RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 CLUAP1Q96AJ1 413 aa12.99□□□□□ -0.33
SMG1-208ENST00000563448 USP16Q9Y5T5 823 aa12.99□□□□□ -0.33
SMG1-208ENST00000563448 RGS12O14924 1447 aa12.99□□□□□ -0.33
SMG1-208ENST00000563448 LY75O60449 1722 aa12.98□□□□□ -0.33
SMG1-208ENST00000563448 ZNF831Q5JPB2 1677 aa12.98□□□□□ -0.33
SMG1-208ENST00000563448 KCNQ2O43526 872 aa12.98□□□□□ -0.33
SMG1-208ENST00000563448 PTCD1O75127 700 aaKnown RBP12.98□□□□□ -0.33
SMG1-208ENST00000563448 CHPF2Q9P2E5 772 aa12.98□□□□□ -0.33
SMG1-208ENST00000563448 COL5A3P25940 1745 aaPredicted RBP12.98□□□□□ -0.33
SMG1-208ENST00000563448 DZIP1LQ8IYY4 767 aaKnown RBP12.98□□□□□ -0.33
SMG1-208ENST00000563448 CHMP4AQ9BY43 222 aa12.98□□□□□ -0.33
SMG1-208ENST00000563448 PTPRCP08575 1304 aa12.97□□□□□ -0.33
SMG1-208ENST00000563448 MS4A1P11836 297 aa12.96□□□□□ -0.33
SMG1-208ENST00000563448 PHAXQ9H814 394 aaKnown RBP12.96□□□□□ -0.33
SMG1-208ENST00000563448 COG6Q9Y2V7 657 aa12.96□□□□□ -0.33
SMG1-208ENST00000563448 TAF1LQ8IZX4 1826 aa12.96□□□□□ -0.33
SMG1-208ENST00000563448 ANXA1P04083 346 aa12.96□□□□□ -0.34
SMG1-208ENST00000563448 PDIA6Q15084 440 aa12.96□□□□□ -0.34
SMG1-208ENST00000563448 RBM42Q9BTD8 480 aaKnown RBP12.96□□□□□ -0.34
SMG1-208ENST00000563448 API5Q9BZZ5 524 aaKnown RBP12.96□□□□□ -0.34
SMG1-208ENST00000563448 DBF4Q9UBU7 674 aaPredicted RBP12.96□□□□□ -0.34
SMG1-208ENST00000563448 MYH14Q7Z406 1995 aaKnown RBP12.95□□□□□ -0.34
SMG1-208ENST00000563448 ARFGEF2Q9Y6D5 1785 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 RXRBP28702 533 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 FLIIQ13045 1269 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 PROSER3Q2NL68 480 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 POTEAQ6S8J7 498 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 ILDR2Q71H61 639 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 PTF1AQ7RTS3 328 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 KRT27Q7Z3Y8 459 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 FTSJ3Q8IY81 847 aaKnown RBP12.95□□□□□ -0.34
SMG1-208ENST00000563448 VSIG10Q8N0Z9 540 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 TMEM57Q8N5G2 664 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 SLC4A9Q96Q91 983 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 ABCC4O15439 1325 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.34
SMG1-208ENST00000563448 RREB1Q92766 1687 aa12.95□□□□□ -0.34
SMG1-208ENST00000563448 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
SMG1-208ENST00000563448 MVPQ14764 893 aaKnown RBP12.94□□□□□ -0.34
SMG1-208ENST00000563448 PPP4R2Q9NY27 417 aa12.94□□□□□ -0.34
SMG1-208ENST00000563448 AFDNP55196 1824 aaKnown RBP12.94□□□□□ -0.34
SMG1-208ENST00000563448 DNAJC10Q8IXB1 793 aa12.93□□□□□ -0.34
SMG1-208ENST00000563448 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
SMG1-208ENST00000563448 PIP4K2AP48426 406 aaPredicted RBP12.93□□□□□ -0.34
SMG1-208ENST00000563448 FKBP5Q13451 457 aaPredicted RBP12.93□□□□□ -0.34
SMG1-208ENST00000563448 LRP10Q7Z4F1 713 aa12.93□□□□□ -0.34
SMG1-208ENST00000563448 TEX13AQ9BXU3 409 aaPredicted RBP12.93□□□□□ -0.34
SMG1-208ENST00000563448 HYPKQ9NX55 129 aa12.93□□□□□ -0.34
SMG1-208ENST00000563448 MYL6BP14649 208 aa12.92□□□□□ -0.34
SMG1-208ENST00000563448 SMARCC1Q92922 1105 aaPredicted RBP12.92□□□□□ -0.34
SMG1-208ENST00000563448 ERBB4Q15303 1308 aa12.92□□□□□ -0.34
SMG1-208ENST00000563448 NBPF26B4DH59 902 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 F6X3S4 739 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 A1BGP04217 495 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 NBPF14Q5TI25 921 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 NBPF10Q6P3W6 841 aaKnown RBP12.91□□□□□ -0.34
SMG1-208ENST00000563448 FAM196AQ6ZSG2 479 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 ITPRIPQ8IWB1 547 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 NBPF15Q8N660 670 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 PXDNLA1KZ92 1463 aa12.91□□□□□ -0.34
SMG1-208ENST00000563448 ADCY9O60503 1353 aa12.9□□□□□ -0.34
SMG1-208ENST00000563448 NUP98P52948 1817 aa12.9□□□□□ -0.34
SMG1-208ENST00000563448 LOC102724428A0A0B4J2F2 783 aa12.9□□□□□ -0.34
SMG1-208ENST00000563448 SIK1P57059 783 aa12.9□□□□□ -0.34
SMG1-208ENST00000563448 INTS3Q68E01 1043 aaKnown RBP12.9□□□□□ -0.34
SMG1-208ENST00000563448 DDX19BQ9UMR2 479 aa12.9□□□□□ -0.34
SMG1-208ENST00000563448 TNS1Q9HBL0 1735 aaKnown RBP12.9□□□□□ -0.34
SMG1-208ENST00000563448 CYP19A1P11511 503 aaPredicted RBP12.89□□□□□ -0.35
SMG1-208ENST00000563448 ATP6V1AP38606 617 aa12.89□□□□□ -0.35
SMG1-208ENST00000563448 BCL11BQ9C0K0 894 aaPredicted RBP12.89□□□□□ -0.35
SMG1-208ENST00000563448 ANKRD36CQ5JPF3 1778 aa12.89□□□□□ -0.35
SMG1-208ENST00000563448 AIMP1Q12904 312 aaKnown RBP12.89□□□□□ -0.35
SMG1-208ENST00000563448 ITPK1Q13572 414 aa12.89□□□□□ -0.35
SMG1-208ENST00000563448 XAGE3Q8WTP9 111 aa12.89□□□□□ -0.35
SMG1-208ENST00000563448 PI4KAP2A4QPH2 592 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 STARD3NLO95772 234 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 B4GALNT3Q6L9W6 998 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 SLC4A10Q6U841 1118 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 COPS6Q7L5N1 327 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 PI4KAP1Q8N8J0 262 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 ZBTB7BO15156 539 aaPredicted RBP12.88□□□□□ -0.35
SMG1-208ENST00000563448 KSR2Q6VAB6 950 aa12.88□□□□□ -0.35
SMG1-208ENST00000563448 CCT4P50991 539 aaKnown RBP12.87□□□□□ -0.35
SMG1-208ENST00000563448 DNAAF4Q8WXU2 420 aa12.87□□□□□ -0.35
SMG1-208ENST00000563448 TRIM37O94972 964 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 AAMPQ13685 434 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 MAP3K2Q9Y2U5 619 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 ATP10DQ9P241 1426 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 DDX58O95786 925 aaKnown RBP12.86□□□□□ -0.35
SMG1-208ENST00000563448 CCDC136Q96JN2 1154 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 ZBTB40Q9NUA8 1239 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 ZBTB1Q9Y2K1 713 aa12.86□□□□□ -0.35
SMG1-208ENST00000563448 C4BP0C0L5 1744 aa12.85□□□□□ -0.35
SMG1-208ENST00000563448 BCORQ6W2J9 1755 aa12.85□□□□□ -0.35
SMG1-208ENST00000563448 KCNQ4P56696 695 aa12.85□□□□□ -0.35
SMG1-208ENST00000563448 BEND3Q5T5X7 828 aa12.85□□□□□ -0.35
SMG1-208ENST00000563448 INTS5Q6P9B9 1019 aaKnown RBP12.85□□□□□ -0.35
SMG1-208ENST00000563448 TTLL7Q6ZT98 887 aa12.85□□□□□ -0.35
SMG1-208ENST00000563448 RGPD3A6NKT7 1758 aaPredicted RBP12.84□□□□□ -0.35
SMG1-208ENST00000563448 CRKLP46109 303 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms