RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ZBTB1Q9Y2K1 713 aa16.73■□□□□ 0.27
SNX1-209ENST00000559961 UTRNP46939 3433 aa16.73■□□□□ 0.27
SNX1-209ENST00000559961 COL15A1P39059 1388 aa16.73■□□□□ 0.27
SNX1-209ENST00000559961 C10orf71Q711Q0 1435 aa16.72■□□□□ 0.27
SNX1-209ENST00000559961 TM4SF1P30408 202 aa16.72■□□□□ 0.27
SNX1-209ENST00000559961 POLRMTO00411 1230 aaKnown RBP16.71■□□□□ 0.27
SNX1-209ENST00000559961 ZNF496Q96IT1 587 aaPredicted RBP16.71■□□□□ 0.27
SNX1-209ENST00000559961 RSPH6AQ9H0K4 717 aa16.71■□□□□ 0.27
SNX1-209ENST00000559961 PXDNLA1KZ92 1463 aa16.71■□□□□ 0.27
SNX1-209ENST00000559961 MRC1P22897 1456 aa16.7■□□□□ 0.26
SNX1-209ENST00000559961 HEG1Q9ULI3 1381 aa16.7■□□□□ 0.26
SNX1-209ENST00000559961 HTATSF1O43719 755 aaKnown RBP16.7■□□□□ 0.26
SNX1-209ENST00000559961 DDR1Q08345 913 aa16.7■□□□□ 0.26
SNX1-209ENST00000559961 PHACTR3Q96KR7 559 aa16.7■□□□□ 0.26
SNX1-209ENST00000559961 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
SNX1-209ENST00000559961 SERPINB2P05120 415 aa16.69■□□□□ 0.26
SNX1-209ENST00000559961 NFIXQ14938 502 aa16.69■□□□□ 0.26
SNX1-209ENST00000559961 BICDL1Q6ZP65 573 aa16.69■□□□□ 0.26
SNX1-209ENST00000559961 COL5A3P25940 1745 aaPredicted RBP16.68■□□□□ 0.26
SNX1-209ENST00000559961 H0YIN7 160 aa16.68■□□□□ 0.26
SNX1-209ENST00000559961 IL6STP40189 918 aaPredicted RBP16.68■□□□□ 0.26
SNX1-209ENST00000559961 EIF5P55010 431 aaKnown RBP16.68■□□□□ 0.26
SNX1-209ENST00000559961 PDZRN3Q9UPQ7 1066 aa16.68■□□□□ 0.26
SNX1-209ENST00000559961 C4AP0C0L4 1744 aa16.67■□□□□ 0.26
SNX1-209ENST00000559961 COL3A1P02461 1466 aaPredicted RBP16.67■□□□□ 0.26
SNX1-209ENST00000559961 SNRPA1P09661 255 aaKnown RBP16.67■□□□□ 0.26
SNX1-209ENST00000559961 CHRNA5P30532 468 aa16.67■□□□□ 0.26
SNX1-209ENST00000559961 C16orf71Q8IYS4 520 aaPredicted RBP16.66■□□□□ 0.26
SNX1-209ENST00000559961 SETDB2Q96T68 719 aa16.66■□□□□ 0.26
SNX1-209ENST00000559961 TBC1D2BQ9UPU7 963 aa16.66■□□□□ 0.26
SNX1-209ENST00000559961 KCNA3P22001 575 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 PDE6BP35913 854 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 TAF7Q15545 349 aaPredicted RBP16.65■□□□□ 0.26
SNX1-209ENST00000559961 C9orf131Q5VYM1 1079 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 MCM10Q7L590 875 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 C2CD5Q86YS7 1000 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 TTLL6Q8N841 843 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 PNISRQ8TF01 805 aaKnown RBP16.65■□□□□ 0.26
SNX1-209ENST00000559961 ZNF652Q9Y2D9 606 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 MAPK8IP3Q9UPT6 1336 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 KCPQ6ZWJ8 1503 aa16.65■□□□□ 0.26
SNX1-209ENST00000559961 CEMIPQ8WUJ3 1361 aa16.64■□□□□ 0.26
SNX1-209ENST00000559961 A1BGP04217 495 aa16.64■□□□□ 0.25
SNX1-209ENST00000559961 ADCY9O60503 1353 aa16.64■□□□□ 0.25
SNX1-209ENST00000559961 TJP1Q07157 1748 aa16.63■□□□□ 0.25
SNX1-209ENST00000559961 ST5P78524 1137 aa16.63■□□□□ 0.25
SNX1-209ENST00000559961 DZIP3Q86Y13 1208 aaKnown RBP16.63■□□□□ 0.25
SNX1-209ENST00000559961 RNF181Q9P0P0 153 aa16.63■□□□□ 0.25
SNX1-209ENST00000559961 MYH14Q7Z406 1995 aaKnown RBP16.63■□□□□ 0.25
SNX1-209ENST00000559961 KDM2BQ8NHM5 1336 aa16.63■□□□□ 0.25
SNX1-209ENST00000559961 GOLGB1Q14789 3259 aaKnown RBP16.62■□□□□ 0.25
SNX1-209ENST00000559961 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.25
SNX1-209ENST00000559961 BCL2L12Q9HB09 334 aa16.62■□□□□ 0.25
SNX1-209ENST00000559961 KCNQ3O43525 872 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 RALBP1Q15311 655 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 TBC1D9BQ66K14 1250 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 CNBD1Q8NA66 436 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 BRIP1Q9BX63 1249 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 CARMIL3Q8ND23 1372 aa16.61■□□□□ 0.25
SNX1-209ENST00000559961 DCTN1Q14203 1278 aa16.6■□□□□ 0.25
SNX1-209ENST00000559961 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
SNX1-209ENST00000559961 TOMM70O94826 608 aa16.59■□□□□ 0.25
SNX1-209ENST00000559961 HSPA6P17066 643 aa16.59■□□□□ 0.25
SNX1-209ENST00000559961 CLEC4GQ6UXB4 293 aa16.59■□□□□ 0.25
SNX1-209ENST00000559961 NBPF5PQ86XG9 351 aaPredicted RBP16.59■□□□□ 0.25
SNX1-209ENST00000559961 LMNB1P20700 586 aa16.58■□□□□ 0.24
SNX1-209ENST00000559961 GTF2E1P29083 439 aaPredicted RBP16.58■□□□□ 0.24
SNX1-209ENST00000559961 NFE2L2Q16236 605 aa16.58■□□□□ 0.24
SNX1-209ENST00000559961 ADAMTS7Q9UKP4 1686 aa16.58■□□□□ 0.24
SNX1-209ENST00000559961 N4BP2Q86UW6 1770 aaPredicted RBP16.58■□□□□ 0.24
SNX1-209ENST00000559961 KIF13BQ9NQT8 1826 aa16.58■□□□□ 0.24
SNX1-209ENST00000559961 KIF3CO14782 793 aa16.57■□□□□ 0.24
SNX1-209ENST00000559961 CAMTA2O94983 1202 aa16.57■□□□□ 0.24
SNX1-209ENST00000559961 TPTE2Q6XPS3 522 aa16.57■□□□□ 0.24
SNX1-209ENST00000559961 CNKSR1Q969H4 720 aa16.57■□□□□ 0.24
SNX1-209ENST00000559961 SOGA3Q5TF21 947 aa16.56■□□□□ 0.24
SNX1-209ENST00000559961 PRR5LQ6MZQ0 368 aa16.56■□□□□ 0.24
SNX1-209ENST00000559961 MIS18AQ9NYP9 233 aa16.56■□□□□ 0.24
SNX1-209ENST00000559961 ZC3H4Q9UPT8 1303 aaKnown RBP16.55■□□□□ 0.24
SNX1-209ENST00000559961 PIP4K2AP48426 406 aaPredicted RBP16.55■□□□□ 0.24
SNX1-209ENST00000559961 LMOD3Q0VAK6 560 aa16.55■□□□□ 0.24
SNX1-209ENST00000559961 DPY19L2Q6NUT2 758 aa16.55■□□□□ 0.24
SNX1-209ENST00000559961 RGL2O15211 777 aa16.54■□□□□ 0.24
SNX1-209ENST00000559961 APLP1P51693 650 aa16.54■□□□□ 0.24
SNX1-209ENST00000559961 KIF6Q6ZMV9 814 aa16.54■□□□□ 0.24
SNX1-209ENST00000559961 MASTLQ96GX5 879 aa16.54■□□□□ 0.24
SNX1-209ENST00000559961 NMRK2Q9NPI5 230 aa16.54■□□□□ 0.24
SNX1-209ENST00000559961 ZNF219Q9P2Y4 722 aaPredicted RBP16.54■□□□□ 0.24
SNX1-209ENST00000559961 NIP7Q9Y221 180 aaKnown RBP eCLIP16.54■□□□□ 0.24
SNX1-209ENST00000559961 PRAMEF22A3QJZ6 481 aa16.53■□□□□ 0.24
SNX1-209ENST00000559961 DDX10Q13206 875 aaKnown RBP16.53■□□□□ 0.24
SNX1-209ENST00000559961 STYK1Q6J9G0 422 aa16.53■□□□□ 0.24
SNX1-209ENST00000559961 CCDC24Q8N4L8 307 aa16.53■□□□□ 0.24
SNX1-209ENST00000559961 NGEFQ8N5V2 710 aa16.53■□□□□ 0.24
SNX1-209ENST00000559961 RRAGCQ9HB90 399 aa16.53■□□□□ 0.24
SNX1-209ENST00000559961 UBR2Q8IWV8 1755 aa16.52■□□□□ 0.24
SNX1-209ENST00000559961 C21orf2O43822 256 aa16.52■□□□□ 0.24
SNX1-209ENST00000559961 RIPK4P57078 832 aa16.52■□□□□ 0.24
SNX1-209ENST00000559961 RASSF7Q02833 373 aa16.52■□□□□ 0.24
SNX1-209ENST00000559961 WDR43Q15061 677 aaKnown RBP eCLIP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms