RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 HMOX1P09601 288 aa18.83■□□□□ 0.6
LDLR-213ENST00000560502 CYP19A1P11511 503 aaPredicted RBP18.83■□□□□ 0.6
LDLR-213ENST00000560502 SIPA1L3O60292 1781 aaPredicted RBP18.83■□□□□ 0.6
LDLR-213ENST00000560502 SLC39A6Q13433 755 aa18.82■□□□□ 0.6
LDLR-213ENST00000560502 COL15A1P39059 1388 aa18.81■□□□□ 0.6
LDLR-213ENST00000560502 MTHFSDQ2M296 383 aaKnown RBP18.81■□□□□ 0.6
LDLR-213ENST00000560502 DALRD3Q5D0E6 543 aaKnown RBP18.81■□□□□ 0.6
LDLR-213ENST00000560502 C9orf131Q5VYM1 1079 aa18.81■□□□□ 0.6
LDLR-213ENST00000560502 USPL1Q5W0Q7 1092 aa18.81■□□□□ 0.6
LDLR-213ENST00000560502 NMRK2Q9NPI5 230 aa18.81■□□□□ 0.6
LDLR-213ENST00000560502 TNRC6CQ9HCJ0 1690 aaKnown RBP18.8■□□□□ 0.6
LDLR-213ENST00000560502 TOMM70O94826 608 aa18.8■□□□□ 0.6
LDLR-213ENST00000560502 CHRNA5P30532 468 aa18.8■□□□□ 0.6
LDLR-213ENST00000560502 IFFO2Q5TF58 517 aa18.8■□□□□ 0.6
LDLR-213ENST00000560502 NARFQ9UHQ1 456 aa18.8■□□□□ 0.6
LDLR-213ENST00000560502 DIAPH1O60610 1272 aaKnown RBP18.79■□□□□ 0.6
LDLR-213ENST00000560502 ZPR1O75312 459 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 VSIG10Q8N0Z9 540 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 ZBTB1Q9Y2K1 713 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 WDR90Q96KV7 1748 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 NPC1L1Q9UHC9 1359 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 SCN7AQ01118 1682 aa18.79■□□□□ 0.6
LDLR-213ENST00000560502 NFIXQ14938 502 aa18.78■□□□□ 0.6
LDLR-213ENST00000560502 BCL2L12Q9HB09 334 aa18.78■□□□□ 0.6
LDLR-213ENST00000560502 CCER2I3L3R5 266 aa18.77■□□□□ 0.6
LDLR-213ENST00000560502 APLP1P51693 650 aa18.77■□□□□ 0.6
LDLR-213ENST00000560502 ANKRD31Q8N7Z5 1873 aa18.76■□□□□ 0.59
LDLR-213ENST00000560502 CC2D1BQ5T0F9 858 aaKnown RBP18.76■□□□□ 0.59
LDLR-213ENST00000560502 RBM46Q8TBY0 533 aaKnown RBP18.75■□□□□ 0.59
LDLR-213ENST00000560502 RNF181Q9P0P0 153 aa18.75■□□□□ 0.59
LDLR-213ENST00000560502 TIAM2Q8IVF5 1701 aa18.74■□□□□ 0.59
LDLR-213ENST00000560502 CCDC88AQ3V6T2 1871 aa18.73■□□□□ 0.59
LDLR-213ENST00000560502 CARMIL3Q8ND23 1372 aa18.73■□□□□ 0.59
LDLR-213ENST00000560502 DNAJC5GQ8N7S2 189 aa18.73■□□□□ 0.59
LDLR-213ENST00000560502 KDM2BQ8NHM5 1336 aa18.73■□□□□ 0.59
LDLR-213ENST00000560502 COL11A2P13942 1736 aaPredicted RBP18.72■□□□□ 0.59
LDLR-213ENST00000560502 SERPINB2P05120 415 aa18.72■□□□□ 0.59
LDLR-213ENST00000560502 EIF5P55010 431 aaKnown RBP18.72■□□□□ 0.59
LDLR-213ENST00000560502 ZC3H4Q9UPT8 1303 aaKnown RBP18.72■□□□□ 0.59
LDLR-213ENST00000560502 HEG1Q9ULI3 1381 aa18.71■□□□□ 0.59
LDLR-213ENST00000560502 IL17REQ8NFR9 667 aa18.71■□□□□ 0.59
LDLR-213ENST00000560502 ZNF496Q96IT1 587 aaPredicted RBP18.71■□□□□ 0.59
LDLR-213ENST00000560502 BCORQ6W2J9 1755 aa18.7■□□□□ 0.58
LDLR-213ENST00000560502 STARD3NLO95772 234 aa18.7■□□□□ 0.58
LDLR-213ENST00000560502 CANXP27824 592 aaKnown RBP18.7■□□□□ 0.58
LDLR-213ENST00000560502 PRELPP51888 382 aa18.7■□□□□ 0.58
LDLR-213ENST00000560502 RASSF7Q02833 373 aa18.7■□□□□ 0.58
LDLR-213ENST00000560502 TTC5Q8N0Z6 440 aa18.7■□□□□ 0.58
LDLR-213ENST00000560502 CEMIPQ8WUJ3 1361 aa18.69■□□□□ 0.58
LDLR-213ENST00000560502 GNAT3A8MTJ3 354 aa18.69■□□□□ 0.58
LDLR-213ENST00000560502 FSTL1Q12841 308 aa18.69■□□□□ 0.58
LDLR-213ENST00000560502 ZNF790Q6PG37 636 aa18.69■□□□□ 0.58
LDLR-213ENST00000560502 GAS2L2Q8NHY3 880 aa18.69■□□□□ 0.58
LDLR-213ENST00000560502 A0A087WZG4 1122 aa18.68■□□□□ 0.58
LDLR-213ENST00000560502 C16orf71Q8IYS4 520 aaPredicted RBP18.68■□□□□ 0.58
LDLR-213ENST00000560502 FER1L6Q2WGJ9 1857 aa18.68■□□□□ 0.58
LDLR-213ENST00000560502 DICER1Q9UPY3 1922 aaKnown RBP18.68■□□□□ 0.58
LDLR-213ENST00000560502 U2SURPO15042 1029 aaKnown RBP18.67■□□□□ 0.58
LDLR-213ENST00000560502 TEFQ10587 303 aa18.67■□□□□ 0.58
LDLR-213ENST00000560502 C2CD5Q86YS7 1000 aa18.67■□□□□ 0.58
LDLR-213ENST00000560502 TTLL6Q8N841 843 aa18.67■□□□□ 0.58
LDLR-213ENST00000560502 PRKRIP1Q9H875 184 aaPredicted RBP18.67■□□□□ 0.58
LDLR-213ENST00000560502 RRAGCQ9HB90 399 aa18.67■□□□□ 0.58
LDLR-213ENST00000560502 ARFGEF2Q9Y6D5 1785 aa18.66■□□□□ 0.58
LDLR-213ENST00000560502 LMNB1P20700 586 aa18.66■□□□□ 0.58
LDLR-213ENST00000560502 TBC1D9BQ66K14 1250 aa18.66■□□□□ 0.58
LDLR-213ENST00000560502 TEX13AQ9BXU3 409 aaPredicted RBP18.66■□□□□ 0.58
LDLR-213ENST00000560502 NFKBIEO00221 500 aa18.65■□□□□ 0.58
LDLR-213ENST00000560502 BICDL1Q6ZP65 573 aa18.65■□□□□ 0.58
LDLR-213ENST00000560502 H0YIN7 160 aa18.64■□□□□ 0.57
LDLR-213ENST00000560502 IL6STP40189 918 aaPredicted RBP18.64■□□□□ 0.57
LDLR-213ENST00000560502 CACNA1SQ13698 1873 aa18.64■□□□□ 0.57
LDLR-213ENST00000560502 PRR5LQ6MZQ0 368 aa18.63■□□□□ 0.57
LDLR-213ENST00000560502 PHACTR3Q96KR7 559 aa18.63■□□□□ 0.57
LDLR-213ENST00000560502 FMNL2Q96PY5 1086 aa18.63■□□□□ 0.57
LDLR-213ENST00000560502 BRIP1Q9BX63 1249 aa18.63■□□□□ 0.57
LDLR-213ENST00000560502 RSPH6AQ9H0K4 717 aa18.63■□□□□ 0.57
LDLR-213ENST00000560502 GLTPD2A6NH11 291 aa18.62■□□□□ 0.57
LDLR-213ENST00000560502 HTRA3P83110 453 aa18.62■□□□□ 0.57
LDLR-213ENST00000560502 RALBP1Q15311 655 aa18.62■□□□□ 0.57
LDLR-213ENST00000560502 PDZRN3Q9UPQ7 1066 aa18.62■□□□□ 0.57
LDLR-213ENST00000560502 TBC1D2BQ9UPU7 963 aa18.62■□□□□ 0.57
LDLR-213ENST00000560502 SLX4Q8IY92 1834 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 KCNQ3O43525 872 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 CAMTA2O94983 1202 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 A1BGP04217 495 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 PRKAR2BP31323 418 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 CNGB1Q14028 1251 aaPredicted RBP18.61■□□□□ 0.57
LDLR-213ENST00000560502 JMYQ8N9B5 988 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 SMC1BQ8NDV3 1235 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 KLRG1Q96E93 195 aa18.61■□□□□ 0.57
LDLR-213ENST00000560502 PDE6BP35913 854 aa18.6■□□□□ 0.57
LDLR-213ENST00000560502 ZNF330Q9Y3S2 320 aaPredicted RBP18.59■□□□□ 0.57
LDLR-213ENST00000560502 BTBD11A6QL63 1104 aa18.58■□□□□ 0.56
LDLR-213ENST00000560502 VEGFAP15692 232 aaPredicted RBP18.58■□□□□ 0.56
LDLR-213ENST00000560502 CCDC24Q8N4L8 307 aa18.58■□□□□ 0.56
LDLR-213ENST00000560502 ZNF622Q969S3 477 aaKnown RBP eCLIP18.58■□□□□ 0.56
LDLR-213ENST00000560502 CFAP53Q96M91 514 aa18.58■□□□□ 0.56
LDLR-213ENST00000560502 LTBP3Q9NS15 1303 aa18.57■□□□□ 0.56
LDLR-213ENST00000560502 CNBD1Q8NA66 436 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms