RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SLC34A2O95436 690 aa23.26■■□□□ 1.31
CDH3-205ENST00000566808 INTS5Q6P9B9 1019 aaKnown RBP23.25■■□□□ 1.31
CDH3-205ENST00000566808 TTLL6Q8N841 843 aa23.25■■□□□ 1.31
CDH3-205ENST00000566808 SOS1Q07889 1333 aaPredicted RBP23.25■■□□□ 1.31
CDH3-205ENST00000566808 NFKBIEO00221 500 aa23.24■■□□□ 1.31
CDH3-205ENST00000566808 MTHFSP49914 203 aa23.24■■□□□ 1.31
CDH3-205ENST00000566808 USPL1Q5W0Q7 1092 aa23.24■■□□□ 1.31
CDH3-205ENST00000566808 POTECB2RU33 542 aa23.23■■□□□ 1.31
CDH3-205ENST00000566808 C1orf141Q5JVX7 400 aa23.23■■□□□ 1.31
CDH3-205ENST00000566808 VIRMAQ69YN4 1812 aaKnown RBP23.23■■□□□ 1.31
CDH3-205ENST00000566808 ANKRD31Q8N7Z5 1873 aa23.22■■□□□ 1.31
CDH3-205ENST00000566808 NFIXQ14938 502 aa23.22■■□□□ 1.31
CDH3-205ENST00000566808 DPY19L2Q6NUT2 758 aa23.22■■□□□ 1.31
CDH3-205ENST00000566808 MKRN1Q9UHC7 482 aaKnown RBP23.22■■□□□ 1.31
CDH3-205ENST00000566808 COL15A1P39059 1388 aa23.22■■□□□ 1.31
CDH3-205ENST00000566808 COL11A2P13942 1736 aaPredicted RBP23.22■■□□□ 1.31
CDH3-205ENST00000566808 NFATC2IPQ8NCF5 419 aa23.21■■□□□ 1.31
CDH3-205ENST00000566808 PRDM10Q9NQV6 1147 aa23.21■■□□□ 1.31
CDH3-205ENST00000566808 CNTNAP1P78357 1384 aa23.2■■□□□ 1.3
CDH3-205ENST00000566808 MRC1P22897 1456 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 CARMIL3Q8ND23 1372 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 FOXN1O15353 648 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 CHADLQ6NUI6 762 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 C2CD5Q86YS7 1000 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 NARFQ9UHQ1 456 aa23.19■■□□□ 1.3
CDH3-205ENST00000566808 SCN7AQ01118 1682 aa23.18■■□□□ 1.3
CDH3-205ENST00000566808 H0YIN7 160 aa23.17■■□□□ 1.3
CDH3-205ENST00000566808 SERPINB2P05120 415 aa23.17■■□□□ 1.3
CDH3-205ENST00000566808 TNNT2P45379 298 aaPredicted RBP23.17■■□□□ 1.3
CDH3-205ENST00000566808 DNAJC10Q8IXB1 793 aa23.17■■□□□ 1.3
CDH3-205ENST00000566808 SCN4AP35499 1836 aa23.17■■□□□ 1.3
CDH3-205ENST00000566808 ARFGEF2Q9Y6D5 1785 aa23.17■■□□□ 1.3
CDH3-205ENST00000566808 CACNA1SQ13698 1873 aa23.16■■□□□ 1.3
CDH3-205ENST00000566808 UBR2Q8IWV8 1755 aa23.15■■□□□ 1.3
CDH3-205ENST00000566808 CTCFP49711 727 aaPredicted RBP23.15■■□□□ 1.3
CDH3-205ENST00000566808 ERFEQ4G0M1 354 aa23.15■■□□□ 1.3
CDH3-205ENST00000566808 AIDAQ96BJ3 306 aa23.15■■□□□ 1.3
CDH3-205ENST00000566808 CYP19A1P11511 503 aaPredicted RBP23.14■■□□□ 1.29
CDH3-205ENST00000566808 LTBP3Q9NS15 1303 aa23.13■■□□□ 1.29
CDH3-205ENST00000566808 AEBP1Q8IUX7 1158 aa23.13■■□□□ 1.29
CDH3-205ENST00000566808 BCL2L12Q9HB09 334 aa23.13■■□□□ 1.29
CDH3-205ENST00000566808 PDZRN3Q9UPQ7 1066 aa23.12■■□□□ 1.29
CDH3-205ENST00000566808 ZBTB1Q9Y2K1 713 aa23.12■■□□□ 1.29
CDH3-205ENST00000566808 PASKQ96RG2 1323 aa23.11■■□□□ 1.29
CDH3-205ENST00000566808 POTEIP0CG38 1075 aa23.1■■□□□ 1.29
CDH3-205ENST00000566808 POTEJP0CG39 1038 aa23.1■■□□□ 1.29
CDH3-205ENST00000566808 SLC52A2Q9HAB3 445 aa23.1■■□□□ 1.29
CDH3-205ENST00000566808 LDHDQ86WU2 507 aa23.09■■□□□ 1.29
CDH3-205ENST00000566808 TAOK3Q9H2K8 898 aa23.09■■□□□ 1.29
CDH3-205ENST00000566808 IQCA1LA6NCM1 817 aa23.08■■□□□ 1.29
CDH3-205ENST00000566808 C21orf2O43822 256 aa23.08■■□□□ 1.29
CDH3-205ENST00000566808 SLX4Q8IY92 1834 aa23.08■■□□□ 1.28
CDH3-205ENST00000566808 PDE6BP35913 854 aa23.07■■□□□ 1.28
CDH3-205ENST00000566808 AKAP4Q5JQC9 854 aa23.07■■□□□ 1.28
CDH3-205ENST00000566808 SULT6B1Q6IMI4 303 aa23.07■■□□□ 1.28
CDH3-205ENST00000566808 ZNF622Q969S3 477 aaKnown RBP eCLIP23.07■■□□□ 1.28
CDH3-205ENST00000566808 ADAMTSL1Q8N6G6 1762 aa23.06■■□□□ 1.28
CDH3-205ENST00000566808 DDNO94850 711 aaPredicted RBP23.06■■□□□ 1.28
CDH3-205ENST00000566808 VEGFBP49765 207 aa23.06■■□□□ 1.28
CDH3-205ENST00000566808 VSIG10Q8N0Z9 540 aa23.06■■□□□ 1.28
CDH3-205ENST00000566808 BRIP1Q9BX63 1249 aa23.06■■□□□ 1.28
CDH3-205ENST00000566808 TMEM88BA6NKF7 163 aa23.05■■□□□ 1.28
CDH3-205ENST00000566808 L3MBTL3Q96JM7 780 aaPredicted RBP23.05■■□□□ 1.28
CDH3-205ENST00000566808 WBP1LQ9NX94 342 aa23.05■■□□□ 1.28
CDH3-205ENST00000566808 ZNF219Q9P2Y4 722 aaPredicted RBP23.05■■□□□ 1.28
CDH3-205ENST00000566808 LBX1P52954 281 aa23.04■■□□□ 1.28
CDH3-205ENST00000566808 FAM161AQ3B820 660 aa23.04■■□□□ 1.28
CDH3-205ENST00000566808 BICDL1Q6ZP65 573 aa23.04■■□□□ 1.28
CDH3-205ENST00000566808 THSD7BQ9C0I4 1608 aa23.04■■□□□ 1.28
CDH3-205ENST00000566808 SLC39A6Q13433 755 aa23.03■■□□□ 1.28
CDH3-205ENST00000566808 SOGA3Q5TF21 947 aa23.03■■□□□ 1.28
CDH3-205ENST00000566808 ABHD8Q96I13 439 aa23.03■■□□□ 1.28
CDH3-205ENST00000566808 BCORQ6W2J9 1755 aa23.02■■□□□ 1.28
CDH3-205ENST00000566808 A0A087WZG4 1122 aa23.02■■□□□ 1.28
CDH3-205ENST00000566808 TAF1DQ9H5J8 278 aaPredicted RBP23.02■■□□□ 1.28
CDH3-205ENST00000566808 CANXP27824 592 aaKnown RBP23.01■■□□□ 1.27
CDH3-205ENST00000566808 EIF5P55010 431 aaKnown RBP23.01■■□□□ 1.27
CDH3-205ENST00000566808 PRR5LQ6MZQ0 368 aa23.01■■□□□ 1.27
CDH3-205ENST00000566808 TBC1D9BQ66K14 1250 aa23■■□□□ 1.27
CDH3-205ENST00000566808 CNKSR1Q969H4 720 aa23■■□□□ 1.27
CDH3-205ENST00000566808 RNMTO43148 476 aaKnown RBP22.99■■□□□ 1.27
CDH3-205ENST00000566808 HSPA8P11142 646 aaKnown RBP22.99■■□□□ 1.27
CDH3-205ENST00000566808 STYK1Q6J9G0 422 aa22.99■■□□□ 1.27
CDH3-205ENST00000566808 PRPF40BQ6NWY9 871 aaKnown RBP22.99■■□□□ 1.27
CDH3-205ENST00000566808 LGR6Q9HBX8 967 aa22.99■■□□□ 1.27
CDH3-205ENST00000566808 STARD3NLO95772 234 aa22.98■■□□□ 1.27
CDH3-205ENST00000566808 ITGBL1O95965 494 aaPredicted RBP22.98■■□□□ 1.27
CDH3-205ENST00000566808 RASSF10A6NK89 507 aa22.97■■□□□ 1.27
CDH3-205ENST00000566808 IL13P35225 146 aa22.97■■□□□ 1.27
CDH3-205ENST00000566808 CNBD1Q8NA66 436 aa22.97■■□□□ 1.27
CDH3-205ENST00000566808 POLR3GLQ9BT43 218 aa22.97■■□□□ 1.27
CDH3-205ENST00000566808 PCDH10Q9P2E7 1040 aa22.97■■□□□ 1.27
CDH3-205ENST00000566808 SIPA1L3O60292 1781 aaPredicted RBP22.95■■□□□ 1.26
CDH3-205ENST00000566808 MAP2K1Q02750 393 aaPredicted RBP22.95■■□□□ 1.26
CDH3-205ENST00000566808 EAPPQ56P03 285 aaPredicted RBP22.95■■□□□ 1.26
CDH3-205ENST00000566808 CCDC24Q8N4L8 307 aa22.95■■□□□ 1.26
CDH3-205ENST00000566808 SRGNP10124 158 aa22.94■■□□□ 1.26
CDH3-205ENST00000566808 ST5P78524 1137 aa22.94■■□□□ 1.26
CDH3-205ENST00000566808 MORC1Q86VD1 984 aa22.94■■□□□ 1.26
CDH3-205ENST00000566808 HACL1Q9UJ83 578 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms