RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	PIM2	Q9P1W9	311 aa		11.6	□□□□□ -0.55
CKLF-208	ENST00000563092	KCP	Q6ZWJ8	1503 aa		11.6	□□□□□ -0.55
CKLF-208	ENST00000563092	ADAMTS7	Q9UKP4	1686 aa		11.59	□□□□□ -0.55
CKLF-208	ENST00000563092	PARP3	Q9Y6F1	533 aa		11.59	□□□□□ -0.55
CKLF-208	ENST00000563092	KDM2B	Q8NHM5	1336 aa		11.59	□□□□□ -0.55
CKLF-208	ENST00000563092	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.59	□□□□□ -0.55
CKLF-208	ENST00000563092	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.59	□□□□□ -0.55
CKLF-208	ENST00000563092	MYH14	Q7Z406	1995 aa	Known RBP	11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	RFC4	P35249	363 aa		11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	CLCN6	P51797	869 aa		11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	DDR1	Q08345	913 aa		11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	EIF4A2	Q14240	407 aa	Known RBP	11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	DALRD3	Q5D0E6	543 aa	Known RBP	11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	CREBZF	Q9NS37	354 aa		11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	USP42	Q9H9J4	1324 aa	Known RBP	11.58	□□□□□ -0.56
CKLF-208	ENST00000563092	PPM1G	O15355	546 aa	Predicted RBP	11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	HSP90AB1	P08238	724 aa	Known RBP	11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	POTEI	P0CG38	1075 aa		11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	TM4SF1	P30408	202 aa		11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	PRELP	P51888	382 aa		11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	FKBP8	Q14318	412 aa		11.57	□□□□□ -0.56
CKLF-208	ENST00000563092	SPDYE4	A6NLX3	237 aa		11.56	□□□□□ -0.56
CKLF-208	ENST00000563092	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.56	□□□□□ -0.56
CKLF-208	ENST00000563092	SMC1B	Q8NDV3	1235 aa		11.56	□□□□□ -0.56
CKLF-208	ENST00000563092	RNF181	Q9P0P0	153 aa		11.56	□□□□□ -0.56
CKLF-208	ENST00000563092	SBF1	O95248	1867 aa		11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	TJP1	Q07157	1748 aa		11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	POLRMT	O00411	1230 aa	Known RBP	11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	CRKL	P46109	303 aa	Known RBP	11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	ZNF579	Q8NAF0	562 aa	Known RBP	11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	RRAGC	Q9HB90	399 aa		11.55	□□□□□ -0.56
CKLF-208	ENST00000563092	CHRNA5	P30532	468 aa		11.54	□□□□□ -0.56
CKLF-208	ENST00000563092	INTS5	Q6P9B9	1019 aa	Known RBP	11.54	□□□□□ -0.56
CKLF-208	ENST00000563092	TNS4	Q8IZW8	715 aa		11.54	□□□□□ -0.56
CKLF-208	ENST00000563092	SRP68	Q9UHB9	627 aa	Known RBP	11.54	□□□□□ -0.56
CKLF-208	ENST00000563092	NRXN2	Q9P2S2	1712 aa		11.54	□□□□□ -0.56
CKLF-208	ENST00000563092	AMOT	Q4VCS5	1084 aa		11.53	□□□□□ -0.56
CKLF-208	ENST00000563092	GLTPD2	A6NH11	291 aa		11.52	□□□□□ -0.57
CKLF-208	ENST00000563092	CABP4	P57796	275 aa		11.52	□□□□□ -0.57
CKLF-208	ENST00000563092	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.52	□□□□□ -0.57
CKLF-208	ENST00000563092	POTEC	B2RU33	542 aa		11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	PTCD1	O75127	700 aa	Known RBP	11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	VEGFA	P15692	232 aa	Predicted RBP	11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	LMNB1	P20700	586 aa		11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	NFATC2IP	Q8NCF5	419 aa		11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	SOS1	Q07889	1333 aa	Predicted RBP	11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	DLEC1	Q9Y238	1755 aa		11.51	□□□□□ -0.57
CKLF-208	ENST00000563092	HSPA1A	P0DMV8	641 aa	Known RBP	11.5	□□□□□ -0.57
CKLF-208	ENST00000563092	HSPA1B	P0DMV9	641 aa	Known RBP	11.5	□□□□□ -0.57
CKLF-208	ENST00000563092	MTHFS	P49914	203 aa		11.5	□□□□□ -0.57
CKLF-208	ENST00000563092	RASSF7	Q02833	373 aa		11.5	□□□□□ -0.57
CKLF-208	ENST00000563092	BCL2L12	Q9HB09	334 aa		11.49	□□□□□ -0.57
CKLF-208	ENST00000563092	MRC1	P22897	1456 aa		11.49	□□□□□ -0.57
CKLF-208	ENST00000563092	NFKBIE	O00221	500 aa		11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	CYP19A1	P11511	503 aa	Predicted RBP	11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	NFIX	Q14938	502 aa		11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	USPL1	Q5W0Q7	1092 aa		11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	AEBP1	Q8IUX7	1158 aa		11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	NARF	Q9UHQ1	456 aa		11.48	□□□□□ -0.57
CKLF-208	ENST00000563092	AFDN	P55196	1824 aa	Known RBP	11.47	□□□□□ -0.57
CKLF-208	ENST00000563092	SCN11A	Q9UI33	1791 aa		11.47	□□□□□ -0.57
CKLF-208	ENST00000563092	DNAJC10	Q8IXB1	793 aa		11.47	□□□□□ -0.57
CKLF-208	ENST00000563092	DCBLD2	Q96PD2	775 aa		11.47	□□□□□ -0.57
CKLF-208	ENST00000563092	TIAM2	Q8IVF5	1701 aa		11.46	□□□□□ -0.57
CKLF-208	ENST00000563092	ZPR1	O75312	459 aa		11.46	□□□□□ -0.57
CKLF-208	ENST00000563092	TNNT2	P45379	298 aa	Predicted RBP	11.46	□□□□□ -0.57
CKLF-208	ENST00000563092	C1orf141	Q5JVX7	400 aa		11.46	□□□□□ -0.57
CKLF-208	ENST00000563092	TTLL6	Q8N841	843 aa		11.46	□□□□□ -0.57
CKLF-208	ENST00000563092	COL15A1	P39059	1388 aa		11.45	□□□□□ -0.58
CKLF-208	ENST00000563092	CARMIL3	Q8ND23	1372 aa		11.45	□□□□□ -0.58
CKLF-208	ENST00000563092	VSIG10	Q8N0Z9	540 aa		11.45	□□□□□ -0.58
CKLF-208	ENST00000563092	SLC52A2	Q9HAB3	445 aa		11.45	□□□□□ -0.58
CKLF-208	ENST00000563092	SERPINB2	P05120	415 aa		11.44	□□□□□ -0.58
CKLF-208	ENST00000563092	IL13	P35225	146 aa		11.44	□□□□□ -0.58
CKLF-208	ENST00000563092	AKAP4	Q5JQC9	854 aa		11.44	□□□□□ -0.58
CKLF-208	ENST00000563092	LTBP3	Q9NS15	1303 aa		11.43	□□□□□ -0.58
CKLF-208	ENST00000563092	SULT6B1	Q6IMI4	303 aa		11.43	□□□□□ -0.58
CKLF-208	ENST00000563092	C2CD5	Q86YS7	1000 aa		11.43	□□□□□ -0.58
CKLF-208	ENST00000563092	ZBTB1	Q9Y2K1	713 aa		11.43	□□□□□ -0.58
CKLF-208	ENST00000563092	UBR2	Q8IWV8	1755 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092		H0YIN7	160 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	EIF5	P55010	431 aa	Known RBP	11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	LGR6	Q9HBX8	967 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	TIMELESS	Q9UNS1	1208 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	PDZRN3	Q9UPQ7	1066 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	FER1L6	Q2WGJ9	1857 aa		11.42	□□□□□ -0.58
CKLF-208	ENST00000563092	PASK	Q96RG2	1323 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	ANKRD31	Q8N7Z5	1873 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	RNMT	O43148	476 aa	Known RBP	11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	DPY19L2	Q6NUT2	758 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	BRIP1	Q9BX63	1249 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	PANK3	Q9H999	370 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	PRDM10	Q9NQV6	1147 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	CNTNAP1	P78357	1384 aa		11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	DICER1	Q9UPY3	1922 aa	Known RBP	11.41	□□□□□ -0.58
CKLF-208	ENST00000563092	GALR2	O43603	387 aa	Predicted RBP	11.4	□□□□□ -0.58
CKLF-208	ENST00000563092	SLC39A6	Q13433	755 aa		11.4	□□□□□ -0.58
CKLF-208	ENST00000563092	COL11A2	P13942	1736 aa	Predicted RBP	11.4	□□□□□ -0.58
CKLF-208	ENST00000563092	CCDC88A	Q3V6T2	1871 aa		11.4	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms