RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZPR1O75312 459 aa23.07■■□□□ 1.28
VPS9D1-203ENST00000563798 DPEP1P16444 411 aa23.07■■□□□ 1.28
VPS9D1-203ENST00000563798 KCNA3P22001 575 aa23.07■■□□□ 1.28
VPS9D1-203ENST00000563798 WWC3Q9ULE0 1092 aa23.07■■□□□ 1.28
VPS9D1-203ENST00000563798 COL15A1P39059 1388 aa23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 HEG1Q9ULI3 1381 aa23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 POLRMTO00411 1230 aaKnown RBP23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 FCHSD2O94868 740 aa23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 STARD3NLO95772 234 aa23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 USPL1Q5W0Q7 1092 aa23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 ZNF496Q96IT1 587 aaPredicted RBP23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 TEX13AQ9BXU3 409 aaPredicted RBP23.06■■□□□ 1.28
VPS9D1-203ENST00000563798 BRCA1P38398 1863 aaKnown RBP23.05■■□□□ 1.28
VPS9D1-203ENST00000563798 EIF5P55010 431 aaKnown RBP23.04■■□□□ 1.28
VPS9D1-203ENST00000563798 BCL2L12Q9HB09 334 aa23.04■■□□□ 1.28
VPS9D1-203ENST00000563798 U2AF1L5P0DN76 240 aaPredicted RBP23.03■■□□□ 1.28
VPS9D1-203ENST00000563798 U2AF1Q01081 240 aaKnown RBP eCLIP23.03■■□□□ 1.28
VPS9D1-203ENST00000563798 BCS1LQ9Y276 419 aa23.03■■□□□ 1.28
VPS9D1-203ENST00000563798 NFIXQ14938 502 aa23.01■■□□□ 1.27
VPS9D1-203ENST00000563798 FMNL2Q96PY5 1086 aa23.01■■□□□ 1.27
VPS9D1-203ENST00000563798 GPBP1L1Q9HC44 474 aaPredicted RBP23.01■■□□□ 1.27
VPS9D1-203ENST00000563798 PIM2Q9P1W9 311 aa23.01■■□□□ 1.27
VPS9D1-203ENST00000563798 NRXN2Q9P2S2 1712 aa23■■□□□ 1.27
VPS9D1-203ENST00000563798 A0A087WZG4 1122 aa23■■□□□ 1.27
VPS9D1-203ENST00000563798 HTATSF1O43719 755 aaKnown RBP23■■□□□ 1.27
VPS9D1-203ENST00000563798 CANXP27824 592 aaKnown RBP23■■□□□ 1.27
VPS9D1-203ENST00000563798 BTBD11A6QL63 1104 aa22.98■■□□□ 1.27
VPS9D1-203ENST00000563798 IL6STP40189 918 aaPredicted RBP22.98■■□□□ 1.27
VPS9D1-203ENST00000563798 ARFGEF1Q9Y6D6 1849 aa22.98■■□□□ 1.27
VPS9D1-203ENST00000563798 KCNQ3O43525 872 aa22.96■■□□□ 1.27
VPS9D1-203ENST00000563798 DALRD3Q5D0E6 543 aaKnown RBP22.96■■□□□ 1.27
VPS9D1-203ENST00000563798 ARHGAP27Q6ZUM4 889 aa22.96■■□□□ 1.27
VPS9D1-203ENST00000563798 RTF1Q92541 710 aaKnown RBP22.96■■□□□ 1.27
VPS9D1-203ENST00000563798 SENP3-EIF4A1A0A087X0R7 540 aa22.95■■□□□ 1.26
VPS9D1-203ENST00000563798 SERPINB2P05120 415 aa22.95■■□□□ 1.26
VPS9D1-203ENST00000563798 AFDNP55196 1824 aaKnown RBP22.95■■□□□ 1.26
VPS9D1-203ENST00000563798 CHRNA5P30532 468 aa22.94■■□□□ 1.26
VPS9D1-203ENST00000563798 MCM10Q7L590 875 aa22.93■■□□□ 1.26
VPS9D1-203ENST00000563798 A1BGP04217 495 aa22.92■■□□□ 1.26
VPS9D1-203ENST00000563798 SCN7AQ01118 1682 aa22.92■■□□□ 1.26
VPS9D1-203ENST00000563798 USP16Q9Y5T5 823 aa22.91■■□□□ 1.26
VPS9D1-203ENST00000563798 SNRPA1P09661 255 aaKnown RBP22.9■■□□□ 1.26
VPS9D1-203ENST00000563798 ZNF526Q8TF50 670 aaPredicted RBP22.9■■□□□ 1.26
VPS9D1-203ENST00000563798 PLEKHF1Q96S99 279 aa22.9■■□□□ 1.26
VPS9D1-203ENST00000563798 KIF3CO14782 793 aa22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 CAMTA2O94983 1202 aa22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 DCTN1Q14203 1278 aa22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 TAF7Q15545 349 aaPredicted RBP22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 TBC1D9BQ66K14 1250 aa22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 TBC1D2BQ9UPU7 963 aa22.89■■□□□ 1.25
VPS9D1-203ENST00000563798 PDZRN3Q9UPQ7 1066 aa22.88■■□□□ 1.25
VPS9D1-203ENST00000563798 DLEC1Q9Y238 1755 aa22.88■■□□□ 1.25
VPS9D1-203ENST00000563798 C9orf131Q5VYM1 1079 aa22.87■■□□□ 1.25
VPS9D1-203ENST00000563798 CARMIL3Q8ND23 1372 aa22.87■■□□□ 1.25
VPS9D1-203ENST00000563798 PRAMEF22A3QJZ6 481 aa22.86■■□□□ 1.25
VPS9D1-203ENST00000563798 RGL2O15211 777 aa22.86■■□□□ 1.25
VPS9D1-203ENST00000563798 NEFMP07197 916 aa22.86■■□□□ 1.25
VPS9D1-203ENST00000563798 BICDL1Q6ZP65 573 aa22.86■■□□□ 1.25
VPS9D1-203ENST00000563798 NPM2Q86SE8 214 aaKnown RBP22.86■■□□□ 1.25
VPS9D1-203ENST00000563798 BRIP1Q9BX63 1249 aa22.85■■□□□ 1.25
VPS9D1-203ENST00000563798 PNNQ9H307 717 aaKnown RBP22.85■■□□□ 1.25
VPS9D1-203ENST00000563798 ZNF330Q9Y3S2 320 aaPredicted RBP22.85■■□□□ 1.25
VPS9D1-203ENST00000563798 H0YIN7 160 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 RALBP1Q15311 655 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 PRR5LQ6MZQ0 368 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 CLEC4GQ6UXB4 293 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 DZIP3Q86Y13 1208 aaKnown RBP22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 C2CD5Q86YS7 1000 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 TTLL6Q8N841 843 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 PNISRQ8TF01 805 aaKnown RBP22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 BCORQ6W2J9 1755 aa22.84■■□□□ 1.25
VPS9D1-203ENST00000563798 NFE2L2Q16236 605 aa22.83■■□□□ 1.25
VPS9D1-203ENST00000563798 SETDB2Q96T68 719 aa22.83■■□□□ 1.25
VPS9D1-203ENST00000563798 NBPF26B4DH59 902 aa22.82■■□□□ 1.24
VPS9D1-203ENST00000563798 PDE6BP35913 854 aa22.82■■□□□ 1.24
VPS9D1-203ENST00000563798 NBPF10Q6P3W6 841 aaKnown RBP22.82■■□□□ 1.24
VPS9D1-203ENST00000563798 NBPF15Q8N660 670 aa22.82■■□□□ 1.24
VPS9D1-203ENST00000563798 ANKRD31Q8N7Z5 1873 aa22.81■■□□□ 1.24
VPS9D1-203ENST00000563798 ZC3H4Q9UPT8 1303 aaKnown RBP22.81■■□□□ 1.24
VPS9D1-203ENST00000563798 DLG5Q8TDM6 1919 aa22.8■■□□□ 1.24
VPS9D1-203ENST00000563798 SBF1O95248 1867 aa22.8■■□□□ 1.24
VPS9D1-203ENST00000563798 HSPA6P17066 643 aa22.8■■□□□ 1.24
VPS9D1-203ENST00000563798 RNF181Q9P0P0 153 aa22.8■■□□□ 1.24
VPS9D1-203ENST00000563798 TOMM70O94826 608 aa22.79■■□□□ 1.24
VPS9D1-203ENST00000563798 PIP4K2AP48426 406 aaPredicted RBP22.79■■□□□ 1.24
VPS9D1-203ENST00000563798 MIS18AQ9NYP9 233 aa22.79■■□□□ 1.24
VPS9D1-203ENST00000563798 KDM3BQ7LBC6 1761 aa22.78■■□□□ 1.24
VPS9D1-203ENST00000563798 CNBD1Q8NA66 436 aa22.78■■□□□ 1.24
VPS9D1-203ENST00000563798 NMRK2Q9NPI5 230 aa22.78■■□□□ 1.24
VPS9D1-203ENST00000563798 ZNF652Q9Y2D9 606 aa22.78■■□□□ 1.24
VPS9D1-203ENST00000563798 EIF4A1P60842 406 aaKnown RBP22.77■■□□□ 1.24
VPS9D1-203ENST00000563798 MAPK8IP3Q9UPT6 1336 aa22.77■■□□□ 1.24
VPS9D1-203ENST00000563798 LAMB4A4D0S4 1761 aa22.76■■□□□ 1.23
VPS9D1-203ENST00000563798 CEP350Q5VT06 3117 aa22.76■■□□□ 1.23
VPS9D1-203ENST00000563798 LMNB1P20700 586 aa22.76■■□□□ 1.23
VPS9D1-203ENST00000563798 KDM2BQ8NHM5 1336 aa22.76■■□□□ 1.23
VPS9D1-203ENST00000563798 PRELPP51888 382 aa22.75■■□□□ 1.23
VPS9D1-203ENST00000563798 ST5P78524 1137 aa22.75■■□□□ 1.23
VPS9D1-203ENST00000563798 COL11A2P13942 1736 aaPredicted RBP22.74■■□□□ 1.23
VPS9D1-203ENST00000563798 NFKBIEO00221 500 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms