RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 NECTIN2Q92692 538 aa19.72■□□□□ 0.75
TPM1-228ENST00000560975 COG3Q96JB2 828 aa19.72■□□□□ 0.75
TPM1-228ENST00000560975 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.72■□□□□ 0.75
TPM1-228ENST00000560975 ATP6V1DQ9Y5K8 247 aa19.72■□□□□ 0.75
TPM1-228ENST00000560975 LIMCH1Q9UPQ0 1083 aa19.71■□□□□ 0.75
TPM1-228ENST00000560975 SSH2Q76I76 1423 aa19.71■□□□□ 0.75
TPM1-228ENST00000560975 GJB2P29033 226 aa19.71■□□□□ 0.75
TPM1-228ENST00000560975 TNNT1P13805 278 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 CTNNA3Q9UI47 895 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 NCKAP5LQ9HCH0 1330 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 ASXL2Q76L83 1435 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 CKAP2LQ8IYA6 745 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 DDX54Q8TDD1 881 aaKnown RBP19.7■□□□□ 0.74
TPM1-228ENST00000560975 ZNF592Q92610 1267 aa19.7■□□□□ 0.74
TPM1-228ENST00000560975 ZBTB22O15209 634 aa19.69■□□□□ 0.74
TPM1-228ENST00000560975 TTC14Q96N46 770 aa19.69■□□□□ 0.74
TPM1-228ENST00000560975 SPG7Q9UQ90 795 aa19.69■□□□□ 0.74
TPM1-228ENST00000560975 FAM200AQ8TCP9 573 aa19.69■□□□□ 0.74
TPM1-228ENST00000560975 MTMR6Q9Y217 621 aa19.69■□□□□ 0.74
TPM1-228ENST00000560975 CDK12Q9NYV4 1490 aaPredicted RBP19.68■□□□□ 0.74
TPM1-228ENST00000560975 CASTP20810 708 aaKnown RBP19.68■□□□□ 0.74
TPM1-228ENST00000560975 FAM173BQ6P4H8 233 aa19.68■□□□□ 0.74
TPM1-228ENST00000560975 FERMT3Q86UX7 667 aa19.68■□□□□ 0.74
TPM1-228ENST00000560975 LRRFIP2Q9Y608 721 aaKnown RBP19.68■□□□□ 0.74
TPM1-228ENST00000560975 HECW2Q9P2P5 1572 aa19.68■□□□□ 0.74
TPM1-228ENST00000560975 GTF2E1P29083 439 aaPredicted RBP19.68■□□□□ 0.74
TPM1-228ENST00000560975 FRMPD1Q5SYB0 1578 aa19.68■□□□□ 0.74
TPM1-228ENST00000560975 STAP2Q9UGK3 403 aa19.68■□□□□ 0.74
TPM1-228ENST00000560975 ATP8B2P98198 1209 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 TYRO3Q06418 890 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 TRIM5Q9C035 493 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 MRVI1Q9Y6F6 885 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 RAD50Q92878 1312 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 SMTNL1A8MU46 457 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 LIG1P18858 919 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 TSPYL4Q9UJ04 414 aa19.67■□□□□ 0.74
TPM1-228ENST00000560975 EIF4A2Q14240 407 aaKnown RBP19.66■□□□□ 0.74
TPM1-228ENST00000560975 MAP3K11Q16584 847 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 CWC27Q6UX04 472 aaKnown RBP19.66■□□□□ 0.74
TPM1-228ENST00000560975 IL17RAQ96F46 866 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 CLTCQ00610 1675 aaKnown RBP19.66■□□□□ 0.74
TPM1-228ENST00000560975 PIK3C2BO00750 1634 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 FOXO3O43524 673 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 TPD52L1Q16890 204 aaPredicted RBP19.66■□□□□ 0.74
TPM1-228ENST00000560975 CCDC112Q8NEF3 446 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 NUP62CLQ9H1M0 184 aa19.66■□□□□ 0.74
TPM1-228ENST00000560975 SOX12O15370 315 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 SGSM2O43147 1006 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 ANO6Q4KMQ2 910 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 NECAB1Q8N987 351 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.65■□□□□ 0.74
TPM1-228ENST00000560975 V9GYY5 206 aaPredicted RBP19.65■□□□□ 0.74
TPM1-228ENST00000560975 TTC6Q86TZ1 520 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 CBX8Q9HC52 389 aa19.65■□□□□ 0.74
TPM1-228ENST00000560975 ZSCAN25Q6NSZ9 544 aa19.64■□□□□ 0.73
TPM1-228ENST00000560975 RTF1Q92541 710 aaKnown RBP19.64■□□□□ 0.73
TPM1-228ENST00000560975 LSG1Q9H089 658 aaKnown RBP19.64■□□□□ 0.73
TPM1-228ENST00000560975 DDX41Q9UJV9 622 aaKnown RBP19.64■□□□□ 0.73
TPM1-228ENST00000560975 GNAI3P08754 354 aa19.64■□□□□ 0.73
TPM1-228ENST00000560975 STK31Q9BXU1 1019 aa19.63■□□□□ 0.73
TPM1-228ENST00000560975 SLFN14P0C7P3 912 aa19.63■□□□□ 0.73
TPM1-228ENST00000560975 HYPKQ9NX55 129 aa19.63■□□□□ 0.73
TPM1-228ENST00000560975 STAG3Q9UJ98 1225 aa19.63■□□□□ 0.73
TPM1-228ENST00000560975 JAKMIP1Q96N16 626 aaKnown RBP19.62■□□□□ 0.73
TPM1-228ENST00000560975 TNMDQ9H2S6 317 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 TMEM51Q9NW97 253 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 SLC52A1Q9NWF4 448 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 GABPB1Q06547 395 aaPredicted RBP19.62■□□□□ 0.73
TPM1-228ENST00000560975 DACT1Q9NYF0 836 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 ATP7BP35670 1465 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 MYO5BQ9ULV0 1848 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 SURF6O75683 361 aaKnown RBP19.62■□□□□ 0.73
TPM1-228ENST00000560975 ZNF75DP51815 510 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 FLIIQ13045 1269 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 ADCK5Q3MIX3 580 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 PDRG1Q9NUG6 133 aa19.62■□□□□ 0.73
TPM1-228ENST00000560975 TUBGCP6Q96RT7 1819 aa19.61■□□□□ 0.73
TPM1-228ENST00000560975 KIF18AQ8NI77 898 aa19.61■□□□□ 0.73
TPM1-228ENST00000560975 CACTINQ8WUQ7 758 aaKnown RBP19.61■□□□□ 0.73
TPM1-228ENST00000560975 EDC4Q6P2E9 1401 aaKnown RBP19.61■□□□□ 0.73
TPM1-228ENST00000560975 AATKQ6ZMQ8 1374 aa19.61■□□□□ 0.73
TPM1-228ENST00000560975 RAPGEF3O95398 923 aa19.61■□□□□ 0.73
TPM1-228ENST00000560975 TAF3Q5VWG9 929 aa19.61■□□□□ 0.73
TPM1-228ENST00000560975 TFIP11Q9UBB9 837 aaKnown RBP19.61■□□□□ 0.73
TPM1-228ENST00000560975 PRPF40BQ6NWY9 871 aaKnown RBP19.6■□□□□ 0.73
TPM1-228ENST00000560975 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.6■□□□□ 0.73
TPM1-228ENST00000560975 GOLGA6L4A6NEF3 574 aa19.6■□□□□ 0.73
TPM1-228ENST00000560975 VGLL3A8MV65 326 aa19.6■□□□□ 0.73
TPM1-228ENST00000560975 LARP1BQ659C4 914 aaKnown RBP19.6■□□□□ 0.73
TPM1-228ENST00000560975 CLIP2Q9UDT6 1046 aa19.6■□□□□ 0.73
TPM1-228ENST00000560975 KRT85P78386 507 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 SYCP1Q15431 976 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 CCDC144BQ3MJ40 725 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 CDC37L1Q7L3B6 337 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 CCDC144CPQ8IYA2 1237 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 PI4K2BQ8TCG2 481 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 ST3GAL1Q11201 340 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 HSP90AB2PQ58FF8 381 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 CEP135Q66GS9 1140 aa19.59■□□□□ 0.73
TPM1-228ENST00000560975 PAXBP1Q9Y5B6 917 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms