RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 RNMTO43148 476 aaKnown RBP13.72□□□□□ -0.21
VPS39-211ENST00000568755 FCHSD2O94868 740 aa13.72□□□□□ -0.21
VPS39-211ENST00000568755 HMOX1P09601 288 aa13.72□□□□□ -0.21
VPS39-211ENST00000568755 DNAJC10Q8IXB1 793 aa13.72□□□□□ -0.21
VPS39-211ENST00000568755 PCNTO95613 3336 aa13.72□□□□□ -0.21
VPS39-211ENST00000568755 SOS1Q07889 1333 aaPredicted RBP13.71□□□□□ -0.21
VPS39-211ENST00000568755 POLRMTO00411 1230 aaKnown RBP13.71□□□□□ -0.21
VPS39-211ENST00000568755 SLC39A6Q13433 755 aa13.71□□□□□ -0.21
VPS39-211ENST00000568755 ARHGAP27Q6ZUM4 889 aa13.71□□□□□ -0.21
VPS39-211ENST00000568755 ANKRD31Q8N7Z5 1873 aa13.71□□□□□ -0.21
VPS39-211ENST00000568755 TNRC6CQ9HCJ0 1690 aaKnown RBP13.7□□□□□ -0.22
VPS39-211ENST00000568755 CYP19A1P11511 503 aaPredicted RBP13.7□□□□□ -0.22
VPS39-211ENST00000568755 TM4SF1P30408 202 aa13.7□□□□□ -0.22
VPS39-211ENST00000568755 MTHFSDQ2M296 383 aaKnown RBP13.7□□□□□ -0.22
VPS39-211ENST00000568755 PIM2Q9P1W9 311 aa13.7□□□□□ -0.22
VPS39-211ENST00000568755 COL15A1P39059 1388 aa13.7□□□□□ -0.22
VPS39-211ENST00000568755 SCN7AQ01118 1682 aa13.69□□□□□ -0.22
VPS39-211ENST00000568755 USPL1Q5W0Q7 1092 aa13.69□□□□□ -0.22
VPS39-211ENST00000568755 WDR90Q96KV7 1748 aa13.69□□□□□ -0.22
VPS39-211ENST00000568755 NPC1L1Q9UHC9 1359 aa13.69□□□□□ -0.22
VPS39-211ENST00000568755 DICER1Q9UPY3 1922 aaKnown RBP13.68□□□□□ -0.22
VPS39-211ENST00000568755 DIAPH1O60610 1272 aaKnown RBP13.68□□□□□ -0.22
VPS39-211ENST00000568755 ZPR1O75312 459 aa13.68□□□□□ -0.22
VPS39-211ENST00000568755 CHRNA5P30532 468 aa13.68□□□□□ -0.22
VPS39-211ENST00000568755 CC2D1BQ5T0F9 858 aaKnown RBP13.68□□□□□ -0.22
VPS39-211ENST00000568755 NARFQ9UHQ1 456 aa13.68□□□□□ -0.22
VPS39-211ENST00000568755 ZBTB1Q9Y2K1 713 aa13.68□□□□□ -0.22
VPS39-211ENST00000568755 C1QBPQ07021 282 aaKnown RBP13.67□□□□□ -0.22
VPS39-211ENST00000568755 DALRD3Q5D0E6 543 aaKnown RBP13.67□□□□□ -0.22
VPS39-211ENST00000568755 C9orf131Q5VYM1 1079 aa13.67□□□□□ -0.22
VPS39-211ENST00000568755 VSIG10Q8N0Z9 540 aa13.67□□□□□ -0.22
VPS39-211ENST00000568755 BCL2L12Q9HB09 334 aa13.67□□□□□ -0.22
VPS39-211ENST00000568755 NMRK2Q9NPI5 230 aa13.67□□□□□ -0.22
VPS39-211ENST00000568755 BCORQ6W2J9 1755 aa13.66□□□□□ -0.22
VPS39-211ENST00000568755 CACNA1SQ13698 1873 aa13.66□□□□□ -0.22
VPS39-211ENST00000568755 TOMM70O94826 608 aa13.66□□□□□ -0.22
VPS39-211ENST00000568755 NFIXQ14938 502 aa13.66□□□□□ -0.22
VPS39-211ENST00000568755 COL11A2P13942 1736 aaPredicted RBP13.66□□□□□ -0.22
VPS39-211ENST00000568755 TIAM2Q8IVF5 1701 aa13.66□□□□□ -0.22
VPS39-211ENST00000568755 FER1L6Q2WGJ9 1857 aa13.65□□□□□ -0.22
VPS39-211ENST00000568755 IFFO2Q5TF58 517 aa13.64□□□□□ -0.23
VPS39-211ENST00000568755 ARFGEF2Q9Y6D5 1785 aa13.63□□□□□ -0.23
VPS39-211ENST00000568755 CARMIL3Q8ND23 1372 aa13.63□□□□□ -0.23
VPS39-211ENST00000568755 APLP1P51693 650 aa13.63□□□□□ -0.23
VPS39-211ENST00000568755 EIF5P55010 431 aaKnown RBP13.63□□□□□ -0.23
VPS39-211ENST00000568755 RNF181Q9P0P0 153 aa13.63□□□□□ -0.23
VPS39-211ENST00000568755 HEG1Q9ULI3 1381 aa13.62□□□□□ -0.23
VPS39-211ENST00000568755 SERPINB2P05120 415 aa13.62□□□□□ -0.23
VPS39-211ENST00000568755 IL17REQ8NFR9 667 aa13.62□□□□□ -0.23
VPS39-211ENST00000568755 RBM46Q8TBY0 533 aaKnown RBP13.62□□□□□ -0.23
VPS39-211ENST00000568755 CEMIPQ8WUJ3 1361 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 DLG5Q8TDM6 1919 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 GNAT3A8MTJ3 354 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 CANXP27824 592 aaKnown RBP13.61□□□□□ -0.23
VPS39-211ENST00000568755 RASSF7Q02833 373 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 ZNF790Q6PG37 636 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 TTC5Q8N0Z6 440 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 DNAJC5GQ8N7S2 189 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 GAS2L2Q8NHY3 880 aa13.61□□□□□ -0.23
VPS39-211ENST00000568755 ZNF496Q96IT1 587 aaPredicted RBP13.61□□□□□ -0.23
VPS39-211ENST00000568755 SLX4Q8IY92 1834 aa13.6□□□□□ -0.23
VPS39-211ENST00000568755 U2SURPO15042 1029 aaKnown RBP13.6□□□□□ -0.23
VPS39-211ENST00000568755 STARD3NLO95772 234 aa13.6□□□□□ -0.23
VPS39-211ENST00000568755 KDM2BQ8NHM5 1336 aa13.6□□□□□ -0.23
VPS39-211ENST00000568755 ZC3H4Q9UPT8 1303 aaKnown RBP13.6□□□□□ -0.23
VPS39-211ENST00000568755 A0A087WZG4 1122 aa13.59□□□□□ -0.23
VPS39-211ENST00000568755 PRELPP51888 382 aa13.59□□□□□ -0.23
VPS39-211ENST00000568755 TEFQ10587 303 aa13.59□□□□□ -0.23
VPS39-211ENST00000568755 TBC1D9BQ66K14 1250 aa13.58□□□□□ -0.24
VPS39-211ENST00000568755 TTLL6Q8N841 843 aa13.58□□□□□ -0.24
VPS39-211ENST00000568755 TEX13AQ9BXU3 409 aaPredicted RBP13.58□□□□□ -0.24
VPS39-211ENST00000568755 RSPH6AQ9H0K4 717 aa13.58□□□□□ -0.24
VPS39-211ENST00000568755 LMNB1P20700 586 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 IL6STP40189 918 aaPredicted RBP13.57□□□□□ -0.24
VPS39-211ENST00000568755 FSTL1Q12841 308 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 CNGB1Q14028 1251 aaPredicted RBP13.57□□□□□ -0.24
VPS39-211ENST00000568755 BICDL1Q6ZP65 573 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 C2CD5Q86YS7 1000 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
VPS39-211ENST00000568755 PHACTR3Q96KR7 559 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 RRAGCQ9HB90 399 aa13.57□□□□□ -0.24
VPS39-211ENST00000568755 LAMB4A4D0S4 1761 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 H0YIN7 160 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 NFKBIEO00221 500 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 KCNQ3O43525 872 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 PRKAR2BP31323 418 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 FMNL2Q96PY5 1086 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 TBC1D2BQ9UPU7 963 aa13.56□□□□□ -0.24
VPS39-211ENST00000568755 A1BGP04217 495 aa13.55□□□□□ -0.24
VPS39-211ENST00000568755 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
VPS39-211ENST00000568755 PRR5LQ6MZQ0 368 aa13.55□□□□□ -0.24
VPS39-211ENST00000568755 NUP98P52948 1817 aa13.55□□□□□ -0.24
VPS39-211ENST00000568755 GLTPD2A6NH11 291 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 BTBD11A6QL63 1104 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 CAMTA2O94983 1202 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 HTRA3P83110 453 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 BRIP1Q9BX63 1249 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 PDZRN3Q9UPQ7 1066 aa13.54□□□□□ -0.24
VPS39-211ENST00000568755 KDM3BQ7LBC6 1761 aa13.53□□□□□ -0.24
VPS39-211ENST00000568755 CFAP53Q96M91 514 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms