RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KIF3CO14782 793 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 ZPR1O75312 459 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 USPL1Q5W0Q7 1092 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 VSIG10Q8N0Z9 540 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 PIM2Q9P1W9 311 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 ZBTB1Q9Y2K1 713 aa20.15■□□□□ 0.82
CLN3-236ENST00000568558 NARFQ9UHQ1 456 aa20.14■□□□□ 0.81
CLN3-236ENST00000568558 SCN7AQ01118 1682 aa20.13■□□□□ 0.81
CLN3-236ENST00000568558 U2SURPO15042 1029 aaKnown RBP20.13■□□□□ 0.81
CLN3-236ENST00000568558 CNGB1Q14028 1251 aaPredicted RBP20.13■□□□□ 0.81
CLN3-236ENST00000568558 HSPA6P17066 643 aa20.12■□□□□ 0.81
CLN3-236ENST00000568558 CHRNA5P30532 468 aa20.11■□□□□ 0.81
CLN3-236ENST00000568558 DALRD3Q5D0E6 543 aaKnown RBP20.11■□□□□ 0.81
CLN3-236ENST00000568558 GAS2L2Q8NHY3 880 aa20.11■□□□□ 0.81
CLN3-236ENST00000568558 NFIXQ14938 502 aa20.1■□□□□ 0.81
CLN3-236ENST00000568558 TTC5Q8N0Z6 440 aa20.1■□□□□ 0.81
CLN3-236ENST00000568558 IL17REQ8NFR9 667 aa20.1■□□□□ 0.81
CLN3-236ENST00000568558 BCL2L12Q9HB09 334 aa20.1■□□□□ 0.81
CLN3-236ENST00000568558 CCDC88AQ3V6T2 1871 aa20.09■□□□□ 0.81
CLN3-236ENST00000568558 ANKRD31Q8N7Z5 1873 aa20.09■□□□□ 0.81
CLN3-236ENST00000568558 GNAT3A8MTJ3 354 aa20.09■□□□□ 0.81
CLN3-236ENST00000568558 TEFQ10587 303 aa20.09■□□□□ 0.81
CLN3-236ENST00000568558 CANXP27824 592 aaKnown RBP20.08■□□□□ 0.81
CLN3-236ENST00000568558 C9orf131Q5VYM1 1079 aa20.08■□□□□ 0.81
CLN3-236ENST00000568558 HEG1Q9ULI3 1381 aa20.08■□□□□ 0.8
CLN3-236ENST00000568558 TNRC6CQ9HCJ0 1690 aaKnown RBP20.07■□□□□ 0.8
CLN3-236ENST00000568558 STARD3NLO95772 234 aa20.07■□□□□ 0.8
CLN3-236ENST00000568558 ZNF790Q6PG37 636 aa20.07■□□□□ 0.8
CLN3-236ENST00000568558 ZNF496Q96IT1 587 aaPredicted RBP20.07■□□□□ 0.8
CLN3-236ENST00000568558 BCORQ6W2J9 1755 aa20.07■□□□□ 0.8
CLN3-236ENST00000568558 CEMIPQ8WUJ3 1361 aa20.07■□□□□ 0.8
CLN3-236ENST00000568558 EIF5P55010 431 aaKnown RBP20.06■□□□□ 0.8
CLN3-236ENST00000568558 SERPINB2P05120 415 aa20.05■□□□□ 0.8
CLN3-236ENST00000568558 NMRK2Q9NPI5 230 aa20.05■□□□□ 0.8
CLN3-236ENST00000568558 COL11A2P13942 1736 aaPredicted RBP20.05■□□□□ 0.8
CLN3-236ENST00000568558 TOMM70O94826 608 aa20.04■□□□□ 0.8
CLN3-236ENST00000568558 CFAP53Q96M91 514 aa20.04■□□□□ 0.8
CLN3-236ENST00000568558 RSPH6AQ9H0K4 717 aa20.04■□□□□ 0.8
CLN3-236ENST00000568558 CARMIL3Q8ND23 1372 aa20.04■□□□□ 0.8
CLN3-236ENST00000568558 TIAM2Q8IVF5 1701 aa20.04■□□□□ 0.8
CLN3-236ENST00000568558 A0A087WZG4 1122 aa20.03■□□□□ 0.8
CLN3-236ENST00000568558 PRKAR2BP31323 418 aa20.03■□□□□ 0.8
CLN3-236ENST00000568558 PHACTR3Q96KR7 559 aa20.03■□□□□ 0.8
CLN3-236ENST00000568558 TEX13AQ9BXU3 409 aaPredicted RBP20.03■□□□□ 0.8
CLN3-236ENST00000568558 RNF181Q9P0P0 153 aa20.03■□□□□ 0.8
CLN3-236ENST00000568558 CACNA1SQ13698 1873 aa20.03■□□□□ 0.8
CLN3-236ENST00000568558 WDR90Q96KV7 1748 aa20.02■□□□□ 0.8
CLN3-236ENST00000568558 FMNL2Q96PY5 1086 aa20.02■□□□□ 0.8
CLN3-236ENST00000568558 DLG5Q8TDM6 1919 aa20.01■□□□□ 0.79
CLN3-236ENST00000568558 IL6STP40189 918 aaPredicted RBP20■□□□□ 0.79
CLN3-236ENST00000568558 BICDL1Q6ZP65 573 aa20■□□□□ 0.79
CLN3-236ENST00000568558 DICER1Q9UPY3 1922 aaKnown RBP20■□□□□ 0.79
CLN3-236ENST00000568558 ARFGEF2Q9Y6D5 1785 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 BTBD11A6QL63 1104 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 PPP2R1AP30153 589 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 TBC1D9BQ66K14 1250 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 C2CD5Q86YS7 1000 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 NUDCQ9Y266 331 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 ZNF330Q9Y3S2 320 aaPredicted RBP19.99■□□□□ 0.79
CLN3-236ENST00000568558 KDM2BQ8NHM5 1336 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 FER1L6Q2WGJ9 1857 aa19.99■□□□□ 0.79
CLN3-236ENST00000568558 KCNQ3O43525 872 aa19.98■□□□□ 0.79
CLN3-236ENST00000568558 A1BGP04217 495 aa19.98■□□□□ 0.79
CLN3-236ENST00000568558 RASSF7Q02833 373 aa19.98■□□□□ 0.79
CLN3-236ENST00000568558 TTLL6Q8N841 843 aa19.98■□□□□ 0.79
CLN3-236ENST00000568558 H0YIN7 160 aa19.97■□□□□ 0.79
CLN3-236ENST00000568558 APLP1P51693 650 aa19.97■□□□□ 0.79
CLN3-236ENST00000568558 RBM46Q8TBY0 533 aaKnown RBP19.97■□□□□ 0.79
CLN3-236ENST00000568558 TBC1D2BQ9UPU7 963 aa19.97■□□□□ 0.79
CLN3-236ENST00000568558 LAMB4A4D0S4 1761 aa19.97■□□□□ 0.79
CLN3-236ENST00000568558 ZC3H4Q9UPT8 1303 aaKnown RBP19.97■□□□□ 0.79
CLN3-236ENST00000568558 U2AF1L5P0DN76 240 aaPredicted RBP19.96■□□□□ 0.79
CLN3-236ENST00000568558 U2AF1Q01081 240 aaKnown RBP eCLIP19.96■□□□□ 0.79
CLN3-236ENST00000568558 PRR5LQ6MZQ0 368 aa19.95■□□□□ 0.78
CLN3-236ENST00000568558 C16orf71Q8IYS4 520 aaPredicted RBP19.95■□□□□ 0.78
CLN3-236ENST00000568558 CAMTA2O94983 1202 aa19.94■□□□□ 0.78
CLN3-236ENST00000568558 LMNB1P20700 586 aa19.94■□□□□ 0.78
CLN3-236ENST00000568558 PRELPP51888 382 aa19.94■□□□□ 0.78
CLN3-236ENST00000568558 NPM2Q86SE8 214 aaKnown RBP19.94■□□□□ 0.78
CLN3-236ENST00000568558 RTF1Q92541 710 aaKnown RBP19.94■□□□□ 0.78
CLN3-236ENST00000568558 BRIP1Q9BX63 1249 aa19.94■□□□□ 0.78
CLN3-236ENST00000568558 USP16Q9Y5T5 823 aa19.94■□□□□ 0.78
CLN3-236ENST00000568558 KDM3BQ7LBC6 1761 aa19.93■□□□□ 0.78
CLN3-236ENST00000568558 SLX4Q8IY92 1834 aa19.93■□□□□ 0.78
CLN3-236ENST00000568558 MCM10Q7L590 875 aa19.93■□□□□ 0.78
CLN3-236ENST00000568558 RRAGCQ9HB90 399 aa19.93■□□□□ 0.78
CLN3-236ENST00000568558 PDZRN3Q9UPQ7 1066 aa19.93■□□□□ 0.78
CLN3-236ENST00000568558 NFKBIEO00221 500 aa19.92■□□□□ 0.78
CLN3-236ENST00000568558 PDE6BP35913 854 aa19.92■□□□□ 0.78
CLN3-236ENST00000568558 DZIP3Q86Y13 1208 aaKnown RBP19.92■□□□□ 0.78
CLN3-236ENST00000568558 CCDC24Q8N4L8 307 aa19.92■□□□□ 0.78
CLN3-236ENST00000568558 PRAMEF22A3QJZ6 481 aa19.91■□□□□ 0.78
CLN3-236ENST00000568558 FSTL1Q12841 308 aa19.91■□□□□ 0.78
CLN3-236ENST00000568558 SETDB2Q96T68 719 aa19.91■□□□□ 0.78
CLN3-236ENST00000568558 HTATSF1O43719 755 aaKnown RBP19.9■□□□□ 0.78
CLN3-236ENST00000568558 SNRPA1P09661 255 aaKnown RBP19.9■□□□□ 0.78
CLN3-236ENST00000568558 PIP4K2AP48426 406 aaPredicted RBP19.9■□□□□ 0.78
CLN3-236ENST00000568558 DCTN1Q14203 1278 aa19.9■□□□□ 0.78
CLN3-236ENST00000568558 CNBD1Q8NA66 436 aa19.9■□□□□ 0.78
CLN3-236ENST00000568558 ZNF622Q969S3 477 aaKnown RBP eCLIP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms