RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 HSPA6P17066 643 aa23.7■■□□□ 1.38
CIITA-206ENST00000571190 NFIXQ14938 502 aa23.7■■□□□ 1.38
CIITA-206ENST00000571190 N4BP2Q86UW6 1770 aaPredicted RBP23.7■■□□□ 1.38
CIITA-206ENST00000571190 COL15A1P39059 1388 aa23.69■■□□□ 1.38
CIITA-206ENST00000571190 DALRD3Q5D0E6 543 aaKnown RBP23.68■■□□□ 1.38
CIITA-206ENST00000571190 C9orf131Q5VYM1 1079 aa23.67■■□□□ 1.38
CIITA-206ENST00000571190 ZNF496Q96IT1 587 aaPredicted RBP23.67■■□□□ 1.38
CIITA-206ENST00000571190 GNAT3A8MTJ3 354 aa23.66■■□□□ 1.38
CIITA-206ENST00000571190 CANXP27824 592 aaKnown RBP23.65■■□□□ 1.38
CIITA-206ENST00000571190 EIF5P55010 431 aaKnown RBP23.65■■□□□ 1.38
CIITA-206ENST00000571190 GAS2L2Q8NHY3 880 aa23.65■■□□□ 1.38
CIITA-206ENST00000571190 PHACTR3Q96KR7 559 aa23.65■■□□□ 1.38
CIITA-206ENST00000571190 ZNF790Q6PG37 636 aa23.64■■□□□ 1.37
CIITA-206ENST00000571190 NMRK2Q9NPI5 230 aa23.64■■□□□ 1.37
CIITA-206ENST00000571190 SERPINB2P05120 415 aa23.63■■□□□ 1.37
CIITA-206ENST00000571190 TTC5Q8N0Z6 440 aa23.63■■□□□ 1.37
CIITA-206ENST00000571190 STARD3NLO95772 234 aa23.62■■□□□ 1.37
CIITA-206ENST00000571190 TEFQ10587 303 aa23.62■■□□□ 1.37
CIITA-206ENST00000571190 RSPH6AQ9H0K4 717 aa23.62■■□□□ 1.37
CIITA-206ENST00000571190 CEMIPQ8WUJ3 1361 aa23.62■■□□□ 1.37
CIITA-206ENST00000571190 HEG1Q9ULI3 1381 aa23.62■■□□□ 1.37
CIITA-206ENST00000571190 CEP350Q5VT06 3117 aa23.61■■□□□ 1.37
CIITA-206ENST00000571190 KCNQ3O43525 872 aa23.6■■□□□ 1.37
CIITA-206ENST00000571190 TOMM70O94826 608 aa23.6■■□□□ 1.37
CIITA-206ENST00000571190 PRKAR2BP31323 418 aa23.6■■□□□ 1.37
CIITA-206ENST00000571190 BRCA1P38398 1863 aaKnown RBP23.59■■□□□ 1.37
CIITA-206ENST00000571190 CARMIL3Q8ND23 1372 aa23.58■■□□□ 1.37
CIITA-206ENST00000571190 RNF181Q9P0P0 153 aa23.58■■□□□ 1.37
CIITA-206ENST00000571190 TBC1D9BQ66K14 1250 aa23.57■■□□□ 1.36
CIITA-206ENST00000571190 BICDL1Q6ZP65 573 aa23.57■■□□□ 1.36
CIITA-206ENST00000571190 TEX13AQ9BXU3 409 aaPredicted RBP23.57■■□□□ 1.36
CIITA-206ENST00000571190 UBR2Q8IWV8 1755 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 A0A087WZG4 1122 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 A1BGP04217 495 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 PPP2R1AP30153 589 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 PRELPP51888 382 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 CFAP53Q96M91 514 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 FMNL2Q96PY5 1086 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 TBC1D2BQ9UPU7 963 aa23.56■■□□□ 1.36
CIITA-206ENST00000571190 RASSF7Q02833 373 aa23.55■■□□□ 1.36
CIITA-206ENST00000571190 IL6STP40189 918 aaPredicted RBP23.54■■□□□ 1.36
CIITA-206ENST00000571190 C2CD5Q86YS7 1000 aa23.54■■□□□ 1.36
CIITA-206ENST00000571190 NRXN2Q9P2S2 1712 aa23.53■■□□□ 1.36
CIITA-206ENST00000571190 BTBD11A6QL63 1104 aa23.53■■□□□ 1.36
CIITA-206ENST00000571190 TTLL6Q8N841 843 aa23.53■■□□□ 1.36
CIITA-206ENST00000571190 CAMTA2O94983 1202 aa23.52■■□□□ 1.36
CIITA-206ENST00000571190 NUDCQ9Y266 331 aa23.52■■□□□ 1.36
CIITA-206ENST00000571190 ZNF330Q9Y3S2 320 aaPredicted RBP23.52■■□□□ 1.36
CIITA-206ENST00000571190 USP16Q9Y5T5 823 aa23.52■■□□□ 1.36
CIITA-206ENST00000571190 PRAMEF22A3QJZ6 481 aa23.51■■□□□ 1.35
CIITA-206ENST00000571190 H0YIN7 160 aa23.51■■□□□ 1.35
CIITA-206ENST00000571190 U2AF1L5P0DN76 240 aaPredicted RBP23.51■■□□□ 1.35
CIITA-206ENST00000571190 APLP1P51693 650 aa23.51■■□□□ 1.35
CIITA-206ENST00000571190 U2AF1Q01081 240 aaKnown RBP eCLIP23.51■■□□□ 1.35
CIITA-206ENST00000571190 CCDC24Q8N4L8 307 aa23.51■■□□□ 1.35
CIITA-206ENST00000571190 RBM46Q8TBY0 533 aaKnown RBP23.51■■□□□ 1.35
CIITA-206ENST00000571190 ARFGEF1Q9Y6D6 1849 aa23.51■■□□□ 1.35
CIITA-206ENST00000571190 PRR5LQ6MZQ0 368 aa23.5■■□□□ 1.35
CIITA-206ENST00000571190 MCM10Q7L590 875 aa23.5■■□□□ 1.35
CIITA-206ENST00000571190 DNAJC5GQ8N7S2 189 aa23.5■■□□□ 1.35
CIITA-206ENST00000571190 RRAGCQ9HB90 399 aa23.5■■□□□ 1.35
CIITA-206ENST00000571190 NFKBIEO00221 500 aa23.49■■□□□ 1.35
CIITA-206ENST00000571190 BRIP1Q9BX63 1249 aa23.49■■□□□ 1.35
CIITA-206ENST00000571190 KDM2BQ8NHM5 1336 aa23.49■■□□□ 1.35
CIITA-206ENST00000571190 PIP4K2AP48426 406 aaPredicted RBP23.48■■□□□ 1.35
CIITA-206ENST00000571190 DCTN1Q14203 1278 aa23.48■■□□□ 1.35
CIITA-206ENST00000571190 LMNB1P20700 586 aa23.47■■□□□ 1.35
CIITA-206ENST00000571190 SIPA1L3O60292 1781 aaPredicted RBP23.46■■□□□ 1.35
CIITA-206ENST00000571190 AFDNP55196 1824 aaKnown RBP23.45■■□□□ 1.34
CIITA-206ENST00000571190 ZC3H4Q9UPT8 1303 aaKnown RBP23.45■■□□□ 1.34
CIITA-206ENST00000571190 DZIP3Q86Y13 1208 aaKnown RBP23.45■■□□□ 1.34
CIITA-206ENST00000571190 SNRPA1P09661 255 aaKnown RBP23.44■■□□□ 1.34
CIITA-206ENST00000571190 PDE6BP35913 854 aa23.44■■□□□ 1.34
CIITA-206ENST00000571190 FSTL1Q12841 308 aa23.44■■□□□ 1.34
CIITA-206ENST00000571190 C16orf71Q8IYS4 520 aaPredicted RBP23.44■■□□□ 1.34
CIITA-206ENST00000571190 RTF1Q92541 710 aaKnown RBP23.44■■□□□ 1.34
CIITA-206ENST00000571190 ZNF622Q969S3 477 aaKnown RBP eCLIP23.44■■□□□ 1.34
CIITA-206ENST00000571190 SETDB2Q96T68 719 aa23.44■■□□□ 1.34
CIITA-206ENST00000571190 VIRMAQ69YN4 1812 aaKnown RBP23.44■■□□□ 1.34
CIITA-206ENST00000571190 GLTPD2A6NH11 291 aa23.43■■□□□ 1.34
CIITA-206ENST00000571190 HTATSF1O43719 755 aaKnown RBP23.43■■□□□ 1.34
CIITA-206ENST00000571190 IFFO2Q5TF58 517 aa23.43■■□□□ 1.34
CIITA-206ENST00000571190 PDZRN3Q9UPQ7 1066 aa23.43■■□□□ 1.34
CIITA-206ENST00000571190 NBPF26B4DH59 902 aa23.42■■□□□ 1.34
CIITA-206ENST00000571190 C21orf2O43822 256 aa23.42■■□□□ 1.34
CIITA-206ENST00000571190 HTRA3P83110 453 aa23.42■■□□□ 1.34
CIITA-206ENST00000571190 NBPF10Q6P3W6 841 aaKnown RBP23.42■■□□□ 1.34
CIITA-206ENST00000571190 NBPF15Q8N660 670 aa23.42■■□□□ 1.34
CIITA-206ENST00000571190 SCN7AQ01118 1682 aa23.41■■□□□ 1.34
CIITA-206ENST00000571190 NPM2Q86SE8 214 aaKnown RBP23.41■■□□□ 1.34
CIITA-206ENST00000571190 CNBD1Q8NA66 436 aa23.41■■□□□ 1.34
CIITA-206ENST00000571190 ZNF219Q9P2Y4 722 aaPredicted RBP23.41■■□□□ 1.34
CIITA-206ENST00000571190 SRGNP10124 158 aa23.39■■□□□ 1.33
CIITA-206ENST00000571190 TAF7Q15545 349 aaPredicted RBP23.39■■□□□ 1.33
CIITA-206ENST00000571190 CLEC4GQ6UXB4 293 aa23.39■■□□□ 1.33
CIITA-206ENST00000571190 MIS18AQ9NYP9 233 aa23.39■■□□□ 1.33
CIITA-206ENST00000571190 DLEC1Q9Y238 1755 aa23.37■■□□□ 1.33
CIITA-206ENST00000571190 POTECB2RU33 542 aa23.37■■□□□ 1.33
CIITA-206ENST00000571190 VEGFAP15692 232 aaPredicted RBP23.37■■□□□ 1.33
CIITA-206ENST00000571190 STYK1Q6J9G0 422 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms