RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CCDC194A0A1B0GVG4 234 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 FAM187AA6NFU0 413 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 NEFLP07196 543 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 ARHGAP4P98171 946 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 FANCCQ00597 558 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 RBL2Q08999 1139 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 DPYDQ12882 1025 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 COL19A1Q14993 1142 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 ZNF746Q6NUN9 644 aaPredicted RBP7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 APBB1IPQ7Z5R6 666 aaPredicted RBP7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 NFATC2IPQ8NCF5 419 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 NLRP2Q9NX02 1062 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 GABBR1Q9UBS5 961 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 THOC2Q8NI27 1593 aaKnown RBP7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 MCCD1P59942 119 aaPredicted RBP7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 MTMR3Q13615 1198 aa7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 RC3H1Q5TC82 1133 aaKnown RBP7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 ARMC2Q8NEN0 867 aa7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 SNIP1Q8TAD8 396 aaKnown RBP7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 PMM1Q92871 262 aa7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 EVI5LQ96CN4 794 aa7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 MRPL42Q9Y6G3 142 aaKnown RBP7.05□□□□□ -1.28
VPS35P1-201ENST00000563400 NCOA4Q13772 614 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 BMS1Q14692 1282 aaKnown RBP7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 HSP90AB4PQ58FF6 505 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 PTCRAQ6ISU1 281 aaPredicted RBP7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 EHBP1Q8NDI1 1231 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 ARMC5Q96C12 935 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 PRIMPOLQ96LW4 560 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 GMLQ99445 158 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 POLA1P09884 1462 aaPredicted RBP7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 FGD5Q6ZNL6 1462 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 TOP2BQ02880 1626 aa7.04□□□□□ -1.28
VPS35P1-201ENST00000563400 GRIN2BQ13224 1484 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 C21orf2O43822 256 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 SWI5Q1ZZU3 235 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 TAS1R3Q7RTX0 852 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 RGL4Q8IZJ4 473 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 PNMA1Q8ND90 353 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 RNF34Q969K3 372 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 MRGPRX2Q96LB1 330 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 COL4A3BPQ9Y5P4 624 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 ABCA10Q8WWZ4 1543 aa7.03□□□□□ -1.28
VPS35P1-201ENST00000563400 FBXO45P0C2W1 286 aa7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 GTF3C2Q8WUA4 911 aaPredicted RBP7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 ZNF594Q96JF6 807 aaPredicted RBP7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 TOR4AQ9NXH8 423 aa7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 SEPT3Q9UH03 358 aa7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 G3BP2Q9UN86 482 aaKnown RBP7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 DNMT3AQ9Y6K1 912 aaPredicted RBP7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 GAPVD1Q14C86 1478 aa7.02□□□□□ -1.29
VPS35P1-201ENST00000563400 NR1H3Q13133 447 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 OCLNQ16625 522 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 PLEKHG6Q3KR16 790 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 HSP90AB2PQ58FF8 381 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 SMC5Q8IY18 1101 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 RPUSD2Q8IZ73 545 aaKnown RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 ZNF511Q8NB15 262 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 BAP1Q92560 729 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 OSBPL2Q9H1P3 480 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 IFT57Q9NWB7 429 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 MAGEC2Q9UBF1 373 aaPredicted RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 MAGI1Q96QZ7 1491 aaPredicted RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 TDRD9Q8NDG6 1382 aaKnown RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 ATP5J2-PTCD1G3V325 749 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 F12P00748 615 aaPredicted RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 SH3BP2P78314 561 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 SKOR1P84550 965 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 FAM50AQ14320 339 aaKnown RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 LINC01559Q495D7 138 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 NBPF14Q5TI25 921 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 FILIP1Q7Z7B0 1213 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 SGSM3Q96HU1 749 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 CCDC136Q96JN2 1154 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 BRINP2Q9C0B6 783 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 PCDH12Q9NPG4 1184 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 CXXC1Q9P0U4 656 aaPredicted RBP7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 PARP2Q9UGN5 583 aa7.01□□□□□ -1.29
VPS35P1-201ENST00000563400 CUX1P39880 1505 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 U2SURPO15042 1029 aaKnown RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 PER1O15534 1290 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 LGR5O75473 907 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 HSD3B2P26439 372 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 VARSP26640 1264 aaKnown RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 CLDN10P78369 228 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 XPCQ01831 940 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 AGERQ15109 404 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 FOXD4L6Q3SYB3 417 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 RNF187Q5TA31 235 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 SPTY2D1Q68D10 685 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 FOXD4L3Q6VB84 417 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 CAPN12Q6ZSI9 719 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 OGFOD1Q8N543 542 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 ZCRB1Q8TBF4 217 aaKnown RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 MAP10Q9P2G4 905 aa7□□□□□ -1.29
VPS35P1-201ENST00000563400 EPB41L3Q9Y2J2 1087 aaPredicted RBP7□□□□□ -1.29
VPS35P1-201ENST00000563400 BIVM-ERCC5R4GMW8 1640 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 RALBP1Q15311 655 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 CTC1Q2NKJ3 1217 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 TMC7Q7Z402 723 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms