RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 ZBTB1Q9Y2K1 713 aa21.04■□□□□ 0.96
NME3-211ENST00000568561 COL15A1P39059 1388 aa21.04■□□□□ 0.96
NME3-211ENST00000568561 ZPR1O75312 459 aa21.03■□□□□ 0.96
NME3-211ENST00000568561 SBF1O95248 1867 aa21.03■□□□□ 0.96
NME3-211ENST00000568561 NRXN2Q9P2S2 1712 aa21.02■□□□□ 0.96
NME3-211ENST00000568561 TM4SF1P30408 202 aa21.02■□□□□ 0.96
NME3-211ENST00000568561 DALRD3Q5D0E6 543 aaKnown RBP21.02■□□□□ 0.96
NME3-211ENST00000568561 C9orf131Q5VYM1 1079 aa21.02■□□□□ 0.96
NME3-211ENST00000568561 SIPA1L3O60292 1781 aaPredicted RBP21.01■□□□□ 0.95
NME3-211ENST00000568561 DLEC1Q9Y238 1755 aa21.01■□□□□ 0.95
NME3-211ENST00000568561 NFIXQ14938 502 aa20.99■□□□□ 0.95
NME3-211ENST00000568561 NARFQ9UHQ1 456 aa20.99■□□□□ 0.95
NME3-211ENST00000568561 U2SURPO15042 1029 aaKnown RBP20.98■□□□□ 0.95
NME3-211ENST00000568561 CANXP27824 592 aaKnown RBP20.98■□□□□ 0.95
NME3-211ENST00000568561 BCL2L12Q9HB09 334 aa20.98■□□□□ 0.95
NME3-211ENST00000568561 SCN7AQ01118 1682 aa20.97■□□□□ 0.95
NME3-211ENST00000568561 RNF181Q9P0P0 153 aa20.97■□□□□ 0.95
NME3-211ENST00000568561 CARMIL3Q8ND23 1372 aa20.97■□□□□ 0.95
NME3-211ENST00000568561 TOMM70O94826 608 aa20.96■□□□□ 0.95
NME3-211ENST00000568561 ANKRD31Q8N7Z5 1873 aa20.95■□□□□ 0.94
NME3-211ENST00000568561 TTC5Q8N0Z6 440 aa20.95■□□□□ 0.94
NME3-211ENST00000568561 VSIG10Q8N0Z9 540 aa20.95■□□□□ 0.94
NME3-211ENST00000568561 TNRC6CQ9HCJ0 1690 aaKnown RBP20.95■□□□□ 0.94
NME3-211ENST00000568561 WDR90Q96KV7 1748 aa20.95■□□□□ 0.94
NME3-211ENST00000568561 CCDC88AQ3V6T2 1871 aa20.94■□□□□ 0.94
NME3-211ENST00000568561 RASSF7Q02833 373 aa20.94■□□□□ 0.94
NME3-211ENST00000568561 BICDL1Q6ZP65 573 aa20.94■□□□□ 0.94
NME3-211ENST00000568561 TIAM2Q8IVF5 1701 aa20.93■□□□□ 0.94
NME3-211ENST00000568561 SERPINB2P05120 415 aa20.93■□□□□ 0.94
NME3-211ENST00000568561 IL17REQ8NFR9 667 aa20.93■□□□□ 0.94
NME3-211ENST00000568561 ZNF496Q96IT1 587 aaPredicted RBP20.93■□□□□ 0.94
NME3-211ENST00000568561 COL11A2P13942 1736 aaPredicted RBP20.92■□□□□ 0.94
NME3-211ENST00000568561 TEFQ10587 303 aa20.92■□□□□ 0.94
NME3-211ENST00000568561 ZNF330Q9Y3S2 320 aaPredicted RBP20.92■□□□□ 0.94
NME3-211ENST00000568561 NPC1L1Q9UHC9 1359 aa20.92■□□□□ 0.94
NME3-211ENST00000568561 APLP1P51693 650 aa20.91■□□□□ 0.94
NME3-211ENST00000568561 HEG1Q9ULI3 1381 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 GNAT3A8MTJ3 354 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 EIF5P55010 431 aaKnown RBP20.9■□□□□ 0.94
NME3-211ENST00000568561 IFFO2Q5TF58 517 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 C2CD5Q86YS7 1000 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 GAS2L2Q8NHY3 880 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 CACNA1SQ13698 1873 aa20.9■□□□□ 0.94
NME3-211ENST00000568561 KDM2BQ8NHM5 1336 aa20.89■□□□□ 0.93
NME3-211ENST00000568561 STARD3NLO95772 234 aa20.89■□□□□ 0.93
NME3-211ENST00000568561 PRELPP51888 382 aa20.89■□□□□ 0.93
NME3-211ENST00000568561 ZNF790Q6PG37 636 aa20.89■□□□□ 0.93
NME3-211ENST00000568561 C16orf71Q8IYS4 520 aaPredicted RBP20.89■□□□□ 0.93
NME3-211ENST00000568561 BCORQ6W2J9 1755 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 HTRA3P83110 453 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 CCDC24Q8N4L8 307 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 RBM46Q8TBY0 533 aaKnown RBP20.88■□□□□ 0.93
NME3-211ENST00000568561 PHACTR3Q96KR7 559 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 RRAGCQ9HB90 399 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 TBC1D2BQ9UPU7 963 aa20.88■□□□□ 0.93
NME3-211ENST00000568561 PRKAR2BP31323 418 aa20.87■□□□□ 0.93
NME3-211ENST00000568561 TBC1D9BQ66K14 1250 aa20.87■□□□□ 0.93
NME3-211ENST00000568561 KCNQ3O43525 872 aa20.86■□□□□ 0.93
NME3-211ENST00000568561 TTLL6Q8N841 843 aa20.86■□□□□ 0.93
NME3-211ENST00000568561 CEMIPQ8WUJ3 1361 aa20.85■□□□□ 0.93
NME3-211ENST00000568561 A0A087WZG4 1122 aa20.85■□□□□ 0.93
NME3-211ENST00000568561 A1BGP04217 495 aa20.85■□□□□ 0.93
NME3-211ENST00000568561 H0YIN7 160 aa20.84■□□□□ 0.93
NME3-211ENST00000568561 DNAJC5GQ8N7S2 189 aa20.84■□□□□ 0.93
NME3-211ENST00000568561 FMNL2Q96PY5 1086 aa20.84■□□□□ 0.93
NME3-211ENST00000568561 RSPH6AQ9H0K4 717 aa20.84■□□□□ 0.93
NME3-211ENST00000568561 ZNF219Q9P2Y4 722 aaPredicted RBP20.84■□□□□ 0.93
NME3-211ENST00000568561 NFKBIEO00221 500 aa20.83■□□□□ 0.93
NME3-211ENST00000568561 PIP4K2AP48426 406 aaPredicted RBP20.83■□□□□ 0.93
NME3-211ENST00000568561 PRR5LQ6MZQ0 368 aa20.83■□□□□ 0.93
NME3-211ENST00000568561 FER1L6Q2WGJ9 1857 aa20.82■□□□□ 0.92
NME3-211ENST00000568561 BTBD11A6QL63 1104 aa20.82■□□□□ 0.92
NME3-211ENST00000568561 LMNB1P20700 586 aa20.82■□□□□ 0.92
NME3-211ENST00000568561 IL6STP40189 918 aaPredicted RBP20.82■□□□□ 0.92
NME3-211ENST00000568561 ZNF622Q969S3 477 aaKnown RBP eCLIP20.82■□□□□ 0.92
NME3-211ENST00000568561 CFAP53Q96M91 514 aa20.82■□□□□ 0.92
NME3-211ENST00000568561 TEX13AQ9BXU3 409 aaPredicted RBP20.82■□□□□ 0.92
NME3-211ENST00000568561 DICER1Q9UPY3 1922 aaKnown RBP20.81■□□□□ 0.92
NME3-211ENST00000568561 PRAMEF22A3QJZ6 481 aa20.81■□□□□ 0.92
NME3-211ENST00000568561 CAMTA2O94983 1202 aa20.8■□□□□ 0.92
NME3-211ENST00000568561 FSTL1Q12841 308 aa20.8■□□□□ 0.92
NME3-211ENST00000568561 SLX4Q8IY92 1834 aa20.8■□□□□ 0.92
NME3-211ENST00000568561 ARFGEF2Q9Y6D5 1785 aa20.8■□□□□ 0.92
NME3-211ENST00000568561 ZC3H4Q9UPT8 1303 aaKnown RBP20.79■□□□□ 0.92
NME3-211ENST00000568561 MCM10Q7L590 875 aa20.79■□□□□ 0.92
NME3-211ENST00000568561 BRIP1Q9BX63 1249 aa20.79■□□□□ 0.92
NME3-211ENST00000568561 C21orf2O43822 256 aa20.78■□□□□ 0.92
NME3-211ENST00000568561 U2AF1L5P0DN76 240 aaPredicted RBP20.78■□□□□ 0.92
NME3-211ENST00000568561 PPP2R1AP30153 589 aa20.78■□□□□ 0.92
NME3-211ENST00000568561 U2AF1Q01081 240 aaKnown RBP eCLIP20.78■□□□□ 0.92
NME3-211ENST00000568561 USP16Q9Y5T5 823 aa20.78■□□□□ 0.92
NME3-211ENST00000568561 GLTPD2A6NH11 291 aa20.77■□□□□ 0.92
NME3-211ENST00000568561 PDE6BP35913 854 aa20.77■□□□□ 0.92
NME3-211ENST00000568561 DCTN1Q14203 1278 aa20.77■□□□□ 0.92
NME3-211ENST00000568561 NPM2Q86SE8 214 aaKnown RBP20.77■□□□□ 0.92
NME3-211ENST00000568561 DZIP3Q86Y13 1208 aaKnown RBP20.77■□□□□ 0.92
NME3-211ENST00000568561 CNBD1Q8NA66 436 aa20.77■□□□□ 0.92
NME3-211ENST00000568561 NPHP1O15259 732 aa20.76■□□□□ 0.91
NME3-211ENST00000568561 SMC1BQ8NDV3 1235 aa20.76■□□□□ 0.91
NME3-211ENST00000568561 SETDB2Q96T68 719 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms