RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 FCHSD2O94868 740 aa23.56■■□□□ 1.36
NME3-205ENST00000563854 DDR1Q08345 913 aa23.56■■□□□ 1.36
NME3-205ENST00000563854 CEMIPQ8WUJ3 1361 aa23.55■■□□□ 1.36
NME3-205ENST00000563854 HEG1Q9ULI3 1381 aa23.55■■□□□ 1.36
NME3-205ENST00000563854 BTBD11A6QL63 1104 aa23.55■■□□□ 1.36
NME3-205ENST00000563854 STARD3NLO95772 234 aa23.55■■□□□ 1.36
NME3-205ENST00000563854 MCM10Q7L590 875 aa23.55■■□□□ 1.36
NME3-205ENST00000563854 ZNF330Q9Y3S2 320 aaPredicted RBP23.55■■□□□ 1.36
NME3-205ENST00000563854 TGFB2P61812 414 aa23.54■■□□□ 1.36
NME3-205ENST00000563854 BCS1LQ9Y276 419 aa23.54■■□□□ 1.36
NME3-205ENST00000563854 DPEP1P16444 411 aa23.53■■□□□ 1.36
NME3-205ENST00000563854 DCTN1Q14203 1278 aa23.53■■□□□ 1.36
NME3-205ENST00000563854 FMNL2Q96PY5 1086 aa23.53■■□□□ 1.36
NME3-205ENST00000563854 KCNQ3O43525 872 aa23.52■■□□□ 1.36
NME3-205ENST00000563854 NEFMP07197 916 aa23.52■■□□□ 1.36
NME3-205ENST00000563854 NARFQ9UHQ1 456 aa23.52■■□□□ 1.36
NME3-205ENST00000563854 POLRMTO00411 1230 aaKnown RBP23.5■■□□□ 1.35
NME3-205ENST00000563854 TEX13AQ9BXU3 409 aaPredicted RBP23.5■■□□□ 1.35
NME3-205ENST00000563854 ATP10DQ9P241 1426 aa23.5■■□□□ 1.35
NME3-205ENST00000563854 TM4SF1P30408 202 aa23.48■■□□□ 1.35
NME3-205ENST00000563854 DDX10Q13206 875 aaKnown RBP23.48■■□□□ 1.35
NME3-205ENST00000563854 NFIXQ14938 502 aa23.48■■□□□ 1.35
NME3-205ENST00000563854 BICDL1Q6ZP65 573 aa23.48■■□□□ 1.35
NME3-205ENST00000563854 A0A087WZG4 1122 aa23.47■■□□□ 1.35
NME3-205ENST00000563854 GIGYF1O75420 1035 aaPredicted RBP23.47■■□□□ 1.35
NME3-205ENST00000563854 ZNF526Q8TF50 670 aaPredicted RBP23.47■■□□□ 1.35
NME3-205ENST00000563854 BCL2L12Q9HB09 334 aa23.47■■□□□ 1.35
NME3-205ENST00000563854 A1BGP04217 495 aa23.46■■□□□ 1.35
NME3-205ENST00000563854 EIF5P55010 431 aaKnown RBP23.46■■□□□ 1.35
NME3-205ENST00000563854 NPM2Q86SE8 214 aaKnown RBP23.46■■□□□ 1.35
NME3-205ENST00000563854 CHRNA5P30532 468 aa23.45■■□□□ 1.34
NME3-205ENST00000563854 TBC1D2BQ9UPU7 963 aa23.45■■□□□ 1.34
NME3-205ENST00000563854 SCN7AQ01118 1682 aa23.44■■□□□ 1.34
NME3-205ENST00000563854 MAPK8IP3Q9UPT6 1336 aa23.44■■□□□ 1.34
NME3-205ENST00000563854 PRAMEF22A3QJZ6 481 aa23.44■■□□□ 1.34
NME3-205ENST00000563854 HTATSF1O43719 755 aaKnown RBP23.44■■□□□ 1.34
NME3-205ENST00000563854 PIP4K2AP48426 406 aaPredicted RBP23.44■■□□□ 1.34
NME3-205ENST00000563854 ARHGAP27Q6ZUM4 889 aa23.44■■□□□ 1.34
NME3-205ENST00000563854 BRCA1P38398 1863 aaKnown RBP23.44■■□□□ 1.34
NME3-205ENST00000563854 ADCY9O60503 1353 aa23.43■■□□□ 1.34
NME3-205ENST00000563854 AFDNP55196 1824 aaKnown RBP23.43■■□□□ 1.34
NME3-205ENST00000563854 SERPINB2P05120 415 aa23.43■■□□□ 1.34
NME3-205ENST00000563854 KCNA3P22001 575 aa23.43■■□□□ 1.34
NME3-205ENST00000563854 RALBP1Q15311 655 aa23.43■■□□□ 1.34
NME3-205ENST00000563854 PIM2Q9P1W9 311 aa23.43■■□□□ 1.34
NME3-205ENST00000563854 DLG5Q8TDM6 1919 aa23.42■■□□□ 1.34
NME3-205ENST00000563854 IL6STP40189 918 aaPredicted RBP23.42■■□□□ 1.34
NME3-205ENST00000563854 C1QTNF8P60827 252 aa23.42■■□□□ 1.34
NME3-205ENST00000563854 MIS18AQ9NYP9 233 aa23.42■■□□□ 1.34
NME3-205ENST00000563854 USP16Q9Y5T5 823 aa23.42■■□□□ 1.34
NME3-205ENST00000563854 DALRD3Q5D0E6 543 aaKnown RBP23.41■■□□□ 1.34
NME3-205ENST00000563854 PLEKHF1Q96S99 279 aa23.41■■□□□ 1.34
NME3-205ENST00000563854 GPBP1L1Q9HC44 474 aaPredicted RBP23.41■■□□□ 1.34
NME3-205ENST00000563854 SNRPA1P09661 255 aaKnown RBP23.4■■□□□ 1.34
NME3-205ENST00000563854 TAF7Q15545 349 aaPredicted RBP23.4■■□□□ 1.34
NME3-205ENST00000563854 NFE2L2Q16236 605 aa23.4■■□□□ 1.34
NME3-205ENST00000563854 TBC1D9BQ66K14 1250 aa23.4■■□□□ 1.34
NME3-205ENST00000563854 NRXN2Q9P2S2 1712 aa23.39■■□□□ 1.34
NME3-205ENST00000563854 THUMPD2Q9BTF0 503 aaKnown RBP23.39■■□□□ 1.33
NME3-205ENST00000563854 PNNQ9H307 717 aaKnown RBP23.39■■□□□ 1.33
NME3-205ENST00000563854 CARMIL3Q8ND23 1372 aa23.39■■□□□ 1.33
NME3-205ENST00000563854 DZIP3Q86Y13 1208 aaKnown RBP23.38■■□□□ 1.33
NME3-205ENST00000563854 ARFGEF1Q9Y6D6 1849 aa23.37■■□□□ 1.33
NME3-205ENST00000563854 SENP3-EIF4A1A0A087X0R7 540 aa23.36■■□□□ 1.33
NME3-205ENST00000563854 NPHP1O15259 732 aa23.36■■□□□ 1.33
NME3-205ENST00000563854 MYBBP1AQ9BQG0 1328 aaKnown RBP23.35■■□□□ 1.33
NME3-205ENST00000563854 BCORQ6W2J9 1755 aa23.35■■□□□ 1.33
NME3-205ENST00000563854 CAMTA2O94983 1202 aa23.35■■□□□ 1.33
NME3-205ENST00000563854 C2CD5Q86YS7 1000 aa23.35■■□□□ 1.33
NME3-205ENST00000563854 CCDC24Q8N4L8 307 aa23.35■■□□□ 1.33
NME3-205ENST00000563854 PNISRQ8TF01 805 aaKnown RBP23.34■■□□□ 1.33
NME3-205ENST00000563854 KDM3BQ7LBC6 1761 aa23.34■■□□□ 1.33
NME3-205ENST00000563854 LAMB4A4D0S4 1761 aa23.33■■□□□ 1.33
NME3-205ENST00000563854 SETDB2Q96T68 719 aa23.32■■□□□ 1.32
NME3-205ENST00000563854 H0YIN7 160 aa23.31■■□□□ 1.32
NME3-205ENST00000563854 C9orf131Q5VYM1 1079 aa23.31■■□□□ 1.32
NME3-205ENST00000563854 PRR5LQ6MZQ0 368 aa23.31■■□□□ 1.32
NME3-205ENST00000563854 DLEC1Q9Y238 1755 aa23.31■■□□□ 1.32
NME3-205ENST00000563854 NBPF26B4DH59 902 aa23.3■■□□□ 1.32
NME3-205ENST00000563854 RIPK4P57078 832 aa23.3■■□□□ 1.32
NME3-205ENST00000563854 NBPF10Q6P3W6 841 aaKnown RBP23.3■■□□□ 1.32
NME3-205ENST00000563854 CCDC146Q8IYE0 955 aa23.3■■□□□ 1.32
NME3-205ENST00000563854 NBPF15Q8N660 670 aa23.3■■□□□ 1.32
NME3-205ENST00000563854 CNBD1Q8NA66 436 aa23.3■■□□□ 1.32
NME3-205ENST00000563854 NGEFQ8N5V2 710 aa23.29■■□□□ 1.32
NME3-205ENST00000563854 ANKRD31Q8N7Z5 1873 aa23.29■■□□□ 1.32
NME3-205ENST00000563854 RNF181Q9P0P0 153 aa23.29■■□□□ 1.32
NME3-205ENST00000563854 ZNF652Q9Y2D9 606 aa23.29■■□□□ 1.32
NME3-205ENST00000563854 WDR43Q15061 677 aaKnown RBP eCLIP23.28■■□□□ 1.32
NME3-205ENST00000563854 TTLL6Q8N841 843 aa23.28■■□□□ 1.32
NME3-205ENST00000563854 ZNF622Q969S3 477 aaKnown RBP eCLIP23.28■■□□□ 1.32
NME3-205ENST00000563854 RRP7AQ9Y3A4 280 aaKnown RBP23.28■■□□□ 1.32
NME3-205ENST00000563854 PDE6BP35913 854 aa23.27■■□□□ 1.32
NME3-205ENST00000563854 EIF4A1P60842 406 aaKnown RBP23.27■■□□□ 1.32
NME3-205ENST00000563854 ST5P78524 1137 aa23.27■■□□□ 1.32
NME3-205ENST00000563854 RASSF7Q02833 373 aa23.27■■□□□ 1.32
NME3-205ENST00000563854 TSPYL4Q9UJ04 414 aa23.27■■□□□ 1.32
NME3-205ENST00000563854 COL11A2P13942 1736 aaPredicted RBP23.27■■□□□ 1.32
NME3-205ENST00000563854 NEUROD2Q15784 382 aa23.26■■□□□ 1.31
NME3-205ENST00000563854 BRIP1Q9BX63 1249 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms