RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 IL27Q8NEV9 243 aa12.04□□□□□ -0.48
RTF1-206ENST00000560447 NBPF4Q96M43 638 aa12.04□□□□□ -0.48
RTF1-206ENST00000560447 STRCP1A6NGW2 1772 aa12.04□□□□□ -0.48
RTF1-206ENST00000560447 RGPD5Q99666 1765 aa12.04□□□□□ -0.48
RTF1-206ENST00000560447 MEIS3Q99687 375 aa12.03□□□□□ -0.48
RTF1-206ENST00000560447 TBC1D2Q9BYX2 928 aa12.03□□□□□ -0.48
RTF1-206ENST00000560447 HDAC5Q9UQL6 1122 aa12.03□□□□□ -0.48
RTF1-206ENST00000560447 SLC4A3P48751 1232 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 EIF4A1P60842 406 aaKnown RBP12.02□□□□□ -0.49
RTF1-206ENST00000560447 TEFQ10587 303 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 FKBP5Q13451 457 aaPredicted RBP12.02□□□□□ -0.49
RTF1-206ENST00000560447 CASC1Q6TDU7 716 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 HSCBQ8IWL3 235 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 LTV1Q96GA3 475 aaPredicted RBP12.02□□□□□ -0.49
RTF1-206ENST00000560447 ANTXR1Q9H6X2 564 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.02□□□□□ -0.49
RTF1-206ENST00000560447 PKD1L3Q7Z443 1732 aa12.02□□□□□ -0.49
RTF1-206ENST00000560447 PARP4Q9UKK3 1724 aaKnown RBP12.02□□□□□ -0.49
RTF1-206ENST00000560447 ATP8B2P98198 1209 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 C1orf141Q5JVX7 400 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 HDGFL1Q5TGJ6 251 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 ZNF530Q6P9A1 599 aaPredicted RBP12.01□□□□□ -0.49
RTF1-206ENST00000560447 TBC1D9Q6ZT07 1266 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 G2E3Q7L622 706 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 ORAI2Q96SN7 254 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 SRCIN1Q9C0H9 1055 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 MIS18AQ9NYP9 233 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 AOX1Q06278 1338 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 HEG1Q9ULI3 1381 aa12.01□□□□□ -0.49
RTF1-206ENST00000560447 CHRM1P11229 460 aaPredicted RBP12□□□□□ -0.49
RTF1-206ENST00000560447 ATF3P18847 181 aa12□□□□□ -0.49
RTF1-206ENST00000560447 CADPS2Q86UW7 1296 aa12□□□□□ -0.49
RTF1-206ENST00000560447 ANKRD24Q8TF21 1146 aa12□□□□□ -0.49
RTF1-206ENST00000560447 SPOCK2Q92563 424 aa12□□□□□ -0.49
RTF1-206ENST00000560447 CHMP5Q9NZZ3 219 aa12□□□□□ -0.49
RTF1-206ENST00000560447 CIZ1Q9ULV3 898 aaPredicted RBP12□□□□□ -0.49
RTF1-206ENST00000560447 NPHP3Q7Z494 1330 aa12□□□□□ -0.49
RTF1-206ENST00000560447 TNS3Q68CZ2 1445 aa12□□□□□ -0.49
RTF1-206ENST00000560447 RNMTO43148 476 aaKnown RBP11.99□□□□□ -0.49
RTF1-206ENST00000560447 EPB41L2O43491 1005 aaKnown RBP11.99□□□□□ -0.49
RTF1-206ENST00000560447 ERBB3P21860 1342 aa11.99□□□□□ -0.49
RTF1-206ENST00000560447 CPDO75976 1380 aa11.99□□□□□ -0.49
RTF1-206ENST00000560447 MRC1P22897 1456 aa11.99□□□□□ -0.49
RTF1-206ENST00000560447 XIRP1Q702N8 1843 aaKnown RBP11.99□□□□□ -0.49
RTF1-206ENST00000560447 PXDNQ92626 1479 aa11.98□□□□□ -0.49
RTF1-206ENST00000560447 TMEM94Q12767 1356 aa11.98□□□□□ -0.49
RTF1-206ENST00000560447 RAB11FIP3O75154 756 aa11.98□□□□□ -0.49
RTF1-206ENST00000560447 GSPT1P15170 499 aaKnown RBP11.98□□□□□ -0.49
RTF1-206ENST00000560447 SLC4A10Q6U841 1118 aa11.98□□□□□ -0.49
RTF1-206ENST00000560447 USHBP1Q8N6Y0 703 aa11.98□□□□□ -0.49
RTF1-206ENST00000560447 SALL3Q9BXA9 1300 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 F6X3S4 739 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 ALDH1L1O75891 902 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 IER5LQ5T953 404 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 TMEM106CQ9BVX2 250 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 DNAJC5Q9H3Z4 198 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 DBF4Q9UBU7 674 aaPredicted RBP11.97□□□□□ -0.49
RTF1-206ENST00000560447 STAP2Q9UGK3 403 aa11.97□□□□□ -0.49
RTF1-206ENST00000560447 AK9Q5TCS8 1911 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 BTBD11A6QL63 1104 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 REC8O95072 547 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 UBTFL1P0CB47 393 aaPredicted RBP11.96□□□□□ -0.49
RTF1-206ENST00000560447 PTMSP20962 102 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 RABEP1Q15276 862 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 HSP90AB4PQ58FF6 505 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 SSH3Q8TE77 659 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 LRRCC1Q9C099 1032 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 PCDHB8Q9UN66 801 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 COLQQ9Y215 455 aaPredicted RBP11.96□□□□□ -0.49
RTF1-206ENST00000560447 LAMB4A4D0S4 1761 aa11.96□□□□□ -0.49
RTF1-206ENST00000560447 PDE1AP54750 535 aa11.95□□□□□ -0.5
RTF1-206ENST00000560447 DNAAF4Q8WXU2 420 aa11.95□□□□□ -0.5
RTF1-206ENST00000560447 USP44Q9H0E7 712 aa11.95□□□□□ -0.5
RTF1-206ENST00000560447 LGR6Q9HBX8 967 aa11.95□□□□□ -0.5
RTF1-206ENST00000560447 SPG7Q9UQ90 795 aa11.95□□□□□ -0.5
RTF1-206ENST00000560447 HSP90AB1P08238 724 aaKnown RBP11.94□□□□□ -0.5
RTF1-206ENST00000560447 TATP17735 454 aaPredicted RBP11.94□□□□□ -0.5
RTF1-206ENST00000560447 SDSP20132 328 aa11.94□□□□□ -0.5
RTF1-206ENST00000560447 MTX1Q13505 466 aa11.94□□□□□ -0.5
RTF1-206ENST00000560447 RAPGEF4Q8WZA2 1011 aa11.94□□□□□ -0.5
RTF1-206ENST00000560447 LRRC59Q96AG4 307 aaKnown RBP11.94□□□□□ -0.5
RTF1-206ENST00000560447 RBM33Q96EV2 1170 aaKnown RBP11.94□□□□□ -0.5
RTF1-206ENST00000560447 KIF2CQ99661 725 aa11.94□□□□□ -0.5
RTF1-206ENST00000560447 HYPKQ9NX55 129 aa11.94□□□□□ -0.5
RTF1-206ENST00000560447 SPATA31A3Q5VYP0 1347 aa11.93□□□□□ -0.5
RTF1-206ENST00000560447 GIGYF1O75420 1035 aaPredicted RBP11.93□□□□□ -0.5
RTF1-206ENST00000560447 FRAT2O75474 233 aaPredicted RBP11.93□□□□□ -0.5
RTF1-206ENST00000560447 DDIT3P35638 169 aa11.93□□□□□ -0.5
RTF1-206ENST00000560447 BEND3Q5T5X7 828 aa11.93□□□□□ -0.5
RTF1-206ENST00000560447 C5P01031 1676 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 K7ELQ4 463 aaPredicted RBP11.92□□□□□ -0.5
RTF1-206ENST00000560447 ERC2O15083 957 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 DDX58O95786 925 aaKnown RBP11.92□□□□□ -0.5
RTF1-206ENST00000560447 MX1P20591 662 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 KSR2Q6VAB6 950 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 IL17RAQ96F46 866 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 USP26Q9BXU7 913 aa11.92□□□□□ -0.5
RTF1-206ENST00000560447 SLKQ9H2G2 1235 aaPredicted RBP11.92□□□□□ -0.5
RTF1-206ENST00000560447 DDX21Q9NR30 783 aaKnown RBP eCLIP11.92□□□□□ -0.5
RTF1-206ENST00000560447 LRRFIP2Q9Y608 721 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms