RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 PIM2Q9P1W9 311 aa21.18■□□□□ 0.98
CLK3-211ENST00000563297 NARFQ9UHQ1 456 aa21.18■□□□□ 0.98
CLK3-211ENST00000563297 TTC5Q8N0Z6 440 aa21.16■□□□□ 0.98
CLK3-211ENST00000563297 PHACTR3Q96KR7 559 aa21.16■□□□□ 0.98
CLK3-211ENST00000563297 TEFQ10587 303 aa21.15■□□□□ 0.98
CLK3-211ENST00000563297 BCL2L12Q9HB09 334 aa21.15■□□□□ 0.98
CLK3-211ENST00000563297 COL15A1P39059 1388 aa21.14■□□□□ 0.98
CLK3-211ENST00000563297 STARD3NLO95772 234 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 CANXP27824 592 aaKnown RBP21.14■□□□□ 0.97
CLK3-211ENST00000563297 CHRNA5P30532 468 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 NFIXQ14938 502 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 ZNF790Q6PG37 636 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 ZNF496Q96IT1 587 aaPredicted RBP21.14■□□□□ 0.97
CLK3-211ENST00000563297 CFAP53Q96M91 514 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 UBR2Q8IWV8 1755 aa21.14■□□□□ 0.97
CLK3-211ENST00000563297 KIF3CO14782 793 aa21.13■□□□□ 0.97
CLK3-211ENST00000563297 PRKAR2BP31323 418 aa21.13■□□□□ 0.97
CLK3-211ENST00000563297 DALRD3Q5D0E6 543 aaKnown RBP21.13■□□□□ 0.97
CLK3-211ENST00000563297 RSPH6AQ9H0K4 717 aa21.13■□□□□ 0.97
CLK3-211ENST00000563297 ARFGEF1Q9Y6D6 1849 aa21.13■□□□□ 0.97
CLK3-211ENST00000563297 EIF5P55010 431 aaKnown RBP21.12■□□□□ 0.97
CLK3-211ENST00000563297 TEX13AQ9BXU3 409 aaPredicted RBP21.12■□□□□ 0.97
CLK3-211ENST00000563297 PPP2R1AP30153 589 aa21.11■□□□□ 0.97
CLK3-211ENST00000563297 NUDCQ9Y266 331 aa21.11■□□□□ 0.97
CLK3-211ENST00000563297 CEP350Q5VT06 3117 aa21.11■□□□□ 0.97
CLK3-211ENST00000563297 AFDNP55196 1824 aaKnown RBP21.11■□□□□ 0.97
CLK3-211ENST00000563297 HEG1Q9ULI3 1381 aa21.1■□□□□ 0.97
CLK3-211ENST00000563297 SERPINB2P05120 415 aa21.1■□□□□ 0.97
CLK3-211ENST00000563297 SIPA1L3O60292 1781 aaPredicted RBP21.1■□□□□ 0.97
CLK3-211ENST00000563297 CEMIPQ8WUJ3 1361 aa21.1■□□□□ 0.97
CLK3-211ENST00000563297 C9orf131Q5VYM1 1079 aa21.09■□□□□ 0.97
CLK3-211ENST00000563297 A0A087WZG4 1122 aa21.08■□□□□ 0.97
CLK3-211ENST00000563297 KCNQ3O43525 872 aa21.08■□□□□ 0.97
CLK3-211ENST00000563297 FMNL2Q96PY5 1086 aa21.08■□□□□ 0.97
CLK3-211ENST00000563297 BTBD11A6QL63 1104 aa21.07■□□□□ 0.96
CLK3-211ENST00000563297 U2AF1L5P0DN76 240 aaPredicted RBP21.07■□□□□ 0.96
CLK3-211ENST00000563297 HSPA6P17066 643 aa21.07■□□□□ 0.96
CLK3-211ENST00000563297 U2AF1Q01081 240 aaKnown RBP eCLIP21.07■□□□□ 0.96
CLK3-211ENST00000563297 NRXN2Q9P2S2 1712 aa21.07■□□□□ 0.96
CLK3-211ENST00000563297 BICDL1Q6ZP65 573 aa21.06■□□□□ 0.96
CLK3-211ENST00000563297 A1BGP04217 495 aa21.05■□□□□ 0.96
CLK3-211ENST00000563297 IL6STP40189 918 aaPredicted RBP21.05■□□□□ 0.96
CLK3-211ENST00000563297 TBC1D2BQ9UPU7 963 aa21.05■□□□□ 0.96
CLK3-211ENST00000563297 TBC1D9BQ66K14 1250 aa21.04■□□□□ 0.96
CLK3-211ENST00000563297 NMRK2Q9NPI5 230 aa21.04■□□□□ 0.96
CLK3-211ENST00000563297 ZNF330Q9Y3S2 320 aaPredicted RBP21.04■□□□□ 0.96
CLK3-211ENST00000563297 SBF1O95248 1867 aa21.03■□□□□ 0.96
CLK3-211ENST00000563297 MCM10Q7L590 875 aa21.03■□□□□ 0.96
CLK3-211ENST00000563297 USP16Q9Y5T5 823 aa21.03■□□□□ 0.96
CLK3-211ENST00000563297 TOMM70O94826 608 aa21.02■□□□□ 0.96
CLK3-211ENST00000563297 RTF1Q92541 710 aaKnown RBP21.02■□□□□ 0.96
CLK3-211ENST00000563297 RNF181Q9P0P0 153 aa21.02■□□□□ 0.96
CLK3-211ENST00000563297 C2CD5Q86YS7 1000 aa21.01■□□□□ 0.95
CLK3-211ENST00000563297 TTLL6Q8N841 843 aa21.01■□□□□ 0.95
CLK3-211ENST00000563297 CARMIL3Q8ND23 1372 aa21■□□□□ 0.95
CLK3-211ENST00000563297 H0YIN7 160 aa21■□□□□ 0.95
CLK3-211ENST00000563297 DCTN1Q14203 1278 aa21■□□□□ 0.95
CLK3-211ENST00000563297 PRAMEF22A3QJZ6 481 aa20.99■□□□□ 0.95
CLK3-211ENST00000563297 HTATSF1O43719 755 aaKnown RBP20.99■□□□□ 0.95
CLK3-211ENST00000563297 CAMTA2O94983 1202 aa20.99■□□□□ 0.95
CLK3-211ENST00000563297 NPM2Q86SE8 214 aaKnown RBP20.99■□□□□ 0.95
CLK3-211ENST00000563297 PRR5LQ6MZQ0 368 aa20.98■□□□□ 0.95
CLK3-211ENST00000563297 BRIP1Q9BX63 1249 aa20.98■□□□□ 0.95
CLK3-211ENST00000563297 DLEC1Q9Y238 1755 aa20.97■□□□□ 0.95
CLK3-211ENST00000563297 SNRPA1P09661 255 aaKnown RBP20.97■□□□□ 0.95
CLK3-211ENST00000563297 PIP4K2AP48426 406 aaPredicted RBP20.97■□□□□ 0.95
CLK3-211ENST00000563297 RASSF7Q02833 373 aa20.97■□□□□ 0.95
CLK3-211ENST00000563297 DZIP3Q86Y13 1208 aaKnown RBP20.97■□□□□ 0.95
CLK3-211ENST00000563297 CCDC24Q8N4L8 307 aa20.97■□□□□ 0.95
CLK3-211ENST00000563297 PDE6BP35913 854 aa20.96■□□□□ 0.95
CLK3-211ENST00000563297 PRELPP51888 382 aa20.96■□□□□ 0.95
CLK3-211ENST00000563297 TAF7Q15545 349 aaPredicted RBP20.96■□□□□ 0.95
CLK3-211ENST00000563297 SETDB2Q96T68 719 aa20.96■□□□□ 0.95
CLK3-211ENST00000563297 KDM2BQ8NHM5 1336 aa20.96■□□□□ 0.95
CLK3-211ENST00000563297 ANKRD31Q8N7Z5 1873 aa20.95■□□□□ 0.94
CLK3-211ENST00000563297 ZNF622Q969S3 477 aaKnown RBP eCLIP20.95■□□□□ 0.943e-6■□□□□ 10
CLK3-211ENST00000563297 RRAGCQ9HB90 399 aa20.95■□□□□ 0.94
CLK3-211ENST00000563297 PDZRN3Q9UPQ7 1066 aa20.95■□□□□ 0.94
CLK3-211ENST00000563297 SCN7AQ01118 1682 aa20.94■□□□□ 0.94
CLK3-211ENST00000563297 LMNB1P20700 586 aa20.94■□□□□ 0.94
CLK3-211ENST00000563297 CCDC88AQ3V6T2 1871 aa20.93■□□□□ 0.94
CLK3-211ENST00000563297 CLEC4GQ6UXB4 293 aa20.93■□□□□ 0.94
CLK3-211ENST00000563297 RBM46Q8TBY0 533 aaKnown RBP20.93■□□□□ 0.94
CLK3-211ENST00000563297 MIS18AQ9NYP9 233 aa20.93■□□□□ 0.94
CLK3-211ENST00000563297 NBPF26B4DH59 902 aa20.92■□□□□ 0.94
CLK3-211ENST00000563297 NFKBIEO00221 500 aa20.92■□□□□ 0.94
CLK3-211ENST00000563297 APLP1P51693 650 aa20.92■□□□□ 0.94
CLK3-211ENST00000563297 NBPF10Q6P3W6 841 aaKnown RBP20.92■□□□□ 0.94
CLK3-211ENST00000563297 C16orf71Q8IYS4 520 aaPredicted RBP20.92■□□□□ 0.94
CLK3-211ENST00000563297 NBPF15Q8N660 670 aa20.92■□□□□ 0.94
CLK3-211ENST00000563297 CNBD1Q8NA66 436 aa20.91■□□□□ 0.94
CLK3-211ENST00000563297 PLEKHF1Q96S99 279 aa20.91■□□□□ 0.94
CLK3-211ENST00000563297 ZC3H4Q9UPT8 1303 aaKnown RBP20.9■□□□□ 0.94
CLK3-211ENST00000563297 C21orf2O43822 256 aa20.9■□□□□ 0.94
CLK3-211ENST00000563297 NEFMP07197 916 aa20.9■□□□□ 0.94
CLK3-211ENST00000563297 DLG5Q8TDM6 1919 aa20.89■□□□□ 0.93
CLK3-211ENST00000563297 GLTPD2A6NH11 291 aa20.89■□□□□ 0.93
CLK3-211ENST00000563297 NPHP1O15259 732 aa20.89■□□□□ 0.93
CLK3-211ENST00000563297 ZNF219Q9P2Y4 722 aaPredicted RBP20.89■□□□□ 0.93
CLK3-211ENST00000563297 BCORQ6W2J9 1755 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms