RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CHMP7Q8WUX9 453 aaPredicted RBP8.23□□□□□ -1.09
LINC00560-201ENST00000564593 NLRP3Q96P20 1036 aa8.23□□□□□ -1.09
LINC00560-201ENST00000564593 SCHIP1Q9P0W5 487 aaPredicted RBP8.23□□□□□ -1.09
LINC00560-201ENST00000564593 MEN1O00255 615 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 MFAP1P55081 439 aaKnown RBP8.22□□□□□ -1.09
LINC00560-201ENST00000564593 MTFR1Q15390 333 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 TBCELQ5QJ74 424 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 SLC9A9Q8IVB4 645 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 TMEM151AQ8N4L1 468 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 ZNF395Q9H8N7 513 aaPredicted RBP8.22□□□□□ -1.09
LINC00560-201ENST00000564593 FOXO3O43524 673 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 C21orf2O43822 256 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 PTCD1O75127 700 aaKnown RBP8.22□□□□□ -1.09
LINC00560-201ENST00000564593 ABL1P00519 1130 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 FOXK2Q01167 660 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 SEPT3Q9UH03 358 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 HRH3Q9Y5N1 445 aa8.22□□□□□ -1.09
LINC00560-201ENST00000564593 PPP1R12BO60237 982 aaPredicted RBP8.21□□□□□ -1.1
LINC00560-201ENST00000564593 CENPCQ03188 943 aa8.21□□□□□ -1.1
LINC00560-201ENST00000564593 CAPN12Q6ZSI9 719 aa8.21□□□□□ -1.1
LINC00560-201ENST00000564593 VTI1AQ96AJ9 217 aa8.21□□□□□ -1.1
LINC00560-201ENST00000564593 SOWAHDA6NJG2 315 aa8.2□□□□□ -1.1
LINC00560-201ENST00000564593 CDK2AP1O14519 115 aa8.2□□□□□ -1.1
LINC00560-201ENST00000564593 CCDC27Q2M243 656 aa8.2□□□□□ -1.1
LINC00560-201ENST00000564593 MEIOBQ8N635 442 aa8.2□□□□□ -1.1
LINC00560-201ENST00000564593 GDF11O95390 407 aa8.19□□□□□ -1.1
LINC00560-201ENST00000564593 RASSF7Q02833 373 aa8.19□□□□□ -1.1
LINC00560-201ENST00000564593 NAA30Q147X3 362 aaPredicted RBP8.19□□□□□ -1.1
LINC00560-201ENST00000564593 GTF3C2Q8WUA4 911 aaPredicted RBP8.19□□□□□ -1.1
LINC00560-201ENST00000564593 COL26A1Q96A83 441 aa8.19□□□□□ -1.1
LINC00560-201ENST00000564593 PPFIA3O75145 1194 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 PSMA6P60900 246 aaKnown RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 NBPF15Q8N660 670 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 TSEN34Q9BSV6 310 aaKnown RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 FHDC1Q9C0D6 1143 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 ANO2Q9NQ90 1003 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 EGFL7Q9UHF1 273 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 CHMP3Q9Y3E7 222 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 USP3Q9Y6I4 520 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 RNF225M0QZC1 329 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 MAN1A2O60476 641 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 GTF2E1P29083 439 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 ZNF211Q13398 564 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 STAG2Q8N3U4 1231 aa8.18□□□□□ -1.1
LINC00560-201ENST00000564593 ZSCAN10Q96SZ4 725 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 C2orf49Q9BVC5 232 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 IQSEC3Q9UPP2 1182 aaPredicted RBP8.18□□□□□ -1.1
LINC00560-201ENST00000564593 UPP2O95045 317 aa8.17□□□□□ -1.1
LINC00560-201ENST00000564593 TMEM214Q6NUQ4 689 aaKnown RBP8.17□□□□□ -1.1
LINC00560-201ENST00000564593 CABP1Q9NZU7 370 aa8.17□□□□□ -1.1
LINC00560-201ENST00000564593 BIN2Q9UBW5 565 aaPredicted RBP8.17□□□□□ -1.1
LINC00560-201ENST00000564593 DNMT3AQ9Y6K1 912 aaPredicted RBP8.17□□□□□ -1.1
LINC00560-201ENST00000564593 ICMTO60725 284 aa8.16□□□□□ -1.1
LINC00560-201ENST00000564593 SLC27A3Q5K4L6 730 aa8.16□□□□□ -1.1
LINC00560-201ENST00000564593 PPARGC1BQ86YN6 1023 aaKnown RBP8.16□□□□□ -1.1
LINC00560-201ENST00000564593 INSM2Q96T92 566 aaPredicted RBP8.16□□□□□ -1.1
LINC00560-201ENST00000564593 SERTM1A2A2V5 107 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 H3BRB1 525 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 GLYCTKQ8IVS8 523 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 LINC00528Q8N1L1 170 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 RGS22Q8NE09 1264 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 TUT1Q9H6E5 874 aaKnown RBP8.15□□□□□ -1.1
LINC00560-201ENST00000564593 ZNF232Q9UNY5 417 aa8.15□□□□□ -1.1
LINC00560-201ENST00000564593 SPINT1O43278 529 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 GPC1P35052 558 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 NOS2P35228 1153 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 FKBP4Q02790 459 aaKnown RBP eCLIP8.14□□□□□ -1.11
LINC00560-201ENST00000564593 SF3B2Q13435 895 aaKnown RBP8.14□□□□□ -1.11
LINC00560-201ENST00000564593 TEAD4Q15561 434 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 NIFKQ9BYG3 293 aaKnown RBP8.14□□□□□ -1.11
LINC00560-201ENST00000564593 POLMQ9NP87 494 aaPredicted RBP8.14□□□□□ -1.11
LINC00560-201ENST00000564593 RNF144AP50876 292 aaPredicted RBP8.14□□□□□ -1.11
LINC00560-201ENST00000564593 MTMR3Q13615 1198 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 C16orf46Q6P387 395 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 HELQQ8TDG4 1101 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 GRIP2Q9C0E4 1043 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 ADAMTS8Q9UP79 889 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 PARP3Q9Y6F1 533 aa8.14□□□□□ -1.11
LINC00560-201ENST00000564593 EML1O00423 815 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 BMP2P12643 396 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 GNASQ5JWF2 1037 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 C6orf118Q5T5N4 469 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 RHBDD1Q8TEB9 315 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 ZDHHC1Q8WTX9 485 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 L3MBTL2Q969R5 705 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 NGLY1Q96IV0 654 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 SAP130Q9H0E3 1048 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 HCN4Q9Y3Q4 1203 aa8.13□□□□□ -1.11
LINC00560-201ENST00000564593 CTSOP43234 321 aaPredicted RBP8.12□□□□□ -1.11
LINC00560-201ENST00000564593 KRT76Q01546 638 aa8.12□□□□□ -1.11
LINC00560-201ENST00000564593 SH3PXD2AQ5TCZ1 1133 aa8.12□□□□□ -1.11
LINC00560-201ENST00000564593 ZNF295-AS1Q8N0V1 137 aa8.12□□□□□ -1.11
LINC00560-201ENST00000564593 HIRAP54198 1017 aaPredicted RBP8.11□□□□□ -1.11
LINC00560-201ENST00000564593 COX20Q5RI15 118 aa8.11□□□□□ -1.11
LINC00560-201ENST00000564593 POTEAQ6S8J7 498 aa8.11□□□□□ -1.11
LINC00560-201ENST00000564593 MARSP56192 900 aaKnown RBP8.1□□□□□ -1.11
LINC00560-201ENST00000564593 FOXD4L5Q5VV16 416 aaPredicted RBP8.1□□□□□ -1.11
LINC00560-201ENST00000564593 ALDH16A1Q8IZ83 802 aa8.1□□□□□ -1.11
LINC00560-201ENST00000564593 QTRT2Q9H974 415 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms