RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ZNF790Q6PG37 636 aa19.93■□□□□ 0.78
CLN3-222ENST00000566083 IL17REQ8NFR9 667 aa19.93■□□□□ 0.78
CLN3-222ENST00000566083 POLRMTO00411 1230 aaKnown RBP19.93■□□□□ 0.78
CLN3-222ENST00000566083 PRKAR2BP31323 418 aa19.93■□□□□ 0.78
CLN3-222ENST00000566083 ZBTB1Q9Y2K1 713 aa19.93■□□□□ 0.78
CLN3-222ENST00000566083 PPP2R1AP30153 589 aa19.92■□□□□ 0.78
CLN3-222ENST00000566083 DDR1Q08345 913 aa19.92■□□□□ 0.78
CLN3-222ENST00000566083 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
CLN3-222ENST00000566083 FMNL2Q96PY5 1086 aa19.92■□□□□ 0.78
CLN3-222ENST00000566083 RSPH6AQ9H0K4 717 aa19.92■□□□□ 0.78
CLN3-222ENST00000566083 CEMIPQ8WUJ3 1361 aa19.91■□□□□ 0.78
CLN3-222ENST00000566083 U2AF1L5P0DN76 240 aaPredicted RBP19.91■□□□□ 0.78
CLN3-222ENST00000566083 U2AF1Q01081 240 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-222ENST00000566083 DALRD3Q5D0E6 543 aaKnown RBP19.91■□□□□ 0.78
CLN3-222ENST00000566083 ARHGAP27Q6ZUM4 889 aa19.91■□□□□ 0.78
CLN3-222ENST00000566083 RTF1Q92541 710 aaKnown RBP19.91■□□□□ 0.78
CLN3-222ENST00000566083 HEG1Q9ULI3 1381 aa19.9■□□□□ 0.78
CLN3-222ENST00000566083 ZNF496Q96IT1 587 aaPredicted RBP19.9■□□□□ 0.78
CLN3-222ENST00000566083 N4BP2Q86UW6 1770 aaPredicted RBP19.9■□□□□ 0.78
CLN3-222ENST00000566083 KIAA1551Q9HCM1 1747 aa19.89■□□□□ 0.78
CLN3-222ENST00000566083 UBR2Q8IWV8 1755 aa19.89■□□□□ 0.77
CLN3-222ENST00000566083 KCNA3P22001 575 aa19.89■□□□□ 0.77
CLN3-222ENST00000566083 CANXP27824 592 aaKnown RBP19.89■□□□□ 0.77
CLN3-222ENST00000566083 EIF5P55010 431 aaKnown RBP19.89■□□□□ 0.77
CLN3-222ENST00000566083 BTBD11A6QL63 1104 aa19.88■□□□□ 0.77
CLN3-222ENST00000566083 HTATSF1O43719 755 aaKnown RBP19.88■□□□□ 0.77
CLN3-222ENST00000566083 NEFMP07197 916 aa19.88■□□□□ 0.77
CLN3-222ENST00000566083 NFIXQ14938 502 aa19.88■□□□□ 0.77
CLN3-222ENST00000566083 PHACTR3Q96KR7 559 aa19.88■□□□□ 0.77
CLN3-222ENST00000566083 IL6STP40189 918 aaPredicted RBP19.87■□□□□ 0.77
CLN3-222ENST00000566083 ZNF526Q8TF50 670 aaPredicted RBP19.86■□□□□ 0.77
CLN3-222ENST00000566083 SERPINB2P05120 415 aa19.85■□□□□ 0.77
CLN3-222ENST00000566083 PDZRN3Q9UPQ7 1066 aa19.85■□□□□ 0.77
CLN3-222ENST00000566083 BRCA1P38398 1863 aaKnown RBP19.85■□□□□ 0.77
CLN3-222ENST00000566083 ARFGEF1Q9Y6D6 1849 aa19.84■□□□□ 0.77
CLN3-222ENST00000566083 BCL2L12Q9HB09 334 aa19.84■□□□□ 0.77
CLN3-222ENST00000566083 CHRNA5P30532 468 aa19.83■□□□□ 0.76
CLN3-222ENST00000566083 PNNQ9H307 717 aaKnown RBP19.83■□□□□ 0.76
CLN3-222ENST00000566083 SIPA1L3O60292 1781 aaPredicted RBP19.83■□□□□ 0.76
CLN3-222ENST00000566083 H0YIN7 160 aa19.81■□□□□ 0.76
CLN3-222ENST00000566083 SNRPA1P09661 255 aaKnown RBP19.81■□□□□ 0.76
CLN3-222ENST00000566083 ZNF330Q9Y3S2 320 aaPredicted RBP19.81■□□□□ 0.76
CLN3-222ENST00000566083 C9orf131Q5VYM1 1079 aa19.8■□□□□ 0.76
CLN3-222ENST00000566083 TTLL6Q8N841 843 aa19.8■□□□□ 0.76
CLN3-222ENST00000566083 NRXN2Q9P2S2 1712 aa19.79■□□□□ 0.76
CLN3-222ENST00000566083 KIF3CO14782 793 aa19.79■□□□□ 0.76
CLN3-222ENST00000566083 PDE6BP35913 854 aa19.79■□□□□ 0.76
CLN3-222ENST00000566083 BICDL1Q6ZP65 573 aa19.79■□□□□ 0.76
CLN3-222ENST00000566083 CARMIL3Q8ND23 1372 aa19.79■□□□□ 0.76
CLN3-222ENST00000566083 A1BGP04217 495 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 HSPA6P17066 643 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 TAF7Q15545 349 aaPredicted RBP19.78■□□□□ 0.76
CLN3-222ENST00000566083 MCM10Q7L590 875 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 PNISRQ8TF01 805 aaKnown RBP19.78■□□□□ 0.76
CLN3-222ENST00000566083 SETDB2Q96T68 719 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 BRIP1Q9BX63 1249 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 TBC1D2BQ9UPU7 963 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 AFDNP55196 1824 aaKnown RBP19.78■□□□□ 0.76
CLN3-222ENST00000566083 KDM2BQ8NHM5 1336 aa19.78■□□□□ 0.76
CLN3-222ENST00000566083 ZC3H4Q9UPT8 1303 aaKnown RBP19.78■□□□□ 0.76
CLN3-222ENST00000566083 RGL2O15211 777 aa19.77■□□□□ 0.76
CLN3-222ENST00000566083 TOMM70O94826 608 aa19.77■□□□□ 0.76
CLN3-222ENST00000566083 TBC1D9BQ66K14 1250 aa19.77■□□□□ 0.76
CLN3-222ENST00000566083 CLEC4GQ6UXB4 293 aa19.77■□□□□ 0.76
CLN3-222ENST00000566083 C2CD5Q86YS7 1000 aa19.77■□□□□ 0.76
CLN3-222ENST00000566083 KCNQ3O43525 872 aa19.76■□□□□ 0.75
CLN3-222ENST00000566083 RNF181Q9P0P0 153 aa19.76■□□□□ 0.75
CLN3-222ENST00000566083 ZNF652Q9Y2D9 606 aa19.76■□□□□ 0.75
CLN3-222ENST00000566083 USP16Q9Y5T5 823 aa19.76■□□□□ 0.75
CLN3-222ENST00000566083 NPHP1O15259 732 aa19.76■□□□□ 0.75
CLN3-222ENST00000566083 DZIP3Q86Y13 1208 aaKnown RBP19.76■□□□□ 0.75
CLN3-222ENST00000566083 CAMTA2O94983 1202 aa19.75■□□□□ 0.75
CLN3-222ENST00000566083 ST5P78524 1137 aa19.74■□□□□ 0.75
CLN3-222ENST00000566083 CNBD1Q8NA66 436 aa19.74■□□□□ 0.75
CLN3-222ENST00000566083 LMNB1P20700 586 aa19.73■□□□□ 0.75
CLN3-222ENST00000566083 RALBP1Q15311 655 aa19.73■□□□□ 0.75
CLN3-222ENST00000566083 PRR5LQ6MZQ0 368 aa19.73■□□□□ 0.75
CLN3-222ENST00000566083 C16orf71Q8IYS4 520 aaPredicted RBP19.73■□□□□ 0.75
CLN3-222ENST00000566083 SCN7AQ01118 1682 aa19.72■□□□□ 0.75
CLN3-222ENST00000566083 DCTN1Q14203 1278 aa19.72■□□□□ 0.75
CLN3-222ENST00000566083 MAPK8IP3Q9UPT6 1336 aa19.72■□□□□ 0.75
CLN3-222ENST00000566083 DLEC1Q9Y238 1755 aa19.71■□□□□ 0.75
CLN3-222ENST00000566083 NFE2L2Q16236 605 aa19.7■□□□□ 0.74
CLN3-222ENST00000566083 RBM46Q8TBY0 533 aaKnown RBP19.7■□□□□ 0.74
CLN3-222ENST00000566083 CNKSR1Q969H4 720 aa19.7■□□□□ 0.74
CLN3-222ENST00000566083 ZNF622Q969S3 477 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-222ENST00000566083 PLEKHF1Q96S99 279 aa19.7■□□□□ 0.74
CLN3-222ENST00000566083 NMRK2Q9NPI5 230 aa19.7■□□□□ 0.74
CLN3-222ENST00000566083 APLP1P51693 650 aa19.69■□□□□ 0.74
CLN3-222ENST00000566083 SOGA3Q5TF21 947 aa19.69■□□□□ 0.74
CLN3-222ENST00000566083 SBF1O95248 1867 aa19.69■□□□□ 0.74
CLN3-222ENST00000566083 STYK1Q6J9G0 422 aa19.68■□□□□ 0.74
CLN3-222ENST00000566083 TPTE2Q6XPS3 522 aa19.68■□□□□ 0.74
CLN3-222ENST00000566083 NBPF5PQ86XG9 351 aaPredicted RBP19.68■□□□□ 0.74
CLN3-222ENST00000566083 PRAMEF22A3QJZ6 481 aa19.68■□□□□ 0.74
CLN3-222ENST00000566083 CEP350Q5VT06 3117 aa19.67■□□□□ 0.74
CLN3-222ENST00000566083 FSTL1Q12841 308 aa19.67■□□□□ 0.74
CLN3-222ENST00000566083 MASTLQ96GX5 879 aa19.67■□□□□ 0.74
CLN3-222ENST00000566083 NBPF26B4DH59 902 aa19.66■□□□□ 0.74
CLN3-222ENST00000566083 SRGNP10124 158 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms