RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 IBTKQ9P2D0 1353 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-211ENST00000568373 WDR17Q8IZU2 1322 aa22.44■■□□□ 1.18
SMPD3-211ENST00000568373 ABCA3Q99758 1704 aa22.44■■□□□ 1.18
SMPD3-211ENST00000568373 HSP90AB1P08238 724 aaKnown RBP22.44■■□□□ 1.18
SMPD3-211ENST00000568373 SLC39A6Q13433 755 aa22.44■■□□□ 1.18
SMPD3-211ENST00000568373 LRRCC1Q9C099 1032 aa22.44■■□□□ 1.18
SMPD3-211ENST00000568373 OSBPL3Q9H4L5 887 aa22.43■■□□□ 1.18
SMPD3-211ENST00000568373 EIF5BO60841 1220 aaKnown RBP22.43■■□□□ 1.18
SMPD3-211ENST00000568373 KSR2Q6VAB6 950 aa22.43■■□□□ 1.18
SMPD3-211ENST00000568373 SSH3Q8TE77 659 aa22.43■■□□□ 1.18
SMPD3-211ENST00000568373 DDX21Q9NR30 783 aaKnown RBP eCLIP22.43■■□□□ 1.18
SMPD3-211ENST00000568373 C5P01031 1676 aa22.42■■□□□ 1.18
SMPD3-211ENST00000568373 MAP3K2Q9Y2U5 619 aa22.42■■□□□ 1.18
SMPD3-211ENST00000568373 PARP4Q9UKK3 1724 aaKnown RBP22.42■■□□□ 1.18
SMPD3-211ENST00000568373 NBPF7P0C2Y1 421 aaPredicted RBP22.42■■□□□ 1.18
SMPD3-211ENST00000568373 COL5A2P05997 1499 aaPredicted RBP22.41■■□□□ 1.18
SMPD3-211ENST00000568373 NHSL1Q5SYE7 1610 aa22.41■■□□□ 1.18
SMPD3-211ENST00000568373 PDE1AP54750 535 aa22.41■■□□□ 1.18
SMPD3-211ENST00000568373 SDSP20132 328 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 SALL3Q9BXA9 1300 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 ALDH1L1O75891 902 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 POLA2Q14181 598 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 PDIA6Q15084 440 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 TOM1L2Q6ZVM7 507 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 PPP1R42Q7Z4L9 355 aa22.4■■□□□ 1.18
SMPD3-211ENST00000568373 DDX58O95786 925 aaKnown RBP22.38■■□□□ 1.17
SMPD3-211ENST00000568373 ZNF496Q96IT1 587 aaPredicted RBP22.38■■□□□ 1.17
SMPD3-211ENST00000568373 NFKBIBQ15653 356 aa22.38■■□□□ 1.17
SMPD3-211ENST00000568373 TTC5Q8N0Z6 440 aa22.37■■□□□ 1.17
SMPD3-211ENST00000568373 PCDH11XQ9BZA7 1347 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 PCDH11YQ9BZA8 1340 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 SRGAP3O43295 1099 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 RAB11FIP3O75154 756 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 CABP4P57796 275 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 CASC1Q6TDU7 716 aa22.36■■□□□ 1.17
SMPD3-211ENST00000568373 SNRPA1P09661 255 aaKnown RBP22.35■■□□□ 1.17
SMPD3-211ENST00000568373 MX1P20591 662 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 ZCRB1Q8TBF4 217 aaKnown RBP22.35■■□□□ 1.17
SMPD3-211ENST00000568373 KIF2CQ99661 725 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 ANTXR1Q9H6X2 564 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 PIP4K2BP78356 416 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 LINS1Q8NG48 757 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 FMNL2Q96PY5 1086 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 CARD10Q9BWT7 1032 aa22.35■■□□□ 1.17
SMPD3-211ENST00000568373 SLKQ9H2G2 1235 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-211ENST00000568373 C9orf78Q9NZ63 289 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-211ENST00000568373 TUBGCP6Q96RT7 1819 aa22.34■■□□□ 1.17
SMPD3-211ENST00000568373 HSCBQ8IWL3 235 aa22.34■■□□□ 1.17
SMPD3-211ENST00000568373 SNX21Q969T3 373 aa22.34■■□□□ 1.17
SMPD3-211ENST00000568373 SURF6O75683 361 aaKnown RBP22.34■■□□□ 1.17
SMPD3-211ENST00000568373 AIMP1Q12904 312 aaKnown RBP22.34■■□□□ 1.17
SMPD3-211ENST00000568373 MTX1Q13505 466 aa22.34■■□□□ 1.17
SMPD3-211ENST00000568373 HDAC5Q9UQL6 1122 aa22.34■■□□□ 1.17
SMPD3-211ENST00000568373 CWF19L2Q2TBE0 894 aaKnown RBP22.33■■□□□ 1.17
SMPD3-211ENST00000568373 CERKQ8TCT0 537 aa22.33■■□□□ 1.17
SMPD3-211ENST00000568373 STAP2Q9UGK3 403 aa22.33■■□□□ 1.17
SMPD3-211ENST00000568373 IL2RBP14784 551 aa22.32■■□□□ 1.16
SMPD3-211ENST00000568373 UBAP1LF5GYI3 381 aa22.31■■□□□ 1.16
SMPD3-211ENST00000568373 MYL6BP14649 208 aa22.31■■□□□ 1.16
SMPD3-211ENST00000568373 TSHZ3Q63HK5 1081 aa22.31■■□□□ 1.16
SMPD3-211ENST00000568373 USP16Q9Y5T5 823 aa22.31■■□□□ 1.16
SMPD3-211ENST00000568373 LARP1Q6PKG0 1096 aaKnown RBP22.3■■□□□ 1.16
SMPD3-211ENST00000568373 RIC3Q7Z5B4 369 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 GLI3P10071 1580 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 UTYO14607 1347 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 AOX1Q06278 1338 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 GRM8O00222 908 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 HSP90AB4PQ58FF6 505 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 LRP10Q7Z4F1 713 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 RHPN1Q8TCX5 695 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 XAGE3Q8WTP9 111 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 KIF1BPQ96EK5 621 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 IL1RAPL2Q9NP60 686 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 STRN4Q9NRL3 753 aa22.3■■□□□ 1.16
SMPD3-211ENST00000568373 LAMB4A4D0S4 1761 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 NKX1-1Q15270 411 aaPredicted RBP22.29■■□□□ 1.16
SMPD3-211ENST00000568373 USP26Q9BXU7 913 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 ERVV-2B6SEH9 535 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 EVA1CP58658 441 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 COPS6Q7L5N1 327 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 SHANK3Q9BYB0 1731 aa22.29■■□□□ 1.16
SMPD3-211ENST00000568373 IGKV5-2P06315 115 aa22.27■■□□□ 1.16
SMPD3-211ENST00000568373 TOM1O60784 492 aa22.27■■□□□ 1.16
SMPD3-211ENST00000568373 REC8O95072 547 aa22.27■■□□□ 1.16
SMPD3-211ENST00000568373 NEXNQ0ZGT2 675 aa22.27■■□□□ 1.16
SMPD3-211ENST00000568373 METTL22Q9BUU2 404 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-211ENST00000568373 UBR2Q8IWV8 1755 aa22.26■■□□□ 1.15
SMPD3-211ENST00000568373 ERC2O15083 957 aa22.26■■□□□ 1.15
SMPD3-211ENST00000568373 FRAT2O75474 233 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-211ENST00000568373 SPRYD3Q8NCJ5 442 aa22.26■■□□□ 1.15
SMPD3-211ENST00000568373 NEURL1BA8MQ27 555 aa22.25■■□□□ 1.15
SMPD3-211ENST00000568373 ANKRD13DQ6ZTN6 518 aa22.25■■□□□ 1.15
SMPD3-211ENST00000568373 NUTM1Q86Y26 1132 aa22.24■■□□□ 1.15
SMPD3-211ENST00000568373 KAZALD1Q96I82 304 aa22.24■■□□□ 1.15
SMPD3-211ENST00000568373 SUCLG2Q96I99 432 aa22.24■■□□□ 1.15
SMPD3-211ENST00000568373 ROBO1Q9Y6N7 1651 aa22.24■■□□□ 1.15
SMPD3-211ENST00000568373 DEKP35659 375 aaKnown RBP22.24■■□□□ 1.15
SMPD3-211ENST00000568373 PAPPAQ13219 1627 aa22.24■■□□□ 1.15
SMPD3-211ENST00000568373 PIP4K2AP48426 406 aaPredicted RBP22.23■■□□□ 1.15
SMPD3-211ENST00000568373 DDX54Q8TDD1 881 aaKnown RBP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms