RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 DPEP1P16444 411 aa24.54■■□□□ 1.52
USB1-213ENST00000566292 ZNF496Q96IT1 587 aaPredicted RBP24.54■■□□□ 1.52
USB1-213ENST00000566292 ZPR1O75312 459 aa24.53■■□□□ 1.52
USB1-213ENST00000566292 U2AF1L5P0DN76 240 aaPredicted RBP24.53■■□□□ 1.52
USB1-213ENST00000566292 TM4SF1P30408 202 aa24.53■■□□□ 1.52
USB1-213ENST00000566292 C1QTNF8P60827 252 aa24.53■■□□□ 1.52
USB1-213ENST00000566292 U2AF1Q01081 240 aaKnown RBP eCLIP24.53■■□□□ 1.52
USB1-213ENST00000566292 ZNF790Q6PG37 636 aa24.53■■□□□ 1.52
USB1-213ENST00000566292 ARFGEF1Q9Y6D6 1849 aa24.53■■□□□ 1.52
USB1-213ENST00000566292 POLRMTO00411 1230 aaKnown RBP24.52■■□□□ 1.52
USB1-213ENST00000566292 NARFQ9UHQ1 456 aa24.52■■□□□ 1.52
USB1-213ENST00000566292 BCS1LQ9Y276 419 aa24.52■■□□□ 1.52
USB1-213ENST00000566292 HEG1Q9ULI3 1381 aa24.52■■□□□ 1.52
USB1-213ENST00000566292 GIGYF1O75420 1035 aaPredicted RBP24.51■■□□□ 1.51
USB1-213ENST00000566292 KCNA3P22001 575 aa24.51■■□□□ 1.51
USB1-213ENST00000566292 NRXN2Q9P2S2 1712 aa24.51■■□□□ 1.51
USB1-213ENST00000566292 CANXP27824 592 aaKnown RBP24.5■■□□□ 1.51
USB1-213ENST00000566292 BCL2L12Q9HB09 334 aa24.5■■□□□ 1.51
USB1-213ENST00000566292 FCHSD2O94868 740 aa24.49■■□□□ 1.51
USB1-213ENST00000566292 STARD3NLO95772 234 aa24.49■■□□□ 1.51
USB1-213ENST00000566292 KCNQ3O43525 872 aa24.48■■□□□ 1.51
USB1-213ENST00000566292 DLG5Q8TDM6 1919 aa24.48■■□□□ 1.51
USB1-213ENST00000566292 SCN7AQ01118 1682 aa24.47■■□□□ 1.51
USB1-213ENST00000566292 EIF5P55010 431 aaKnown RBP24.47■■□□□ 1.51
USB1-213ENST00000566292 NFIXQ14938 502 aa24.47■■□□□ 1.51
USB1-213ENST00000566292 BTBD11A6QL63 1104 aa24.46■■□□□ 1.51
USB1-213ENST00000566292 FMNL2Q96PY5 1086 aa24.46■■□□□ 1.51
USB1-213ENST00000566292 MCM10Q7L590 875 aa24.45■■□□□ 1.5
USB1-213ENST00000566292 TEX13AQ9BXU3 409 aaPredicted RBP24.45■■□□□ 1.5
USB1-213ENST00000566292 CHRNA5P30532 468 aa24.44■■□□□ 1.5
USB1-213ENST00000566292 ZNF526Q8TF50 670 aaPredicted RBP24.43■■□□□ 1.5
USB1-213ENST00000566292 GPBP1L1Q9HC44 474 aaPredicted RBP24.43■■□□□ 1.5
USB1-213ENST00000566292 PIM2Q9P1W9 311 aa24.43■■□□□ 1.5
USB1-213ENST00000566292 DLEC1Q9Y238 1755 aa24.43■■□□□ 1.5
USB1-213ENST00000566292 DCTN1Q14203 1278 aa24.42■■□□□ 1.5
USB1-213ENST00000566292 ARHGAP27Q6ZUM4 889 aa24.42■■□□□ 1.5
USB1-213ENST00000566292 RTF1Q92541 710 aaKnown RBP24.42■■□□□ 1.5
USB1-213ENST00000566292 A0A087WZG4 1122 aa24.41■■□□□ 1.5
USB1-213ENST00000566292 SENP3-EIF4A1A0A087X0R7 540 aa24.41■■□□□ 1.5
USB1-213ENST00000566292 A1BGP04217 495 aa24.41■■□□□ 1.5
USB1-213ENST00000566292 SERPINB2P05120 415 aa24.41■■□□□ 1.5
USB1-213ENST00000566292 BCORQ6W2J9 1755 aa24.41■■□□□ 1.5
USB1-213ENST00000566292 IL6STP40189 918 aaPredicted RBP24.4■■□□□ 1.5
USB1-213ENST00000566292 ANKRD31Q8N7Z5 1873 aa24.39■■□□□ 1.5
USB1-213ENST00000566292 PRAMEF22A3QJZ6 481 aa24.39■■□□□ 1.49
USB1-213ENST00000566292 HTATSF1O43719 755 aaKnown RBP24.39■■□□□ 1.49
USB1-213ENST00000566292 DALRD3Q5D0E6 543 aaKnown RBP24.39■■□□□ 1.49
USB1-213ENST00000566292 ZNF330Q9Y3S2 320 aaPredicted RBP24.39■■□□□ 1.49
USB1-213ENST00000566292 USP16Q9Y5T5 823 aa24.39■■□□□ 1.49
USB1-213ENST00000566292 BICDL1Q6ZP65 573 aa24.38■■□□□ 1.49
USB1-213ENST00000566292 TBC1D2BQ9UPU7 963 aa24.38■■□□□ 1.49
USB1-213ENST00000566292 SBF1O95248 1867 aa24.38■■□□□ 1.49
USB1-213ENST00000566292 CARMIL3Q8ND23 1372 aa24.38■■□□□ 1.49
USB1-213ENST00000566292 TBC1D9BQ66K14 1250 aa24.37■■□□□ 1.49
USB1-213ENST00000566292 PLEKHF1Q96S99 279 aa24.37■■□□□ 1.49
USB1-213ENST00000566292 KDM3BQ7LBC6 1761 aa24.36■■□□□ 1.49
USB1-213ENST00000566292 PIP4K2AP48426 406 aaPredicted RBP24.35■■□□□ 1.49
USB1-213ENST00000566292 LAMB4A4D0S4 1761 aa24.34■■□□□ 1.49
USB1-213ENST00000566292 CAMTA2O94983 1202 aa24.33■■□□□ 1.49
USB1-213ENST00000566292 SNRPA1P09661 255 aaKnown RBP24.33■■□□□ 1.49
USB1-213ENST00000566292 TAF7Q15545 349 aaPredicted RBP24.33■■□□□ 1.49
USB1-213ENST00000566292 COL11A2P13942 1736 aaPredicted RBP24.32■■□□□ 1.48
USB1-213ENST00000566292 MIS18AQ9NYP9 233 aa24.32■■□□□ 1.48
USB1-213ENST00000566292 KIF3CO14782 793 aa24.31■■□□□ 1.48
USB1-213ENST00000566292 NEFMP07197 916 aa24.31■■□□□ 1.48
USB1-213ENST00000566292 C9orf131Q5VYM1 1079 aa24.31■■□□□ 1.48
USB1-213ENST00000566292 DZIP3Q86Y13 1208 aaKnown RBP24.31■■□□□ 1.48
USB1-213ENST00000566292 C2CD5Q86YS7 1000 aa24.3■■□□□ 1.48
USB1-213ENST00000566292 NFE2L2Q16236 605 aa24.29■■□□□ 1.48
USB1-213ENST00000566292 PRR5LQ6MZQ0 368 aa24.29■■□□□ 1.48
USB1-213ENST00000566292 NPM2Q86SE8 214 aaKnown RBP24.29■■□□□ 1.48
USB1-213ENST00000566292 CCDC88AQ3V6T2 1871 aa24.29■■□□□ 1.48
USB1-213ENST00000566292 NBPF26B4DH59 902 aa24.28■■□□□ 1.48
USB1-213ENST00000566292 RALBP1Q15311 655 aa24.28■■□□□ 1.48
USB1-213ENST00000566292 NBPF10Q6P3W6 841 aaKnown RBP24.28■■□□□ 1.48
USB1-213ENST00000566292 CCDC24Q8N4L8 307 aa24.28■■□□□ 1.48
USB1-213ENST00000566292 NBPF15Q8N660 670 aa24.28■■□□□ 1.48
USB1-213ENST00000566292 H0YIN7 160 aa24.27■■□□□ 1.48
USB1-213ENST00000566292 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
USB1-213ENST00000566292 TTLL6Q8N841 843 aa24.27■■□□□ 1.48
USB1-213ENST00000566292 THUMPD2Q9BTF0 503 aaKnown RBP24.27■■□□□ 1.48
USB1-213ENST00000566292 CACNA1SQ13698 1873 aa24.26■■□□□ 1.47
USB1-213ENST00000566292 SETDB2Q96T68 719 aa24.26■■□□□ 1.47
USB1-213ENST00000566292 RNF181Q9P0P0 153 aa24.26■■□□□ 1.47
USB1-213ENST00000566292 RASSF7Q02833 373 aa24.25■■□□□ 1.47
USB1-213ENST00000566292 BRIP1Q9BX63 1249 aa24.25■■□□□ 1.47
USB1-213ENST00000566292 MAPK8IP3Q9UPT6 1336 aa24.25■■□□□ 1.47
USB1-213ENST00000566292 PNNQ9H307 717 aaKnown RBP24.24■■□□□ 1.47
USB1-213ENST00000566292 PDE6BP35913 854 aa24.23■■□□□ 1.47
USB1-213ENST00000566292 CLEC4GQ6UXB4 293 aa24.23■■□□□ 1.47
USB1-213ENST00000566292 CNBD1Q8NA66 436 aa24.23■■□□□ 1.47
USB1-213ENST00000566292 PNISRQ8TF01 805 aaKnown RBP24.23■■□□□ 1.47
USB1-213ENST00000566292 NMRK2Q9NPI5 230 aa24.23■■□□□ 1.47
USB1-213ENST00000566292 CEP350Q5VT06 3117 aa24.23■■□□□ 1.47
USB1-213ENST00000566292 ARFGEF2Q9Y6D5 1785 aa24.22■■□□□ 1.47
USB1-213ENST00000566292 PRELPP51888 382 aa24.22■■□□□ 1.47
USB1-213ENST00000566292 FER1L6Q2WGJ9 1857 aa24.21■■□□□ 1.47
USB1-213ENST00000566292 EIF4A1P60842 406 aaKnown RBP24.21■■□□□ 1.47
USB1-213ENST00000566292 ZNF622Q969S3 477 aaKnown RBP eCLIP24.21■■□□□ 1.47
USB1-213ENST00000566292 PDZRN3Q9UPQ7 1066 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms