RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 SCN11AQ9UI33 1791 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 USP42Q9H9J4 1324 aaKnown RBP10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 LMNB1P20700 586 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 TM4SF1P30408 202 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 IFNL2Q8IZJ0 200 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 EYA1Q99502 592 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 CREBZFQ9NS37 354 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 EMILIN1Q9Y6C2 1016 aa10.9□□□□□ -0.66
HERPUD1-206ENST00000563343 SCN4AP35499 1836 aa10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 POLRMTO00411 1230 aaKnown RBP10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 TNRC18O15417 2968 aaPredicted RBP10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 MKRN1Q9UHC7 482 aaKnown RBP10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 ADAMTSL1Q8N6G6 1762 aa10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 ARFGEF2Q9Y6D5 1785 aa10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 CNTNAP1P78357 1384 aa10.89□□□□□ -0.67
HERPUD1-206ENST00000563343 NFKBIEO00221 500 aa10.88□□□□□ -0.67
HERPUD1-206ENST00000563343 NEUROD1Q13562 356 aa10.88□□□□□ -0.67
HERPUD1-206ENST00000563343 FAM161AQ3B820 660 aa10.88□□□□□ -0.67
HERPUD1-206ENST00000563343 RBM42Q9BTD8 480 aaKnown RBP10.88□□□□□ -0.67
HERPUD1-206ENST00000563343 THSD7BQ9C0I4 1608 aa10.87□□□□□ -0.67
HERPUD1-206ENST00000563343 ERVV-2B6SEH9 535 aa10.87□□□□□ -0.67
HERPUD1-206ENST00000563343 WASHC2AQ641Q2 1341 aa10.86□□□□□ -0.67
HERPUD1-206ENST00000563343 ST20-MTHFSA0A0A6YYL1 179 aa10.86□□□□□ -0.67
HERPUD1-206ENST00000563343 POTEIP0CG38 1075 aa10.86□□□□□ -0.67
HERPUD1-206ENST00000563343 POTEJP0CG39 1038 aa10.86□□□□□ -0.67
HERPUD1-206ENST00000563343 CRKLP46109 303 aaKnown RBP10.86□□□□□ -0.67
HERPUD1-206ENST00000563343 PASKQ96RG2 1323 aa10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 CTCFP49711 727 aaPredicted RBP10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 CHADLQ6NUI6 762 aa10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 SPINK5Q9NQ38 1064 aaPredicted RBP10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 WBP1LQ9NX94 342 aa10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 CARMIL3Q8ND23 1372 aa10.85□□□□□ -0.67
HERPUD1-206ENST00000563343 SLX4Q8IY92 1834 aa10.84□□□□□ -0.67
HERPUD1-206ENST00000563343 INTS5Q6P9B9 1019 aaKnown RBP10.84□□□□□ -0.67
HERPUD1-206ENST00000563343 ABHD8Q96I13 439 aa10.84□□□□□ -0.67
HERPUD1-206ENST00000563343 CARD14Q9BXL6 1004 aa10.84□□□□□ -0.67
HERPUD1-206ENST00000563343 UBR2Q8IWV8 1755 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 VEGFBP49765 207 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 RGS19P49795 217 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 LBX1P52954 281 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 USPL1Q5W0Q7 1092 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 TTLL6Q8N841 843 aa10.83□□□□□ -0.68
HERPUD1-206ENST00000563343 SCN7AQ01118 1682 aa10.82□□□□□ -0.68
HERPUD1-206ENST00000563343 HSPA8P11142 646 aaKnown RBP10.82□□□□□ -0.68
HERPUD1-206ENST00000563343 NFIXQ14938 502 aa10.82□□□□□ -0.68
HERPUD1-206ENST00000563343 SOS1Q07889 1333 aaPredicted RBP10.82□□□□□ -0.68
HERPUD1-206ENST00000563343 PTCD1O75127 700 aaKnown RBP10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 EIF4A2Q14240 407 aaKnown RBP10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 DPY19L2Q6NUT2 758 aa10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 BCL2L12Q9HB09 334 aa10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 POLKQ9UBT6 870 aa10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 TRPM7Q96QT4 1865 aa10.81□□□□□ -0.68
HERPUD1-206ENST00000563343 PPM1GO15355 546 aaPredicted RBP10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 SLC24A1O60721 1099 aa10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 DDNO94850 711 aaPredicted RBP10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 ITGBL1O95965 494 aaPredicted RBP10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 HSP90AB1P08238 724 aaKnown RBP10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 LTBP3Q9NS15 1303 aa10.8□□□□□ -0.68
HERPUD1-206ENST00000563343 LTBP1Q14766 1721 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 SERPINB2P05120 415 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 CABP4P57796 275 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 MLLT1Q03111 559 aaPredicted RBP10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 ERFEQ4G0M1 354 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 C2CD5Q86YS7 1000 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 AIDAQ96BJ3 306 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 NARFQ9UHQ1 456 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 MRC1P22897 1456 aa10.79□□□□□ -0.68
HERPUD1-206ENST00000563343 COL15A1P39059 1388 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 BCORQ6W2J9 1755 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 RASSF10A6NK89 507 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 TMEM88BA6NKF7 163 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 ZPR1O75312 459 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 ATXN8OSP0DMR3 200 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 LDHDQ86WU2 507 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 DNAJC10Q8IXB1 793 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 NFATC2IPQ8NCF5 419 aa10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
HERPUD1-206ENST00000563343 H0YIN7 160 aa10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 C21orf2O43822 256 aa10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 CYP19A1P11511 503 aaPredicted RBP10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 ZNF530Q6P9A1 599 aaPredicted RBP10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 L3MBTL3Q96JM7 780 aaPredicted RBP10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 TAF1DQ9H5J8 278 aaPredicted RBP10.77□□□□□ -0.69
HERPUD1-206ENST00000563343 CASP8AP2Q9UKL3 1982 aa10.76□□□□□ -0.69
HERPUD1-206ENST00000563343 PLEKHO1Q53GL0 409 aaPredicted RBP10.76□□□□□ -0.69
HERPUD1-206ENST00000563343 PDE4DIPQ5VU43 2346 aa10.75□□□□□ -0.69
HERPUD1-206ENST00000563343 MTHFSP49914 203 aa10.75□□□□□ -0.69
HERPUD1-206ENST00000563343 ZBTB1Q9Y2K1 713 aa10.75□□□□□ -0.69
HERPUD1-206ENST00000563343 SIPA1L3O60292 1781 aaPredicted RBP10.75□□□□□ -0.69
HERPUD1-206ENST00000563343 CCDC85CA6NKD9 419 aa10.74□□□□□ -0.69
HERPUD1-206ENST00000563343 DEFB115Q30KQ5 88 aa10.74□□□□□ -0.69
HERPUD1-206ENST00000563343 AMOTQ4VCS5 1084 aa10.74□□□□□ -0.69
HERPUD1-206ENST00000563343 TAOK3Q9H2K8 898 aa10.74□□□□□ -0.69
HERPUD1-206ENST00000563343 WDR33Q9C0J8 1336 aaKnown RBP10.74□□□□□ -0.69
HERPUD1-206ENST00000563343 IQCA1LA6NCM1 817 aa10.73□□□□□ -0.69
HERPUD1-206ENST00000563343 AEBP1Q8IUX7 1158 aa10.73□□□□□ -0.69
HERPUD1-206ENST00000563343 ZNF622Q969S3 477 aaKnown RBP eCLIP10.73□□□□□ -0.693e-12■□□□□ 10.2
HERPUD1-206ENST00000563343 BRIP1Q9BX63 1249 aa10.73□□□□□ -0.69
HERPUD1-206ENST00000563343 PDZRN3Q9UPQ7 1066 aa10.73□□□□□ -0.69
HERPUD1-206ENST00000563343 MAP2K1Q02750 393 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms