RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 CYP27B1O15528 508 aa14.82□□□□□ -0.04
CIITA-209ENST00000573309 KLHL40Q2TBA0 621 aa14.82□□□□□ -0.04
CIITA-209ENST00000573309 AKAP4Q5JQC9 854 aa14.82□□□□□ -0.04
CIITA-209ENST00000573309 EIF4A1P60842 406 aaKnown RBP14.81□□□□□ -0.04
CIITA-209ENST00000573309 CWF19L2Q2TBE0 894 aaKnown RBP14.81□□□□□ -0.04
CIITA-209ENST00000573309 PTMSP20962 102 aa14.81□□□□□ -0.04
CIITA-209ENST00000573309 ANP32BQ92688 251 aaKnown RBP14.81□□□□□ -0.04
CIITA-209ENST00000573309 RBSNQ9H1K0 784 aa14.81□□□□□ -0.04
CIITA-209ENST00000573309 STRCP1A6NGW2 1772 aa14.8□□□□□ -0.04
CIITA-209ENST00000573309 ZNF142P52746 1687 aaPredicted RBP14.8□□□□□ -0.04
CIITA-209ENST00000573309 USP16Q9Y5T5 823 aa14.8□□□□□ -0.04
CIITA-209ENST00000573309 LRRFIP2Q9Y608 721 aaKnown RBP14.8□□□□□ -0.04
CIITA-209ENST00000573309 TERF1P54274 439 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 ZNF496Q96IT1 587 aaPredicted RBP14.79□□□□□ -0.04
CIITA-209ENST00000573309 IL1RAPL2Q9NP60 686 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 AK9Q5TCS8 1911 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 NCLP19338 710 aaKnown RBP14.79□□□□□ -0.04
CIITA-209ENST00000573309 CABP4P57796 275 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 CAVIN1Q6NZI2 390 aaKnown RBP14.79□□□□□ -0.04
CIITA-209ENST00000573309 UQCRHLA0A096LP55 91 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 UQCRHP07919 91 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 MCTP1Q6DN14 999 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 CLEC17AQ6ZS10 378 aa14.79□□□□□ -0.04
CIITA-209ENST00000573309 NOL7Q9UMY1 257 aaKnown RBP14.79□□□□□ -0.04
CIITA-209ENST00000573309 IBTKQ9P2D0 1353 aaPredicted RBP14.78□□□□□ -0.04
CIITA-209ENST00000573309 PODXL2Q9NZ53 605 aa14.78□□□□□ -0.04
CIITA-209ENST00000573309 ABCC4O15439 1325 aa14.78□□□□□ -0.04
CIITA-209ENST00000573309 ZNF445P59923 1031 aa14.78□□□□□ -0.04
CIITA-209ENST00000573309 ZSCAN23Q3MJ62 389 aa14.78□□□□□ -0.04
CIITA-209ENST00000573309 TBC1D9Q6ZT07 1266 aa14.78□□□□□ -0.04
CIITA-209ENST00000573309 PNMA6EA0A0J9YXQ4 647 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 GOLGA6L22H0YM25 854 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 NBPF7P0C2Y1 421 aaPredicted RBP14.77□□□□□ -0.04
CIITA-209ENST00000573309 AMOTQ4VCS5 1084 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 BMP2KLQ5H9B9 411 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 TTC5Q8N0Z6 440 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 RGPD2P0DJD1 1756 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 MAP4K4O95819 1239 aaPredicted RBP14.77□□□□□ -0.04
CIITA-209ENST00000573309 PHKG2P15735 406 aa14.77□□□□□ -0.04
CIITA-209ENST00000573309 ATP5J2-PTCD1G3V325 749 aa14.77□□□□□ -0.05
CIITA-209ENST00000573309 ZNF500O60304 480 aaPredicted RBP14.77□□□□□ -0.05
CIITA-209ENST00000573309 PKP1Q13835 747 aa14.77□□□□□ -0.05
CIITA-209ENST00000573309 NCBP3Q53F19 620 aaKnown RBP14.77□□□□□ -0.05
CIITA-209ENST00000573309 PRIM1P49642 420 aaKnown RBP14.76□□□□□ -0.05
CIITA-209ENST00000573309 SPG7Q9UQ90 795 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 NFAT5O94916 1531 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 FAM182BQ5T319 152 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 PDLIM2Q96JY6 352 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 LMBRD1Q9NUN5 540 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 RBM27Q9P2N5 1060 aaKnown RBP14.76□□□□□ -0.05
CIITA-209ENST00000573309 MAP3K2Q9Y2U5 619 aa14.76□□□□□ -0.05
CIITA-209ENST00000573309 IFNL2Q8IZJ0 200 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 CEP85Q6P2H3 762 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 ZNF790Q6PG37 636 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 ACSBG1Q96GR2 724 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 TNS3Q68CZ2 1445 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 NWD1Q149M9 1564 aa14.75□□□□□ -0.05
CIITA-209ENST00000573309 ARHGAP45Q92619 1136 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 CCDC85AQ96PX6 553 aaPredicted RBP14.74□□□□□ -0.05
CIITA-209ENST00000573309 LTN1O94822 1766 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 GIGYF1O75420 1035 aaPredicted RBP14.74□□□□□ -0.05
CIITA-209ENST00000573309 HS1BP3Q53T59 392 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 CHAMP1Q96JM3 812 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 MEGF6O75095 1541 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 KLHDC4Q8TBB5 520 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 ZCRB1Q8TBF4 217 aaKnown RBP14.74□□□□□ -0.05
CIITA-209ENST00000573309 SIL1Q9H173 461 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 PRDM10Q9NQV6 1147 aa14.74□□□□□ -0.05
CIITA-209ENST00000573309 MED1Q15648 1581 aaPredicted RBP14.73□□□□□ -0.05
CIITA-209ENST00000573309 RIC3Q7Z5B4 369 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 MAP7D2Q96T17 732 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 C9orf78Q9NZ63 289 aaPredicted RBP14.73□□□□□ -0.05
CIITA-209ENST00000573309 UBTFL1P0CB47 393 aaPredicted RBP14.73□□□□□ -0.05
CIITA-209ENST00000573309 COPS6Q7L5N1 327 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 RTL1A6NKG5 1358 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 A1BGP04217 495 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 KCNQ4P56696 695 aa14.73□□□□□ -0.05
CIITA-209ENST00000573309 INTS3Q68E01 1043 aaKnown RBP14.73□□□□□ -0.05
CIITA-209ENST00000573309 PA2G4Q9UQ80 394 aaKnown RBP14.73□□□□□ -0.05
CIITA-209ENST00000573309 OS9Q13438 667 aaPredicted RBP14.72□□□□□ -0.05
CIITA-209ENST00000573309 XAGE3Q8WTP9 111 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 SLC52A2Q9HAB3 445 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 UBAP1LF5GYI3 381 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 HTATSF1O43719 755 aaKnown RBP14.72□□□□□ -0.05
CIITA-209ENST00000573309 NUTM1Q86Y26 1132 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 GPT2Q8TD30 523 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 SRCIN1Q9C0H9 1055 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 USP44Q9H0E7 712 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 ZKSCAN5Q9Y2L8 839 aa14.72□□□□□ -0.05
CIITA-209ENST00000573309 GCC1Q96CN9 775 aa14.71□□□□□ -0.05
CIITA-209ENST00000573309 CHMP3Q9Y3E7 222 aa14.71□□□□□ -0.05
CIITA-209ENST00000573309 GNAI2P04899 355 aa14.71□□□□□ -0.05
CIITA-209ENST00000573309 ZBTB3Q9H5J0 574 aa14.71□□□□□ -0.05
CIITA-209ENST00000573309 FAM177BA6PVY3 158 aa14.71□□□□□ -0.06
CIITA-209ENST00000573309 SRGAP3O43295 1099 aa14.71□□□□□ -0.06
CIITA-209ENST00000573309 PRPF40AO75400 957 aaKnown RBP14.71□□□□□ -0.06
CIITA-209ENST00000573309 SURF6O75683 361 aaKnown RBP14.71□□□□□ -0.06
CIITA-209ENST00000573309 CYP2E1P05181 493 aaPredicted RBP14.71□□□□□ -0.06
CIITA-209ENST00000573309 DNAAF4Q8WXU2 420 aa14.71□□□□□ -0.06
CIITA-209ENST00000573309 MYD88Q99836 296 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms