RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 NARFQ9UHQ1 456 aa11.59□□□□□ -0.55
CAPN3-213ENST00000565173 U2SURPO15042 1029 aaKnown RBP11.58□□□□□ -0.56
CAPN3-213ENST00000565173 CHRNA5P30532 468 aa11.58□□□□□ -0.56
CAPN3-213ENST00000565173 CNGB1Q14028 1251 aaPredicted RBP11.58□□□□□ -0.56
CAPN3-213ENST00000565173 NFIXQ14938 502 aa11.58□□□□□ -0.56
CAPN3-213ENST00000565173 UBR2Q8IWV8 1755 aa11.58□□□□□ -0.56
CAPN3-213ENST00000565173 COL15A1P39059 1388 aa11.57□□□□□ -0.56
CAPN3-213ENST00000565173 GNAT3A8MTJ3 354 aa11.57□□□□□ -0.56
CAPN3-213ENST00000565173 EIF5P55010 431 aaKnown RBP11.57□□□□□ -0.56
CAPN3-213ENST00000565173 DALRD3Q5D0E6 543 aaKnown RBP11.57□□□□□ -0.56
CAPN3-213ENST00000565173 ZNF496Q96IT1 587 aaPredicted RBP11.57□□□□□ -0.56
CAPN3-213ENST00000565173 PHACTR3Q96KR7 559 aa11.57□□□□□ -0.56
CAPN3-213ENST00000565173 ARFGEF1Q9Y6D6 1849 aa11.57□□□□□ -0.56
CAPN3-213ENST00000565173 HSPA6P17066 643 aa11.56□□□□□ -0.56
CAPN3-213ENST00000565173 CANXP27824 592 aaKnown RBP11.56□□□□□ -0.56
CAPN3-213ENST00000565173 ZNF790Q6PG37 636 aa11.56□□□□□ -0.56
CAPN3-213ENST00000565173 GAS2L2Q8NHY3 880 aa11.56□□□□□ -0.56
CAPN3-213ENST00000565173 RSPH6AQ9H0K4 717 aa11.56□□□□□ -0.56
CAPN3-213ENST00000565173 CEMIPQ8WUJ3 1361 aa11.55□□□□□ -0.56
CAPN3-213ENST00000565173 NRXN2Q9P2S2 1712 aa11.55□□□□□ -0.56
CAPN3-213ENST00000565173 SIPA1L3O60292 1781 aaPredicted RBP11.55□□□□□ -0.56
CAPN3-213ENST00000565173 STARD3NLO95772 234 aa11.55□□□□□ -0.56
CAPN3-213ENST00000565173 C9orf131Q5VYM1 1079 aa11.55□□□□□ -0.56
CAPN3-213ENST00000565173 TTC5Q8N0Z6 440 aa11.55□□□□□ -0.56
CAPN3-213ENST00000565173 AFDNP55196 1824 aaKnown RBP11.55□□□□□ -0.56
CAPN3-213ENST00000565173 HEG1Q9ULI3 1381 aa11.54□□□□□ -0.56
CAPN3-213ENST00000565173 KCNQ3O43525 872 aa11.54□□□□□ -0.56
CAPN3-213ENST00000565173 SERPINB2P05120 415 aa11.54□□□□□ -0.56
CAPN3-213ENST00000565173 TEFQ10587 303 aa11.54□□□□□ -0.56
CAPN3-213ENST00000565173 NMRK2Q9NPI5 230 aa11.54□□□□□ -0.56
CAPN3-213ENST00000565173 TOMM70O94826 608 aa11.53□□□□□ -0.56
CAPN3-213ENST00000565173 PPP2R1AP30153 589 aa11.53□□□□□ -0.56
CAPN3-213ENST00000565173 PRKAR2BP31323 418 aa11.53□□□□□ -0.56
CAPN3-213ENST00000565173 TEX13AQ9BXU3 409 aaPredicted RBP11.53□□□□□ -0.56
CAPN3-213ENST00000565173 A1BGP04217 495 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 PRELPP51888 382 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 TBC1D9BQ66K14 1250 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 FMNL2Q96PY5 1086 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 PCNTO95613 3336 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 CARMIL3Q8ND23 1372 aa11.52□□□□□ -0.57
CAPN3-213ENST00000565173 A0A087WZG4 1122 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 BTBD11A6QL63 1104 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 IL6STP40189 918 aaPredicted RBP11.51□□□□□ -0.57
CAPN3-213ENST00000565173 CFAP53Q96M91 514 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 RNF181Q9P0P0 153 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 TBC1D2BQ9UPU7 963 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 USP16Q9Y5T5 823 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 SBF1O95248 1867 aa11.51□□□□□ -0.57
CAPN3-213ENST00000565173 RASSF7Q02833 373 aa11.5□□□□□ -0.57
CAPN3-213ENST00000565173 BICDL1Q6ZP65 573 aa11.5□□□□□ -0.57
CAPN3-213ENST00000565173 C2CD5Q86YS7 1000 aa11.5□□□□□ -0.57
CAPN3-213ENST00000565173 DNAJC5GQ8N7S2 189 aa11.5□□□□□ -0.57
CAPN3-213ENST00000565173 PRAMEF22A3QJZ6 481 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 H0YIN7 160 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 CAMTA2O94983 1202 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 U2AF1L5P0DN76 240 aaPredicted RBP11.49□□□□□ -0.57
CAPN3-213ENST00000565173 U2AF1Q01081 240 aaKnown RBP eCLIP11.49□□□□□ -0.57
CAPN3-213ENST00000565173 MCM10Q7L590 875 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 TTLL6Q8N841 843 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 NUDCQ9Y266 331 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 DLEC1Q9Y238 1755 aa11.49□□□□□ -0.57
CAPN3-213ENST00000565173 DCTN1Q14203 1278 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 PRR5LQ6MZQ0 368 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 CCDC24Q8N4L8 307 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 RBM46Q8TBY0 533 aaKnown RBP11.48□□□□□ -0.57
CAPN3-213ENST00000565173 BRIP1Q9BX63 1249 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 RRAGCQ9HB90 399 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 ZNF330Q9Y3S2 320 aaPredicted RBP11.48□□□□□ -0.57
CAPN3-213ENST00000565173 SCN7AQ01118 1682 aa11.48□□□□□ -0.57
CAPN3-213ENST00000565173 ANKRD31Q8N7Z5 1873 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 KDM2BQ8NHM5 1336 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 NFKBIEO00221 500 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 HTATSF1O43719 755 aaKnown RBP11.47□□□□□ -0.57
CAPN3-213ENST00000565173 LMNB1P20700 586 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 PIP4K2AP48426 406 aaPredicted RBP11.47□□□□□ -0.57
CAPN3-213ENST00000565173 APLP1P51693 650 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 SETDB2Q96T68 719 aa11.47□□□□□ -0.57
CAPN3-213ENST00000565173 ZC3H4Q9UPT8 1303 aaKnown RBP11.46□□□□□ -0.57
CAPN3-213ENST00000565173 SNRPA1P09661 255 aaKnown RBP11.46□□□□□ -0.57
CAPN3-213ENST00000565173 PDE6BP35913 854 aa11.46□□□□□ -0.57
CAPN3-213ENST00000565173 DZIP3Q86Y13 1208 aaKnown RBP11.46□□□□□ -0.57
CAPN3-213ENST00000565173 RTF1Q92541 710 aaKnown RBP11.46□□□□□ -0.57
CAPN3-213ENST00000565173 PDZRN3Q9UPQ7 1066 aa11.46□□□□□ -0.57
CAPN3-213ENST00000565173 GLTPD2A6NH11 291 aa11.45□□□□□ -0.58
CAPN3-213ENST00000565173 NBPF26B4DH59 902 aa11.45□□□□□ -0.58
CAPN3-213ENST00000565173 FSTL1Q12841 308 aa11.45□□□□□ -0.58
CAPN3-213ENST00000565173 TAF7Q15545 349 aaPredicted RBP11.45□□□□□ -0.58
CAPN3-213ENST00000565173 NBPF10Q6P3W6 841 aaKnown RBP11.45□□□□□ -0.58
CAPN3-213ENST00000565173 NBPF15Q8N660 670 aa11.45□□□□□ -0.58
CAPN3-213ENST00000565173 IFFO2Q5TF58 517 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 CLEC4GQ6UXB4 293 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 C16orf71Q8IYS4 520 aaPredicted RBP11.44□□□□□ -0.58
CAPN3-213ENST00000565173 CNBD1Q8NA66 436 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 ZNF622Q969S3 477 aaKnown RBP eCLIP11.44□□□□□ -0.58
CAPN3-213ENST00000565173 PLEKHF1Q96S99 279 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 MIS18AQ9NYP9 233 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 BCORQ6W2J9 1755 aa11.44□□□□□ -0.58
CAPN3-213ENST00000565173 COL11A2P13942 1736 aaPredicted RBP11.43□□□□□ -0.58
CAPN3-213ENST00000565173 KLRG2A4D1S0 409 aaPredicted RBP11.43□□□□□ -0.58
CAPN3-213ENST00000565173 POTECB2RU33 542 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms