RNA–Protein interactions for RNA: ENST00000563835.1

PTPN9-203, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-203ENST00000563835 CD2APQ9Y5K6 639 aa12.31□□□□□ -0.44
PTPN9-203ENST00000563835 HEG1Q9ULI3 1381 aa12.3□□□□□ -0.44
PTPN9-203ENST00000563835 FKBP8Q14318 412 aa12.3□□□□□ -0.44
PTPN9-203ENST00000563835 ZNF790Q6PG37 636 aa12.3□□□□□ -0.44
PTPN9-203ENST00000563835 NRXN2Q9P2S2 1712 aa12.3□□□□□ -0.44
PTPN9-203ENST00000563835 DDR1Q08345 913 aa12.29□□□□□ -0.44
PTPN9-203ENST00000563835 VSIG10Q8N0Z9 540 aa12.29□□□□□ -0.44
PTPN9-203ENST00000563835 PLEKHF1Q96S99 279 aa12.29□□□□□ -0.44
PTPN9-203ENST00000563835 PRAMEF22A3QJZ6 481 aa12.28□□□□□ -0.44
PTPN9-203ENST00000563835 BTBD11A6QL63 1104 aa12.28□□□□□ -0.44
PTPN9-203ENST00000563835 CANXP27824 592 aaKnown RBP12.28□□□□□ -0.44
PTPN9-203ENST00000563835 USPL1Q5W0Q7 1092 aa12.28□□□□□ -0.44
PTPN9-203ENST00000563835 NLGN1Q8N2Q7 840 aa12.28□□□□□ -0.44
PTPN9-203ENST00000563835 DLEC1Q9Y238 1755 aa12.28□□□□□ -0.44
PTPN9-203ENST00000563835 RALBP1Q15311 655 aa12.27□□□□□ -0.45
PTPN9-203ENST00000563835 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.45
PTPN9-203ENST00000563835 THUMPD2Q9BTF0 503 aaKnown RBP12.27□□□□□ -0.45
PTPN9-203ENST00000563835 MYBBP1AQ9BQG0 1328 aaKnown RBP12.27□□□□□ -0.45
PTPN9-203ENST00000563835 ANKRD31Q8N7Z5 1873 aa12.27□□□□□ -0.45
PTPN9-203ENST00000563835 COL11A2P13942 1736 aaPredicted RBP12.26□□□□□ -0.45
PTPN9-203ENST00000563835 ARFGEF1Q9Y6D6 1849 aa12.26□□□□□ -0.45
PTPN9-203ENST00000563835 PIP4K2AP48426 406 aaPredicted RBP12.26□□□□□ -0.45
PTPN9-203ENST00000563835 FMNL2Q96PY5 1086 aa12.26□□□□□ -0.45
PTPN9-203ENST00000563835 BCL2L12Q9HB09 334 aa12.26□□□□□ -0.45
PTPN9-203ENST00000563835 POLRMTO00411 1230 aaKnown RBP12.25□□□□□ -0.45
PTPN9-203ENST00000563835 ZNF784Q8NCA9 323 aaPredicted RBP12.25□□□□□ -0.45
PTPN9-203ENST00000563835 MIS18AQ9NYP9 233 aa12.25□□□□□ -0.45
PTPN9-203ENST00000563835 NARFQ9UHQ1 456 aa12.25□□□□□ -0.45
PTPN9-203ENST00000563835 ZNF330Q9Y3S2 320 aaPredicted RBP12.25□□□□□ -0.45
PTPN9-203ENST00000563835 PARP3Q9Y6F1 533 aa12.25□□□□□ -0.45
PTPN9-203ENST00000563835 A0A0G2JLW4 131 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 ZPR1O75312 459 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 A1BGP04217 495 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 EIF5P55010 431 aaKnown RBP12.24□□□□□ -0.45
PTPN9-203ENST00000563835 NFE2L2Q16236 605 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 CARMIL3Q8ND23 1372 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 MAPK8IP3Q9UPT6 1336 aa12.24□□□□□ -0.45
PTPN9-203ENST00000563835 CACNA1SQ13698 1873 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 STARD3NLO95772 234 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 DPEP1P16444 411 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 NFIXQ14938 502 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 CCDC146Q8IYE0 955 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 USP16Q9Y5T5 823 aa12.23□□□□□ -0.45
PTPN9-203ENST00000563835 HTATSF1O43719 755 aaKnown RBP12.22□□□□□ -0.45
PTPN9-203ENST00000563835 GRIN3BO60391 1043 aa12.22□□□□□ -0.45
PTPN9-203ENST00000563835 NEFMP07197 916 aa12.22□□□□□ -0.45
PTPN9-203ENST00000563835 TM4SF1P30408 202 aa12.22□□□□□ -0.45
PTPN9-203ENST00000563835 TBC1D2BQ9UPU7 963 aa12.22□□□□□ -0.45
PTPN9-203ENST00000563835 BICDL1Q6ZP65 573 aa12.21□□□□□ -0.45
PTPN9-203ENST00000563835 PRKRIP1Q9H875 184 aaPredicted RBP12.21□□□□□ -0.45
PTPN9-203ENST00000563835 ADCY9O60503 1353 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 KCNA3P22001 575 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 CHRNA5P30532 468 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 IL6STP40189 918 aaPredicted RBP12.2□□□□□ -0.46
PTPN9-203ENST00000563835 TGFB2P61812 414 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 TAF7Q15545 349 aaPredicted RBP12.2□□□□□ -0.46
PTPN9-203ENST00000563835 TBC1D9BQ66K14 1250 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 TEX13AQ9BXU3 409 aaPredicted RBP12.2□□□□□ -0.46
PTPN9-203ENST00000563835 BCS1LQ9Y276 419 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 RRP7AQ9Y3A4 280 aaKnown RBP12.2□□□□□ -0.46
PTPN9-203ENST00000563835 ATP10DQ9P241 1426 aa12.2□□□□□ -0.46
PTPN9-203ENST00000563835 NUP98P52948 1817 aa12.19□□□□□ -0.46
PTPN9-203ENST00000563835 NBPF26B4DH59 902 aa12.19□□□□□ -0.46
PTPN9-203ENST00000563835 CAMTA2O94983 1202 aa12.19□□□□□ -0.46
PTPN9-203ENST00000563835 SNRPA1P09661 255 aaKnown RBP12.19□□□□□ -0.46
PTPN9-203ENST00000563835 NBPF10Q6P3W6 841 aaKnown RBP12.19□□□□□ -0.46
PTPN9-203ENST00000563835 NBPF15Q8N660 670 aa12.19□□□□□ -0.46
PTPN9-203ENST00000563835 A0A087WZG4 1122 aa12.18□□□□□ -0.46
PTPN9-203ENST00000563835 SERPINB2P05120 415 aa12.18□□□□□ -0.46
PTPN9-203ENST00000563835 TMPOP42166 694 aaKnown RBP12.18□□□□□ -0.46
PTPN9-203ENST00000563835 RIPK4P57078 832 aa12.18□□□□□ -0.46
PTPN9-203ENST00000563835 TNRC6CQ9HCJ0 1690 aaKnown RBP12.18□□□□□ -0.46
PTPN9-203ENST00000563835 ARFGEF2Q9Y6D5 1785 aa12.18□□□□□ -0.46
PTPN9-203ENST00000563835 SBF1O95248 1867 aa12.17□□□□□ -0.46
PTPN9-203ENST00000563835 EIF4A1P60842 406 aaKnown RBP12.17□□□□□ -0.46
PTPN9-203ENST00000563835 WDR43Q15061 677 aaKnown RBP eCLIP12.17□□□□□ -0.46
PTPN9-203ENST00000563835 NEUROD2Q15784 382 aa12.17□□□□□ -0.46
PTPN9-203ENST00000563835 DZIP3Q86Y13 1208 aaKnown RBP12.17□□□□□ -0.46
PTPN9-203ENST00000563835 CCDC24Q8N4L8 307 aa12.17□□□□□ -0.46
PTPN9-203ENST00000563835 PNNQ9H307 717 aaKnown RBP12.17□□□□□ -0.46
PTPN9-203ENST00000563835 ADAMTS8Q9UP79 889 aa12.17□□□□□ -0.46
PTPN9-203ENST00000563835 GIGYF1O75420 1035 aaPredicted RBP12.16□□□□□ -0.46
PTPN9-203ENST00000563835 ZEB1P37275 1124 aaPredicted RBP12.16□□□□□ -0.46
PTPN9-203ENST00000563835 PNISRQ8TF01 805 aaKnown RBP12.16□□□□□ -0.46
PTPN9-203ENST00000563835 TIAM2Q8IVF5 1701 aa12.16□□□□□ -0.46
PTPN9-203ENST00000563835 CCDC184Q52MB2 194 aa12.15□□□□□ -0.46
PTPN9-203ENST00000563835 ZNF526Q8TF50 670 aaPredicted RBP12.15□□□□□ -0.46
PTPN9-203ENST00000563835 TSPYL4Q9UJ04 414 aa12.15□□□□□ -0.46
PTPN9-203ENST00000563835 ANKRD36CQ5JPF3 1778 aa12.15□□□□□ -0.46
PTPN9-203ENST00000563835 CCDC88AQ3V6T2 1871 aa12.14□□□□□ -0.47
PTPN9-203ENST00000563835 PRR5LQ6MZQ0 368 aa12.14□□□□□ -0.47
PTPN9-203ENST00000563835 RUNDC1Q96C34 613 aa12.14□□□□□ -0.47
PTPN9-203ENST00000563835 PIM2Q9P1W9 311 aa12.14□□□□□ -0.47
PTPN9-203ENST00000563835 TRIM35Q9UPQ4 493 aa12.14□□□□□ -0.47
PTPN9-203ENST00000563835 LMOD3Q0VAK6 560 aa12.13□□□□□ -0.47
PTPN9-203ENST00000563835 KRT24Q2M2I5 525 aa12.13□□□□□ -0.47
PTPN9-203ENST00000563835 DALRD3Q5D0E6 543 aaKnown RBP12.13□□□□□ -0.47
PTPN9-203ENST00000563835 ARHGAP27Q6ZUM4 889 aa12.13□□□□□ -0.47
PTPN9-203ENST00000563835 NPM2Q86SE8 214 aaKnown RBP12.13□□□□□ -0.47
PTPN9-203ENST00000563835 C2CD5Q86YS7 1000 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms