3Q0VAK6 560 aa22.93■■□□□ 1.26
SMG6-214ENST00000573827 PDIA6Q15084 440 aa22.93■■□□□ 1.26
SMG6-214ENST00000573827 CNBD1Q8NA66 436 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms