RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 PCDHGC4Q9Y5F7 938 aa9.48□□□□□ -0.89
CHD9-212ENST00000564641 GSK3AP49840 483 aa9.47□□□□□ -0.89
CHD9-212ENST00000564641 ARSJQ5FYB0 599 aaPredicted RBP9.47□□□□□ -0.89
CHD9-212ENST00000564641 FNBP4Q8N3X1 1017 aaPredicted RBP9.47□□□□□ -0.89
CHD9-212ENST00000564641 NEDD1Q8NHV4 660 aa9.47□□□□□ -0.89
CHD9-212ENST00000564641 UCN2Q96RP3 112 aa9.47□□□□□ -0.89
CHD9-212ENST00000564641 PHF20L1A8MW92 1017 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 OIP5O43482 229 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 FGFR3P22607 806 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 PODNQ7Z5L7 613 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 LARGE2Q8N3Y3 721 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 BEND7Q8N7W2 519 aaPredicted RBP9.46□□□□□ -0.9
CHD9-212ENST00000564641 GOLGA6L1Q8N7Z2 621 aa9.46□□□□□ -0.9
CHD9-212ENST00000564641 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.46□□□□□ -0.9
CHD9-212ENST00000564641 A0A1W2PNR3 127 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 PALM3A6NDB9 673 aaPredicted RBP9.45□□□□□ -0.9
CHD9-212ENST00000564641 A6NJR5 290 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 BNIP3LO60238 219 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 BMP4P12644 408 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 TEAD4Q15561 434 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 CLUAP1Q96AJ1 413 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 KLRG1Q96E93 195 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 ABHD17AQ96GS6 310 aa9.45□□□□□ -0.9
CHD9-212ENST00000564641 ZCCHC2Q9C0B9 1178 aaKnown RBP9.45□□□□□ -0.9
CHD9-212ENST00000564641 RBM19Q9Y4C8 960 aaKnown RBP9.45□□□□□ -0.9
CHD9-212ENST00000564641 GPC6Q9Y625 555 aaPredicted RBP9.45□□□□□ -0.9
CHD9-212ENST00000564641 M0R2N6 131 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 ATXN7O15265 892 aaPredicted RBP9.44□□□□□ -0.9
CHD9-212ENST00000564641 FOXK2Q01167 660 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 CCDC102BQ68D86 513 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 TPCN2Q8NHX9 752 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 GLMNQ92990 594 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 DNAAF2Q9NVR5 837 aaKnown RBP9.44□□□□□ -0.9
CHD9-212ENST00000564641 GJA3Q9Y6H8 435 aa9.44□□□□□ -0.9
CHD9-212ENST00000564641 IRS1P35568 1242 aa9.43□□□□□ -0.9
CHD9-212ENST00000564641 EPHA4P54764 986 aa9.43□□□□□ -0.9
CHD9-212ENST00000564641 OGFOD1Q8N543 542 aa9.43□□□□□ -0.9
CHD9-212ENST00000564641 MKRN1Q9UHC7 482 aaKnown RBP9.43□□□□□ -0.9
CHD9-212ENST00000564641 CHMP3Q9Y3E7 222 aa9.43□□□□□ -0.9
CHD9-212ENST00000564641 ZBTB7BO15156 539 aaPredicted RBP9.42□□□□□ -0.9
CHD9-212ENST00000564641 NOS2P35228 1153 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 CLDN10P78369 228 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 FAM182BQ5T319 152 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 SAMD5Q5TGI4 173 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 BICDL1Q6ZP65 573 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 L3MBTL2Q969R5 705 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 USP3Q9Y6I4 520 aa9.42□□□□□ -0.9
CHD9-212ENST00000564641 DNMT3AQ9Y6K1 912 aaPredicted RBP9.42□□□□□ -0.9
CHD9-212ENST00000564641 SLC9A9Q8IVB4 645 aa9.41□□□□□ -0.9
CHD9-212ENST00000564641 SIX5Q8N196 739 aa9.41□□□□□ -0.9
CHD9-212ENST00000564641 GALNT6Q8NCL4 622 aa9.41□□□□□ -0.9
CHD9-212ENST00000564641 ZIC5Q96T25 663 aa9.41□□□□□ -0.9
CHD9-212ENST00000564641 SERTM1A2A2V5 107 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 FAM157BP0CG42 384 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 ARAFP10398 606 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 LAMC2Q13753 1193 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 SLCO4C1Q6ZQN7 724 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 TNS4Q8IZW8 715 aa9.4□□□□□ -0.9
CHD9-212ENST00000564641 AVENQ9NQS1 362 aaPredicted RBP9.4□□□□□ -0.9
CHD9-212ENST00000564641 MAPTP10636 758 aaKnown RBP9.39□□□□□ -0.91
CHD9-212ENST00000564641 PSMA6P60900 246 aaKnown RBP9.39□□□□□ -0.91
CHD9-212ENST00000564641 CTBSQ01459 385 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 TNP2Q05952 138 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 EDARADDQ8WWZ3 215 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 CALR3Q96L12 384 aaKnown RBP9.39□□□□□ -0.91
CHD9-212ENST00000564641 NEUROD4Q9HD90 331 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 TFIP11Q9UBB9 837 aaKnown RBP9.39□□□□□ -0.91
CHD9-212ENST00000564641 ZNF232Q9UNY5 417 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 KIAA1024Q9UPX6 916 aa9.39□□□□□ -0.91
CHD9-212ENST00000564641 PIK3R2O00459 728 aa9.38□□□□□ -0.91
CHD9-212ENST00000564641 C2CD2LO14523 706 aa9.38□□□□□ -0.91
CHD9-212ENST00000564641 HIRAP54198 1017 aaPredicted RBP9.38□□□□□ -0.91
CHD9-212ENST00000564641 KCTD17Q8N5Z5 321 aa9.38□□□□□ -0.91
CHD9-212ENST00000564641 ZDHHC1Q8WTX9 485 aa9.38□□□□□ -0.91
CHD9-212ENST00000564641 MAFBQ9Y5Q3 323 aaPredicted RBP9.38□□□□□ -0.91
CHD9-212ENST00000564641 PARP3Q9Y6F1 533 aa9.38□□□□□ -0.91
CHD9-212ENST00000564641 EML1O00423 815 aa9.37□□□□□ -0.91
CHD9-212ENST00000564641 KHNYNO15037 678 aaKnown RBP9.37□□□□□ -0.91
CHD9-212ENST00000564641 IGHA1P01876 353 aa9.37□□□□□ -0.91
CHD9-212ENST00000564641 C1orf53Q5VUE5 145 aa9.37□□□□□ -0.91
CHD9-212ENST00000564641 GGA1Q9UJY5 639 aa9.37□□□□□ -0.91
CHD9-212ENST00000564641 CNTNAP5Q8WYK1 1306 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 DCDC2BA2VCK2 349 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 RASA1P20936 1047 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 ADH6P28332 368 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 TXLNAP40222 546 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 LARP1Q6PKG0 1096 aaKnown RBP9.36□□□□□ -0.91
CHD9-212ENST00000564641 ALYREFQ86V81 257 aaKnown RBP9.36□□□□□ -0.91
CHD9-212ENST00000564641 GAS2L2Q8NHY3 880 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 PPP1R12CQ9BZL4 782 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 MKL2Q9ULH7 1088 aa9.36□□□□□ -0.91
CHD9-212ENST00000564641 POTEAQ6S8J7 498 aa9.35□□□□□ -0.91
CHD9-212ENST00000564641 ZNF594Q96JF6 807 aaPredicted RBP9.35□□□□□ -0.91
CHD9-212ENST00000564641 TSPAN10Q9H1Z9 355 aaPredicted RBP9.35□□□□□ -0.91
CHD9-212ENST00000564641 ANKIB1Q9P2G1 1089 aa9.35□□□□□ -0.91
CHD9-212ENST00000564641 SHISA8B8ZZ34 492 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 EFSO43281 561 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 EPXP11678 715 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 AMPD1P23109 780 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 SEC13P55735 322 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms