RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 FKBP8Q14318 412 aa24.4■■□□□ 1.5
CLN3-221ENST00000566057 FMNL2Q96PY5 1086 aa24.4■■□□□ 1.5
CLN3-221ENST00000566057 STARD3NLO95772 234 aa24.39■■□□□ 1.49
CLN3-221ENST00000566057 NEFMP07197 916 aa24.39■■□□□ 1.49
CLN3-221ENST00000566057 CANXP27824 592 aaKnown RBP24.38■■□□□ 1.49
CLN3-221ENST00000566057 NFE2L2Q16236 605 aa24.38■■□□□ 1.49
CLN3-221ENST00000566057 N4BP2Q86UW6 1770 aaPredicted RBP24.38■■□□□ 1.49
CLN3-221ENST00000566057 COL15A1P39059 1388 aa24.38■■□□□ 1.49
CLN3-221ENST00000566057 USPL1Q5W0Q7 1092 aa24.37■■□□□ 1.49
CLN3-221ENST00000566057 TEX13AQ9BXU3 409 aaPredicted RBP24.37■■□□□ 1.49
CLN3-221ENST00000566057 KIAA1551Q9HCM1 1747 aa24.37■■□□□ 1.49
CLN3-221ENST00000566057 ZPR1O75312 459 aa24.36■■□□□ 1.49
CLN3-221ENST00000566057 PNNQ9H307 717 aaKnown RBP24.36■■□□□ 1.49
CLN3-221ENST00000566057 PRKRIP1Q9H875 184 aaPredicted RBP24.36■■□□□ 1.49
CLN3-221ENST00000566057 PARP3Q9Y6F1 533 aa24.36■■□□□ 1.49
CLN3-221ENST00000566057 TAF7Q15545 349 aaPredicted RBP24.35■■□□□ 1.49
CLN3-221ENST00000566057 MIS18AQ9NYP9 233 aa24.35■■□□□ 1.49
CLN3-221ENST00000566057 NARFQ9UHQ1 456 aa24.35■■□□□ 1.49
CLN3-221ENST00000566057 MAPK8IP3Q9UPT6 1336 aa24.35■■□□□ 1.49
CLN3-221ENST00000566057 PRAMEF22A3QJZ6 481 aa24.34■■□□□ 1.49
CLN3-221ENST00000566057 A1BGP04217 495 aa24.34■■□□□ 1.49
CLN3-221ENST00000566057 TM4SF1P30408 202 aa24.34■■□□□ 1.49
CLN3-221ENST00000566057 EIF5P55010 431 aaKnown RBP24.34■■□□□ 1.49
CLN3-221ENST00000566057 DDR1Q08345 913 aa24.34■■□□□ 1.49
CLN3-221ENST00000566057 THUMPD2Q9BTF0 503 aaKnown RBP24.33■■□□□ 1.49
CLN3-221ENST00000566057 BCL2L12Q9HB09 334 aa24.33■■□□□ 1.49
CLN3-221ENST00000566057 WWC3Q9ULE0 1092 aa24.33■■□□□ 1.49
CLN3-221ENST00000566057 USP16Q9Y5T5 823 aa24.33■■□□□ 1.49
CLN3-221ENST00000566057 KDM3BQ7LBC6 1761 aa24.33■■□□□ 1.49
CLN3-221ENST00000566057 C10orf71Q711Q0 1435 aa24.33■■□□□ 1.49
CLN3-221ENST00000566057 AFDNP55196 1824 aaKnown RBP24.33■■□□□ 1.48
CLN3-221ENST00000566057 PXDNLA1KZ92 1463 aa24.31■■□□□ 1.48
CLN3-221ENST00000566057 GRIN3BO60391 1043 aa24.3■■□□□ 1.48
CLN3-221ENST00000566057 A0A0G2JLW4 131 aa24.29■■□□□ 1.48
CLN3-221ENST00000566057 POLRMTO00411 1230 aaKnown RBP24.29■■□□□ 1.48
CLN3-221ENST00000566057 SNRPA1P09661 255 aaKnown RBP24.29■■□□□ 1.48
CLN3-221ENST00000566057 BRCA1P38398 1863 aaKnown RBP24.29■■□□□ 1.48
CLN3-221ENST00000566057 A0A087WZG4 1122 aa24.28■■□□□ 1.48
CLN3-221ENST00000566057 IL6STP40189 918 aaPredicted RBP24.28■■□□□ 1.48
CLN3-221ENST00000566057 PIP4K2AP48426 406 aaPredicted RBP24.28■■□□□ 1.48
CLN3-221ENST00000566057 TGFB2P61812 414 aa24.28■■□□□ 1.48
CLN3-221ENST00000566057 NFIXQ14938 502 aa24.28■■□□□ 1.48
CLN3-221ENST00000566057 CCDC146Q8IYE0 955 aa24.28■■□□□ 1.48
CLN3-221ENST00000566057 ZNF330Q9Y3S2 320 aaPredicted RBP24.28■■□□□ 1.48
CLN3-221ENST00000566057 TMPOP42166 694 aaKnown RBP24.27■■□□□ 1.48
CLN3-221ENST00000566057 RIPK4P57078 832 aa24.27■■□□□ 1.48
CLN3-221ENST00000566057 TBC1D2BQ9UPU7 963 aa24.27■■□□□ 1.48
CLN3-221ENST00000566057 NRXN2Q9P2S2 1712 aa24.27■■□□□ 1.48
CLN3-221ENST00000566057 DPEP1P16444 411 aa24.26■■□□□ 1.47
CLN3-221ENST00000566057 ADAMTS8Q9UP79 889 aa24.26■■□□□ 1.47
CLN3-221ENST00000566057 SCN7AQ01118 1682 aa24.26■■□□□ 1.47
CLN3-221ENST00000566057 WDR43Q15061 677 aaKnown RBP eCLIP24.25■■□□□ 1.47
CLN3-221ENST00000566057 PNISRQ8TF01 805 aaKnown RBP24.25■■□□□ 1.47
CLN3-221ENST00000566057 LAMB4A4D0S4 1761 aa24.24■■□□□ 1.47
CLN3-221ENST00000566057 ZNF784Q8NCA9 323 aaPredicted RBP24.24■■□□□ 1.47
CLN3-221ENST00000566057 RRP7AQ9Y3A4 280 aaKnown RBP24.24■■□□□ 1.47
CLN3-221ENST00000566057 NBPF26B4DH59 902 aa24.23■■□□□ 1.47
CLN3-221ENST00000566057 KCNA3P22001 575 aa24.23■■□□□ 1.47
CLN3-221ENST00000566057 NBPF10Q6P3W6 841 aaKnown RBP24.23■■□□□ 1.47
CLN3-221ENST00000566057 NBPF15Q8N660 670 aa24.23■■□□□ 1.47
CLN3-221ENST00000566057 BCORQ6W2J9 1755 aa24.23■■□□□ 1.47
CLN3-221ENST00000566057 ZNF316A6NFI3 1004 aaPredicted RBP24.22■■□□□ 1.47
CLN3-221ENST00000566057 EIF4A1P60842 406 aaKnown RBP24.22■■□□□ 1.47
CLN3-221ENST00000566057 BICDL1Q6ZP65 573 aa24.22■■□□□ 1.47
CLN3-221ENST00000566057 RUNDC1Q96C34 613 aa24.22■■□□□ 1.47
CLN3-221ENST00000566057 SERPINB2P05120 415 aa24.21■■□□□ 1.47
CLN3-221ENST00000566057 NEUROD2Q15784 382 aa24.21■■□□□ 1.47
CLN3-221ENST00000566057 TBC1D9BQ66K14 1250 aa24.21■■□□□ 1.47
CLN3-221ENST00000566057 GIGYF1O75420 1035 aaPredicted RBP24.2■■□□□ 1.46
CLN3-221ENST00000566057 CAMTA2O94983 1202 aa24.2■■□□□ 1.46
CLN3-221ENST00000566057 NPM2Q86SE8 214 aaKnown RBP24.19■■□□□ 1.46
CLN3-221ENST00000566057 DZIP3Q86Y13 1208 aaKnown RBP24.19■■□□□ 1.46
CLN3-221ENST00000566057 BCS1LQ9Y276 419 aa24.19■■□□□ 1.46
CLN3-221ENST00000566057 ARFGEF1Q9Y6D6 1849 aa24.19■■□□□ 1.46
CLN3-221ENST00000566057 CHRNA5P30532 468 aa24.18■■□□□ 1.46
CLN3-221ENST00000566057 TSPYL4Q9UJ04 414 aa24.17■■□□□ 1.46
CLN3-221ENST00000566057 TRIM35Q9UPQ4 493 aa24.17■■□□□ 1.46
CLN3-221ENST00000566057 ANKRD31Q8N7Z5 1873 aa24.17■■□□□ 1.46
CLN3-221ENST00000566057 LMOD3Q0VAK6 560 aa24.16■■□□□ 1.46
CLN3-221ENST00000566057 CCDC184Q52MB2 194 aa24.16■■□□□ 1.46
CLN3-221ENST00000566057 PIM2Q9P1W9 311 aa24.15■■□□□ 1.46
CLN3-221ENST00000566057 CARMIL3Q8ND23 1372 aa24.15■■□□□ 1.46
CLN3-221ENST00000566057 DLEC1Q9Y238 1755 aa24.14■■□□□ 1.46
CLN3-221ENST00000566057 SETDB2Q96T68 719 aa24.12■■□□□ 1.45
CLN3-221ENST00000566057 BABAM1Q9NWV8 329 aa24.12■■□□□ 1.45
CLN3-221ENST00000566057 NUP98P52948 1817 aa24.12■■□□□ 1.45
CLN3-221ENST00000566057 DALRD3Q5D0E6 543 aaKnown RBP24.11■■□□□ 1.45
CLN3-221ENST00000566057 PRR5LQ6MZQ0 368 aa24.11■■□□□ 1.45
CLN3-221ENST00000566057 CLEC4GQ6UXB4 293 aa24.11■■□□□ 1.45
CLN3-221ENST00000566057 CCDC24Q8N4L8 307 aa24.11■■□□□ 1.45
CLN3-221ENST00000566057 NGEFQ8N5V2 710 aa24.1■■□□□ 1.45
CLN3-221ENST00000566057 CHL1O00533 1208 aa24.09■■□□□ 1.45
CLN3-221ENST00000566057 ARHGAP27Q6ZUM4 889 aa24.09■■□□□ 1.45
CLN3-221ENST00000566057 APAF1O14727 1248 aa24.08■■□□□ 1.45
CLN3-221ENST00000566057 MYL6BP14649 208 aa24.08■■□□□ 1.45
CLN3-221ENST00000566057 HLFQ16534 295 aa24.08■■□□□ 1.45
CLN3-221ENST00000566057 C2CD5Q86YS7 1000 aa24.08■■□□□ 1.45
CLN3-221ENST00000566057 LAS1LQ9Y4W2 734 aaKnown RBP24.08■■□□□ 1.45
CLN3-221ENST00000566057 COL11A2P13942 1736 aaPredicted RBP24.07■■□□□ 1.44
CLN3-221ENST00000566057 ZNF652Q9Y2D9 606 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms