RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 KDM3BQ7LBC6 1761 aa8.43□□□□□ -1.06
VPS53-209ENST00000570771 VIRMAQ69YN4 1812 aaKnown RBP8.43□□□□□ -1.06
VPS53-209ENST00000570771 EN1Q05925 392 aaPredicted RBP8.42□□□□□ -1.06
VPS53-209ENST00000570771 LMOD3Q0VAK6 560 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 ITPK1Q13572 414 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 C1orf141Q5JVX7 400 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 FAM196AQ6ZSG2 479 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 WWC1Q8IX03 1113 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 TSR2Q969E8 191 aaKnown RBP8.42□□□□□ -1.06
VPS53-209ENST00000570771 CDCA7LQ96GN5 454 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 BCL11BQ9C0K0 894 aaPredicted RBP8.42□□□□□ -1.06
VPS53-209ENST00000570771 ANO8Q9HCE9 1232 aaPredicted RBP8.42□□□□□ -1.06
VPS53-209ENST00000570771 PALLDQ8WX93 1383 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 C5P01031 1676 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 UBR2Q8IWV8 1755 aa8.42□□□□□ -1.06
VPS53-209ENST00000570771 RREB1Q92766 1687 aa8.41□□□□□ -1.06
VPS53-209ENST00000570771 ZNF853P0CG23 659 aa8.41□□□□□ -1.06
VPS53-209ENST00000570771 EZH2Q15910 746 aaKnown RBP8.41□□□□□ -1.06
VPS53-209ENST00000570771 CAMKK2Q96RR4 588 aa8.41□□□□□ -1.06
VPS53-209ENST00000570771 LY75O60449 1722 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 NUP188Q5SRE5 1749 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 HEG1Q9ULI3 1381 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 ERVV-2B6SEH9 535 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 ST18O60284 1047 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 CABP4P57796 275 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 ZNF827Q17R98 1081 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 ZNF496Q96IT1 587 aaPredicted RBP8.4□□□□□ -1.06
VPS53-209ENST00000570771 TMOD3Q9NYL9 352 aa8.4□□□□□ -1.06
VPS53-209ENST00000570771 PTCD1O75127 700 aaKnown RBP8.39□□□□□ -1.07
VPS53-209ENST00000570771 APBA3O96018 575 aa8.39□□□□□ -1.07
VPS53-209ENST00000570771 PIP4K2AP48426 406 aaPredicted RBP8.39□□□□□ -1.07
VPS53-209ENST00000570771 CALD1Q05682 793 aaKnown RBP8.39□□□□□ -1.07
VPS53-209ENST00000570771 CCDC27Q2M243 656 aa8.39□□□□□ -1.07
VPS53-209ENST00000570771 TSPYL6Q8N831 410 aa8.39□□□□□ -1.07
VPS53-209ENST00000570771 LINC00116Q8NCU8 138 aa8.39□□□□□ -1.07
VPS53-209ENST00000570771 MBIPQ9NS73 344 aa8.39□□□□□ -1.07
VPS53-209ENST00000570771 BMP2KQ9NSY1 1161 aaPredicted RBP8.39□□□□□ -1.07
VPS53-209ENST00000570771 CICQ96RK0 1608 aaPredicted RBP8.39□□□□□ -1.07
VPS53-209ENST00000570771 FANCIQ9NVI1 1328 aa8.38□□□□□ -1.07
VPS53-209ENST00000570771 CHL1O00533 1208 aa8.38□□□□□ -1.07
VPS53-209ENST00000570771 HTATSF1O43719 755 aaKnown RBP8.38□□□□□ -1.07
VPS53-209ENST00000570771 PDGFDQ9GZP0 370 aaPredicted RBP8.38□□□□□ -1.07
VPS53-209ENST00000570771 BTBD11A6QL63 1104 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 HSP90AB1P08238 724 aaKnown RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 EIF4A1P60842 406 aaKnown RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 GOLGA2Q08379 1002 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 TEFQ10587 303 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 TXNRD1Q16881 649 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 ZNF790Q6PG37 636 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 WDR63Q8IWG1 891 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 DNAJC10Q8IXB1 793 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 C8orf58Q8NAV2 365 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 RTF1Q92541 710 aaKnown RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 LAS1LQ9Y4W2 734 aaKnown RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 RGPD3A6NKT7 1758 aaPredicted RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 RGPD4Q7Z3J3 1758 aa8.37□□□□□ -1.07
VPS53-209ENST00000570771 COL5A3P25940 1745 aaPredicted RBP8.37□□□□□ -1.07
VPS53-209ENST00000570771 TUBGCP6Q96RT7 1819 aa8.36□□□□□ -1.07
VPS53-209ENST00000570771 LOC102724428A0A0B4J2F2 783 aa8.36□□□□□ -1.07
VPS53-209ENST00000570771 SIK1P57059 783 aa8.36□□□□□ -1.07
VPS53-209ENST00000570771 TAF7Q15545 349 aaPredicted RBP8.36□□□□□ -1.07
VPS53-209ENST00000570771 PROSER3Q2NL68 480 aa8.36□□□□□ -1.07
VPS53-209ENST00000570771 TSPYL4Q9UJ04 414 aa8.36□□□□□ -1.07
VPS53-209ENST00000570771 IL16Q14005 1332 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 C4BP0C0L5 1744 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 E9PSI1 815 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 SOCS7O14512 581 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 PLSCR1O15162 318 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 ANXA1P04083 346 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 SLFN5Q08AF3 891 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 DUSP27Q5VZP5 1158 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 LRP10Q7Z4F1 713 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 TRMT2AQ8IZ69 625 aaKnown RBP8.35□□□□□ -1.07
VPS53-209ENST00000570771 CFAP44Q96MT7 982 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 IFT57Q9NWB7 429 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 COLQQ9Y215 455 aaPredicted RBP8.35□□□□□ -1.07
VPS53-209ENST00000570771 USP16Q9Y5T5 823 aa8.35□□□□□ -1.07
VPS53-209ENST00000570771 NBPF26B4DH59 902 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 ELL2O00472 640 aaPredicted RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 TCERG1O14776 1098 aaKnown RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 GIGYF1O75420 1035 aaPredicted RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 PDIA6Q15084 440 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 NBPF14Q5TI25 921 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 NBPF10Q6P3W6 841 aaKnown RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 INTS5Q6P9B9 1019 aaKnown RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 NBPF15Q8N660 670 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 NECTIN2Q92692 538 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 MYH16Q9H6N6 1097 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 CCNL1Q9UK58 526 aaPredicted RBP8.34□□□□□ -1.07
VPS53-209ENST00000570771 ZBTB1Q9Y2K1 713 aa8.34□□□□□ -1.07
VPS53-209ENST00000570771 ZNF831Q5JPB2 1677 aa8.34□□□□□ -1.08
VPS53-209ENST00000570771 TAF1LQ8IZX4 1826 aa8.33□□□□□ -1.08
VPS53-209ENST00000570771 MYH14Q7Z406 1995 aaKnown RBP8.33□□□□□ -1.08
VPS53-209ENST00000570771 LAMB4A4D0S4 1761 aa8.33□□□□□ -1.08
VPS53-209ENST00000570771 A1BGP04217 495 aa8.33□□□□□ -1.08
VPS53-209ENST00000570771 CYP19A1P11511 503 aaPredicted RBP8.33□□□□□ -1.08
VPS53-209ENST00000570771 TIE1P35590 1138 aa8.33□□□□□ -1.08
VPS53-209ENST00000570771 EXOSC9Q06265 439 aaKnown RBP8.33□□□□□ -1.08
VPS53-209ENST00000570771 ATP6V1AP38606 617 aa8.32□□□□□ -1.08
VPS53-209ENST00000570771 CRKLP46109 303 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms