RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 USP17L1Q7RTZ2 530 aa8.79□□□□□ -1
VPS39-209ENST00000568029 PLPP7Q8NBV4 271 aa8.79□□□□□ -1
VPS39-209ENST00000568029 SIAH2O43255 324 aa8.78□□□□□ -1
VPS39-209ENST00000568029 PDE4CQ08493 712 aa8.78□□□□□ -1
VPS39-209ENST00000568029 KANK4Q5T7N3 995 aaPredicted RBP8.78□□□□□ -1
VPS39-209ENST00000568029 GGT6Q6P531 493 aa8.78□□□□□ -1
VPS39-209ENST00000568029 TRAF7Q6Q0C0 670 aa8.78□□□□□ -1
VPS39-209ENST00000568029 ZNF598Q86UK7 904 aaKnown RBP8.78□□□□□ -1
VPS39-209ENST00000568029 KCTD15Q96SI1 283 aaPredicted RBP8.78□□□□□ -1
VPS39-209ENST00000568029 UGGT1Q9NYU2 1555 aa8.78□□□□□ -1
VPS39-209ENST00000568029 LRP6O75581 1613 aa8.77□□□□□ -1.01
VPS39-209ENST00000568029 TNRQ92752 1358 aa8.77□□□□□ -1.01
VPS39-209ENST00000568029 ATG7O95352 703 aa8.77□□□□□ -1.01
VPS39-209ENST00000568029 VRTNQ9H8Y1 702 aa8.77□□□□□ -1.01
VPS39-209ENST00000568029 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.76□□□□□ -1.01
VPS39-209ENST00000568029 RFX1P22670 979 aa8.76□□□□□ -1.01
VPS39-209ENST00000568029 ELOAQ14241 798 aaKnown RBP8.76□□□□□ -1.01
VPS39-209ENST00000568029 VASH1Q7L8A9 365 aaPredicted RBP8.76□□□□□ -1.01
VPS39-209ENST00000568029 CCDC85AQ96PX6 553 aaPredicted RBP8.76□□□□□ -1.01
VPS39-209ENST00000568029 DOLKQ9UPQ8 538 aa8.76□□□□□ -1.01
VPS39-209ENST00000568029 PZPP20742 1482 aa8.76□□□□□ -1.01
VPS39-209ENST00000568029 MAP3K1Q13233 1512 aa8.75□□□□□ -1.01
VPS39-209ENST00000568029 ATP5J2-PTCD1G3V325 749 aa8.75□□□□□ -1.01
VPS39-209ENST00000568029 HNRNPMP52272 730 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS39-209ENST00000568029 EML3Q32P44 896 aa8.75□□□□□ -1.01
VPS39-209ENST00000568029 SIRT1Q96EB6 747 aa8.75□□□□□ -1.01
VPS39-209ENST00000568029 SPAG9O60271 1321 aaKnown RBP8.75□□□□□ -1.01
VPS39-209ENST00000568029 KDM5DQ9BY66 1539 aa8.75□□□□□ -1.01
VPS39-209ENST00000568029 PHLPP1O60346 1717 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 ADH1CP00326 375 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 GRM5P41594 1212 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 DHX9Q08211 1270 aaKnown RBP8.74□□□□□ -1.01
VPS39-209ENST00000568029 NR5A1Q13285 461 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 NCOA4Q13772 614 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 INTS6LQ5JSJ4 861 aaKnown RBP8.74□□□□□ -1.01
VPS39-209ENST00000568029 ZNF697Q5TEC3 545 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 TRIM50Q86XT4 487 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 CCER1Q8TC90 406 aaPredicted RBP8.74□□□□□ -1.01
VPS39-209ENST00000568029 MRGPRX2Q96LB1 330 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 USTQ9Y2C2 406 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 UBR1Q8IWV7 1749 aa8.74□□□□□ -1.01
VPS39-209ENST00000568029 FMN1Q68DA7 1419 aa8.73□□□□□ -1.01
VPS39-209ENST00000568029 FAM196BA6NMK8 535 aa8.73□□□□□ -1.01
VPS39-209ENST00000568029 PRKD2Q9BZL6 878 aa8.73□□□□□ -1.01
VPS39-209ENST00000568029 NOD1Q9Y239 953 aa8.73□□□□□ -1.01
VPS39-209ENST00000568029 GPATCH8Q9UKJ3 1502 aaKnown RBP8.73□□□□□ -1.01
VPS39-209ENST00000568029 COL16A1Q07092 1604 aaPredicted RBP8.72□□□□□ -1.01
VPS39-209ENST00000568029 USP4Q13107 963 aa8.72□□□□□ -1.01
VPS39-209ENST00000568029 MKRN1Q9UHC7 482 aaKnown RBP8.72□□□□□ -1.01
VPS39-209ENST00000568029 FAM135AQ9P2D6 1515 aa8.71□□□□□ -1.01
VPS39-209ENST00000568029 SETBP1Q9Y6X0 1596 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 ATP1A2P50993 1020 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 ANKLE2Q86XL3 938 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 RETREG2Q8NC44 543 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 TRAIPQ9BWF2 469 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 PKD2L1Q9P0L9 805 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 PCDHB11Q9Y5F2 797 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 TLL2Q9Y6L7 1015 aa8.71□□□□□ -1.02
VPS39-209ENST00000568029 CSB-PGBD3P0DP91 1061 aa8.7□□□□□ -1.02
VPS39-209ENST00000568029 TSGA10IPQ3SY00 556 aa8.7□□□□□ -1.02
VPS39-209ENST00000568029 DEPDC4Q8N2C3 294 aa8.7□□□□□ -1.02
VPS39-209ENST00000568029 IRX2Q9BZI1 471 aaPredicted RBP8.7□□□□□ -1.02
VPS39-209ENST00000568029 FAM135BQ49AJ0 1406 aa8.7□□□□□ -1.02
VPS39-209ENST00000568029 NLRP1Q9C000 1473 aa8.7□□□□□ -1.02
VPS39-209ENST00000568029 ERVH48-1M5A8F1 160 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 PDIA4P13667 645 aaKnown RBP8.69□□□□□ -1.02
VPS39-209ENST00000568029 FSHRP23945 695 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 ERVK-9P63128 1117 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 ARID5BQ14865 1188 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 LARP1Q6PKG0 1096 aaKnown RBP8.69□□□□□ -1.02
VPS39-209ENST00000568029 LARGE2Q8N3Y3 721 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 SNIP1Q8TAD8 396 aaKnown RBP8.69□□□□□ -1.02
VPS39-209ENST00000568029 MIA2Q96PC5 1412 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 NCOA2Q15596 1464 aa8.69□□□□□ -1.02
VPS39-209ENST00000568029 CEP152O94986 1710 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L15C9J2P7 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L10C9JJH3 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L13C9JLJ4 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L12C9JPN9 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L11C9JVI0 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L21D6R901 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L18D6R9N7 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L22D6RA61 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L17D6RBQ6 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L19D6RCP7 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L20D6RJB6 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 GDF9O60383 454 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 MYCP01106 439 aaPredicted RBP8.68□□□□□ -1.02
VPS39-209ENST00000568029 PRR20EP86478 221 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 PRR20CP86479 221 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 PRR20DP86480 221 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 PRR20BP86481 221 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 PRR20AP86496 221 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 USP17L24Q0WX57 530 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 PTK7Q13308 1070 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 CCDC116Q8IYX3 515 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 CDCA7Q9BWT1 371 aaPredicted RBP8.68□□□□□ -1.02
VPS39-209ENST00000568029 CDK11AQ9UQ88 783 aaPredicted RBP8.68□□□□□ -1.02
VPS39-209ENST00000568029 TIAM1Q13009 1591 aa8.68□□□□□ -1.02
VPS39-209ENST00000568029 RASA1P20936 1047 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms