RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 CTCFP49711 727 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 VEGFBP49765 207 aa16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 LBX1P52954 281 aa16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 CHADLQ6NUI6 762 aa16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 TJP1Q07157 1748 aa16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 CARMIL3Q8ND23 1372 aa16.52■□□□□ 0.24
VPS9D1-207ENST00000568691 NRXN2Q9P2S2 1712 aa16.52■□□□□ 0.24
VPS9D1-207ENST00000568691 DLEC1Q9Y238 1755 aa16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 NFIXQ14938 502 aa16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 USPL1Q5W0Q7 1092 aa16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 BCL2L12Q9HB09 334 aa16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 KIF20BQ96Q89 1820 aa16.51■□□□□ 0.23
VPS9D1-207ENST00000568691 CCDC88AQ3V6T2 1871 aa16.5■□□□□ 0.23
VPS9D1-207ENST00000568691 AFDNP55196 1824 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-207ENST00000568691 HSPA8P11142 646 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-207ENST00000568691 PPM1GO15355 546 aaPredicted RBP16.49■□□□□ 0.23
VPS9D1-207ENST00000568691 RGS19P49795 217 aa16.49■□□□□ 0.23
VPS9D1-207ENST00000568691 TTLL6Q8N841 843 aa16.49■□□□□ 0.23
VPS9D1-207ENST00000568691 VIRMAQ69YN4 1812 aaKnown RBP16.49■□□□□ 0.23
VPS9D1-207ENST00000568691 DDNO94850 711 aaPredicted RBP16.48■□□□□ 0.23
VPS9D1-207ENST00000568691 EIF4A2Q14240 407 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-207ENST00000568691 POLKQ9UBT6 870 aa16.48■□□□□ 0.23
VPS9D1-207ENST00000568691 ITGBL1O95965 494 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-207ENST00000568691 SOS1Q07889 1333 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-207ENST00000568691 C2CD5Q86YS7 1000 aa16.46■□□□□ 0.23
VPS9D1-207ENST00000568691 SERPINB2P05120 415 aa16.45■□□□□ 0.22
VPS9D1-207ENST00000568691 CABP4P57796 275 aa16.45■□□□□ 0.22
VPS9D1-207ENST00000568691 ERFEQ4G0M1 354 aa16.45■□□□□ 0.22
VPS9D1-207ENST00000568691 DPY19L2Q6NUT2 758 aa16.45■□□□□ 0.22
VPS9D1-207ENST00000568691 DNAJC10Q8IXB1 793 aa16.44■□□□□ 0.22
VPS9D1-207ENST00000568691 NFATC2IPQ8NCF5 419 aa16.44■□□□□ 0.22
VPS9D1-207ENST00000568691 AIDAQ96BJ3 306 aa16.44■□□□□ 0.22
VPS9D1-207ENST00000568691 MLLT1Q03111 559 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-207ENST00000568691 FER1L6Q2WGJ9 1857 aa16.43■□□□□ 0.22
VPS9D1-207ENST00000568691 DICER1Q9UPY3 1922 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-207ENST00000568691 TNRC18O15417 2968 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 ZNF316A6NFI3 1004 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 TMEM88BA6NKF7 163 aa16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 C21orf2O43822 256 aa16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 ZNF530Q6P9A1 599 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 TAF1DQ9H5J8 278 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 ZNF219Q9P2Y4 722 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 NARFQ9UHQ1 456 aa16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 ANKRD31Q8N7Z5 1873 aa16.42■□□□□ 0.22
VPS9D1-207ENST00000568691 RASSF10A6NK89 507 aa16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 ZPR1O75312 459 aa16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 HSP90AB1P08238 724 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 CYP19A1P11511 503 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 LDHDQ86WU2 507 aa16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 LTBP3Q9NS15 1303 aa16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 ADAMTSL1Q8N6G6 1762 aa16.41■□□□□ 0.22
VPS9D1-207ENST00000568691 COL11A2P13942 1736 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-207ENST00000568691 L3MBTL3Q96JM7 780 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-207ENST00000568691 ZBTB1Q9Y2K1 713 aa16.4■□□□□ 0.22
VPS9D1-207ENST00000568691 COL15A1P39059 1388 aa16.39■□□□□ 0.21
VPS9D1-207ENST00000568691 CCDC85CA6NKD9 419 aa16.39■□□□□ 0.21
VPS9D1-207ENST00000568691 H0YIN7 160 aa16.39■□□□□ 0.21
VPS9D1-207ENST00000568691 AEBP1Q8IUX7 1158 aa16.39■□□□□ 0.21
VPS9D1-207ENST00000568691 CCDC24Q8N4L8 307 aa16.39■□□□□ 0.21
VPS9D1-207ENST00000568691 MTHFSP49914 203 aa16.38■□□□□ 0.21
VPS9D1-207ENST00000568691 PLEKHO1Q53GL0 409 aaPredicted RBP16.38■□□□□ 0.21
VPS9D1-207ENST00000568691 WDR33Q9C0J8 1336 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-207ENST00000568691 DEFB115Q30KQ5 88 aa16.36■□□□□ 0.21
VPS9D1-207ENST00000568691 ZNF622Q969S3 477 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS9D1-207ENST00000568691 TAOK3Q9H2K8 898 aa16.36■□□□□ 0.21
VPS9D1-207ENST00000568691 ZNF541Q9H0D2 1346 aa16.36■□□□□ 0.21
VPS9D1-207ENST00000568691 THSD7BQ9C0I4 1608 aa16.35■□□□□ 0.21
VPS9D1-207ENST00000568691 SLC24A1O60721 1099 aa16.35■□□□□ 0.21
VPS9D1-207ENST00000568691 BICDL1Q6ZP65 573 aa16.35■□□□□ 0.21
VPS9D1-207ENST00000568691 SLX4Q8IY92 1834 aa16.35■□□□□ 0.21
VPS9D1-207ENST00000568691 FMR1Q06787 632 aaKnown RBP eCLIP16.34■□□□□ 0.21
VPS9D1-207ENST00000568691 SLC39A6Q13433 755 aa16.34■□□□□ 0.21
VPS9D1-207ENST00000568691 TBC1D9BQ66K14 1250 aa16.34■□□□□ 0.21
VPS9D1-207ENST00000568691 PRR5LQ6MZQ0 368 aa16.34■□□□□ 0.21
VPS9D1-207ENST00000568691 C7orf43Q8WVR3 580 aa16.34■□□□□ 0.21
VPS9D1-207ENST00000568691 IQCA1LA6NCM1 817 aa16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 AMOTQ4VCS5 1084 aa16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 MAP1SQ66K74 1059 aaPredicted RBP16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 BRIP1Q9BX63 1249 aa16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 LGR6Q9HBX8 967 aa16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 SCN4AP35499 1836 aa16.33■□□□□ 0.2
VPS9D1-207ENST00000568691 TNNT2P45379 298 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-207ENST00000568691 MAP2K1Q02750 393 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-207ENST00000568691 EAPPQ56P03 285 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-207ENST00000568691 TSKSQ9UJT2 592 aa16.32■□□□□ 0.2
VPS9D1-207ENST00000568691 EIF5P55010 431 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 PRPF40BQ6NWY9 871 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 CNTROBQ8N137 903 aa16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 SLC52A2Q9HAB3 445 aa16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 SCN11AQ9UI33 1791 aa16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 LTBP1Q14766 1721 aa16.31■□□□□ 0.2
VPS9D1-207ENST00000568691 MRC1P22897 1456 aa16.3■□□□□ 0.2
VPS9D1-207ENST00000568691 SRGNP10124 158 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 EPHX2P34913 555 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 PDE6BP35913 854 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 C1orf141Q5JVX7 400 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 OLFM4Q6UX06 510 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 MCOLN1Q9GZU1 580 aa16.29■□□□□ 0.2
VPS9D1-207ENST00000568691 PDE4DIPQ5VU43 2346 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms