RNA–Protein interactions for RNA: ENST00000567071.5

CAPN3-216, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-216ENST00000567071 GRM1Q13255 1194 aa13.76□□□□□ -0.21
CAPN3-216ENST00000567071 NKX1-1Q15270 411 aaPredicted RBP13.76□□□□□ -0.21
CAPN3-216ENST00000567071 GPR101Q96P66 508 aaPredicted RBP13.76□□□□□ -0.21
CAPN3-216ENST00000567071 DLEC1Q9Y238 1755 aa13.76□□□□□ -0.21
CAPN3-216ENST00000567071 THSD7BQ9C0I4 1608 aa13.75□□□□□ -0.21
CAPN3-216ENST00000567071 TRIM26Q12899 539 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-216ENST00000567071 FKBP8Q14318 412 aa13.75□□□□□ -0.21
CAPN3-216ENST00000567071 CAPNS2Q96L46 248 aa13.75□□□□□ -0.21
CAPN3-216ENST00000567071 TAF1DQ9H5J8 278 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-216ENST00000567071 TSKSQ9UJT2 592 aa13.75□□□□□ -0.21
CAPN3-216ENST00000567071 ZNF831Q5JPB2 1677 aa13.75□□□□□ -0.21
CAPN3-216ENST00000567071 USP42Q9H9J4 1324 aaKnown RBP13.74□□□□□ -0.21
CAPN3-216ENST00000567071 COL5A3P25940 1745 aaPredicted RBP13.74□□□□□ -0.21
CAPN3-216ENST00000567071 POLRMTO00411 1230 aaKnown RBP13.74□□□□□ -0.21
CAPN3-216ENST00000567071 ATG3Q9NT62 314 aa13.74□□□□□ -0.21
CAPN3-216ENST00000567071 SRP68Q9UHB9 627 aaKnown RBP13.74□□□□□ -0.21
CAPN3-216ENST00000567071 KDRP35968 1356 aa13.73□□□□□ -0.21
CAPN3-216ENST00000567071 H0YIN7 160 aa13.73□□□□□ -0.21
CAPN3-216ENST00000567071 SOX10P56693 466 aa13.73□□□□□ -0.21
CAPN3-216ENST00000567071 RAB3GAP2Q9H2M9 1393 aa13.72□□□□□ -0.21
CAPN3-216ENST00000567071 C2CD5Q86YS7 1000 aa13.72□□□□□ -0.21
CAPN3-216ENST00000567071 CNTROBQ8N137 903 aa13.72□□□□□ -0.21
CAPN3-216ENST00000567071 L3MBTL3Q96JM7 780 aaPredicted RBP13.72□□□□□ -0.21
CAPN3-216ENST00000567071 ZPR1O75312 459 aa13.71□□□□□ -0.21
CAPN3-216ENST00000567071 MAP2K2P36507 400 aa13.71□□□□□ -0.21
CAPN3-216ENST00000567071 PNMA8AQ86V59 439 aaPredicted RBP13.71□□□□□ -0.21
CAPN3-216ENST00000567071 TAOK3Q9H2K8 898 aa13.71□□□□□ -0.21
CAPN3-216ENST00000567071 HACL1Q9UJ83 578 aa13.71□□□□□ -0.21
CAPN3-216ENST00000567071 A0A1W2PP64 1363 aa13.71□□□□□ -0.22
CAPN3-216ENST00000567071 FER1L6Q2WGJ9 1857 aa13.7□□□□□ -0.22
CAPN3-216ENST00000567071 RRS1Q15050 365 aaKnown RBP13.7□□□□□ -0.22
CAPN3-216ENST00000567071 CYP4F22Q6NT55 531 aa13.7□□□□□ -0.22
CAPN3-216ENST00000567071 NBPF15Q8N660 670 aa13.7□□□□□ -0.22
CAPN3-216ENST00000567071 SLC12A5Q9H2X9 1139 aa13.7□□□□□ -0.22
CAPN3-216ENST00000567071 MYH14Q7Z406 1995 aaKnown RBP13.7□□□□□ -0.22
CAPN3-216ENST00000567071 LTBP1Q14766 1721 aa13.7□□□□□ -0.22
CAPN3-216ENST00000567071 AFDNP55196 1824 aaKnown RBP13.69□□□□□ -0.22
CAPN3-216ENST00000567071 LTBP3Q9NS15 1303 aa13.69□□□□□ -0.22
CAPN3-216ENST00000567071 FBLN1P23142 703 aa13.69□□□□□ -0.22
CAPN3-216ENST00000567071 TM4SF1P30408 202 aa13.69□□□□□ -0.22
CAPN3-216ENST00000567071 MAP1SQ66K74 1059 aaPredicted RBP13.69□□□□□ -0.22
CAPN3-216ENST00000567071 IFNL2Q8IZJ0 200 aa13.69□□□□□ -0.22
CAPN3-216ENST00000567071 PCGF6Q9BYE7 350 aa13.69□□□□□ -0.22
CAPN3-216ENST00000567071 C21orf2O43822 256 aa13.68□□□□□ -0.22
CAPN3-216ENST00000567071 EPHX2P34913 555 aa13.68□□□□□ -0.22
CAPN3-216ENST00000567071 ZNF622Q969S3 477 aaKnown RBP eCLIP13.68□□□□□ -0.22
CAPN3-216ENST00000567071 DDX21Q9NR30 783 aaKnown RBP eCLIP13.68□□□□□ -0.22
CAPN3-216ENST00000567071 INSRP06213 1382 aa13.68□□□□□ -0.22
CAPN3-216ENST00000567071 CRKLP46109 303 aaKnown RBP13.67□□□□□ -0.22
CAPN3-216ENST00000567071 SLC4A9Q96Q91 983 aa13.67□□□□□ -0.22
CAPN3-216ENST00000567071 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.67□□□□□ -0.22
CAPN3-216ENST00000567071 PDZRN3Q9UPQ7 1066 aa13.67□□□□□ -0.22
CAPN3-216ENST00000567071 ROCK2O75116 1388 aaKnown RBP13.67□□□□□ -0.22
CAPN3-216ENST00000567071 SOGA3Q5TF21 947 aa13.66□□□□□ -0.22
CAPN3-216ENST00000567071 FLT4P35916 1363 aa13.66□□□□□ -0.22
CAPN3-216ENST00000567071 ADAMTSL1Q8N6G6 1762 aa13.66□□□□□ -0.22
CAPN3-216ENST00000567071 USPL1Q5W0Q7 1092 aa13.65□□□□□ -0.22
CAPN3-216ENST00000567071 NRXN2Q9P2S2 1712 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 TRPM7Q96QT4 1865 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 AOC2O75106 756 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 SERPINB2P05120 415 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 PHKG2P15735 406 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 BRPF1P55201 1214 aaPredicted RBP13.64□□□□□ -0.23
CAPN3-216ENST00000567071 HSP90AB2PQ58FF8 381 aa13.64□□□□□ -0.23
CAPN3-216ENST00000567071 HABP4Q5JVS0 413 aaKnown RBP13.64□□□□□ -0.23
CAPN3-216ENST00000567071 KIF24Q5T7B8 1368 aa13.63□□□□□ -0.23
CAPN3-216ENST00000567071 ERVV-2B6SEH9 535 aa13.63□□□□□ -0.23
CAPN3-216ENST00000567071 NFIXQ14938 502 aa13.63□□□□□ -0.23
CAPN3-216ENST00000567071 PTCD1O75127 700 aaKnown RBP13.62□□□□□ -0.23
CAPN3-216ENST00000567071 PDE6BP35913 854 aa13.62□□□□□ -0.23
CAPN3-216ENST00000567071 TLL2Q9Y6L7 1015 aa13.62□□□□□ -0.23
CAPN3-216ENST00000567071 HSP90AB1P08238 724 aaKnown RBP13.61□□□□□ -0.23
CAPN3-216ENST00000567071 RNF123Q5XPI4 1314 aa13.61□□□□□ -0.23
CAPN3-216ENST00000567071 CNKSR1Q969H4 720 aa13.6□□□□□ -0.23
CAPN3-216ENST00000567071 RNF39Q9H2S5 420 aa13.6□□□□□ -0.23
CAPN3-216ENST00000567071 LMOD1P29536 600 aaPredicted RBP13.59□□□□□ -0.23
CAPN3-216ENST00000567071 CABP4P57796 275 aa13.59□□□□□ -0.23
CAPN3-216ENST00000567071 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
CAPN3-216ENST00000567071 TONSLQ96HA7 1378 aa13.58□□□□□ -0.23
CAPN3-216ENST00000567071 DLL1O00548 723 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 CIAPIN1Q6FI81 312 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 BICDL1Q6ZP65 573 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 NARFQ9UHQ1 456 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 ZNF541Q9H0D2 1346 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 CARMIL3Q8ND23 1372 aa13.58□□□□□ -0.24
CAPN3-216ENST00000567071 NCAPD2Q15021 1401 aa13.57□□□□□ -0.24
CAPN3-216ENST00000567071 ADAMTS7Q9UKP4 1686 aa13.57□□□□□ -0.24
CAPN3-216ENST00000567071 HHIPL1Q96JK4 782 aa13.57□□□□□ -0.24
CAPN3-216ENST00000567071 PUS7Q96PZ0 661 aaKnown RBP13.57□□□□□ -0.24
CAPN3-216ENST00000567071 BRIP1Q9BX63 1249 aa13.57□□□□□ -0.24
CAPN3-216ENST00000567071 NPHP1O15259 732 aa13.56□□□□□ -0.24
CAPN3-216ENST00000567071 CCDC93Q567U6 631 aa13.56□□□□□ -0.24
CAPN3-216ENST00000567071 PRPF40BQ6NWY9 871 aaKnown RBP13.56□□□□□ -0.24
CAPN3-216ENST00000567071 GPC2Q8N158 579 aa13.56□□□□□ -0.24
CAPN3-216ENST00000567071 GGNBP2Q9H3C7 697 aa13.56□□□□□ -0.24
CAPN3-216ENST00000567071 CUL9Q8IWT3 2517 aa13.56□□□□□ -0.24
CAPN3-216ENST00000567071 NOGQ13253 232 aa13.55□□□□□ -0.24
CAPN3-216ENST00000567071 CST9Q5W186 159 aa13.55□□□□□ -0.24
CAPN3-216ENST00000567071 INTS5Q6P9B9 1019 aaKnown RBP13.55□□□□□ -0.24
CAPN3-216ENST00000567071 SAPCD2Q86UD0 394 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms