RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 TEFQ10587 303 aa12.27□□□□□ -0.44
LRRC28-216ENST00000559819 BEND3Q5T5X7 828 aa12.27□□□□□ -0.44
LRRC28-216ENST00000559819 MED1Q15648 1581 aaPredicted RBP12.27□□□□□ -0.44
LRRC28-216ENST00000559819 POLA2Q14181 598 aa12.27□□□□□ -0.45
LRRC28-216ENST00000559819 DNAAF4Q8WXU2 420 aa12.27□□□□□ -0.45
LRRC28-216ENST00000559819 PRAMEF22A3QJZ6 481 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 NCLP19338 710 aaKnown RBP12.26□□□□□ -0.45
LRRC28-216ENST00000559819 RHPN1Q8TCX5 695 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 TMX3Q96JJ7 454 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 ADGRL3Q9HAR2 1447 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 N4BP2Q86UW6 1770 aaPredicted RBP12.26□□□□□ -0.45
LRRC28-216ENST00000559819 AKAP4Q5JQC9 854 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 KCNH5Q8NCM2 988 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 ADCY9O60503 1353 aa12.26□□□□□ -0.45
LRRC28-216ENST00000559819 GCP02774 474 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 PROSER3Q2NL68 480 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 KLHL40Q2TBA0 621 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 CWC22Q9HCG8 908 aaKnown RBP12.25□□□□□ -0.45
LRRC28-216ENST00000559819 LMBRD1Q9NUN5 540 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 RNMTO43148 476 aaKnown RBP12.25□□□□□ -0.45
LRRC28-216ENST00000559819 PLEKHO1Q53GL0 409 aaPredicted RBP12.25□□□□□ -0.45
LRRC28-216ENST00000559819 PI4K2BQ8TCG2 481 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 UPF3BQ9BZI7 483 aaKnown RBP12.25□□□□□ -0.45
LRRC28-216ENST00000559819 KDM3BQ7LBC6 1761 aa12.25□□□□□ -0.45
LRRC28-216ENST00000559819 MCCP23508 829 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 ANKRD24Q8TF21 1146 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 RAB11FIP3O75154 756 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 PRPF40AO75400 957 aaKnown RBP12.24□□□□□ -0.45
LRRC28-216ENST00000559819 CAVIN1Q6NZI2 390 aaKnown RBP12.24□□□□□ -0.45
LRRC28-216ENST00000559819 ARHGEF25Q86VW2 580 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 AXIN2Q9Y2T1 843 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 CACNA1FO60840 1977 aa12.24□□□□□ -0.45
LRRC28-216ENST00000559819 ISY1Q9ULR0 285 aaKnown RBP12.24□□□□□ -0.45
LRRC28-216ENST00000559819 C1orf141Q5JVX7 400 aa12.23□□□□□ -0.45
LRRC28-216ENST00000559819 RBM27Q9P2N5 1060 aaKnown RBP12.23□□□□□ -0.45
LRRC28-216ENST00000559819 AOX1Q06278 1338 aa12.23□□□□□ -0.45
LRRC28-216ENST00000559819 HOXB7P09629 217 aa12.23□□□□□ -0.45
LRRC28-216ENST00000559819 MAP3K2Q9Y2U5 619 aa12.23□□□□□ -0.45
LRRC28-216ENST00000559819 KIF1BPQ96EK5 621 aa12.22□□□□□ -0.45
LRRC28-216ENST00000559819 LMO7Q8WWI1 1683 aa12.22□□□□□ -0.45
LRRC28-216ENST00000559819 OS9Q13438 667 aaPredicted RBP12.22□□□□□ -0.45
LRRC28-216ENST00000559819 CWF19L2Q2TBE0 894 aaKnown RBP12.22□□□□□ -0.45
LRRC28-216ENST00000559819 GPT2Q8TD30 523 aa12.22□□□□□ -0.45
LRRC28-216ENST00000559819 PA2G4Q9UQ80 394 aaKnown RBP12.22□□□□□ -0.45
LRRC28-216ENST00000559819 NSFL1CQ9UNZ2 370 aaKnown RBP12.21□□□□□ -0.45
LRRC28-216ENST00000559819 GIGYF1O75420 1035 aaPredicted RBP12.21□□□□□ -0.46
LRRC28-216ENST00000559819 ANAPC15P60006 121 aa12.21□□□□□ -0.46
LRRC28-216ENST00000559819 CUL4AQ13619 759 aa12.21□□□□□ -0.46
LRRC28-216ENST00000559819 AMOTQ4VCS5 1084 aa12.21□□□□□ -0.46
LRRC28-216ENST00000559819 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.46
LRRC28-216ENST00000559819 ERBB4Q15303 1308 aa12.21□□□□□ -0.46
LRRC28-216ENST00000559819 ZSCAN23Q3MJ62 389 aa12.2□□□□□ -0.46
LRRC28-216ENST00000559819 HSPA4P34932 840 aa12.2□□□□□ -0.46
LRRC28-216ENST00000559819 AIMP1Q12904 312 aaKnown RBP12.2□□□□□ -0.46
LRRC28-216ENST00000559819 FOXD4L6Q3SYB3 417 aaPredicted RBP12.2□□□□□ -0.46
LRRC28-216ENST00000559819 FOXD4L3Q6VB84 417 aaPredicted RBP12.2□□□□□ -0.46
LRRC28-216ENST00000559819 C9orf78Q9NZ63 289 aaPredicted RBP12.2□□□□□ -0.46
LRRC28-216ENST00000559819 NPHP4O75161 1426 aaPredicted RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 SGSM2O43147 1006 aa12.19□□□□□ -0.46
LRRC28-216ENST00000559819 MCM2P49736 904 aa12.19□□□□□ -0.46
LRRC28-216ENST00000559819 ZC3H6P61129 1189 aaKnown RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 KRT28Q7Z3Y7 464 aa12.19□□□□□ -0.46
LRRC28-216ENST00000559819 LARP6Q9BRS8 491 aaKnown RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 SPG7Q9UQ90 795 aa12.19□□□□□ -0.46
LRRC28-216ENST00000559819 SLIT3O75094 1523 aa12.19□□□□□ -0.46
LRRC28-216ENST00000559819 NASPP49321 788 aaPredicted RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 CWC27Q6UX04 472 aaKnown RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 LSG1Q9H089 658 aaKnown RBP12.19□□□□□ -0.46
LRRC28-216ENST00000559819 SLC39A6Q13433 755 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 KSR2Q6VAB6 950 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 CNTROBQ8N137 903 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.18□□□□□ -0.46
LRRC28-216ENST00000559819 PHRF1Q9P1Y6 1649 aaKnown RBP12.18□□□□□ -0.46
LRRC28-216ENST00000559819 ZNF142P52746 1687 aaPredicted RBP12.18□□□□□ -0.46
LRRC28-216ENST00000559819 BRD1O95696 1058 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 ZNF445P59923 1031 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 RASEFQ8IZ41 740 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 DDX17Q92841 729 aaKnown RBP12.18□□□□□ -0.46
LRRC28-216ENST00000559819 SNX14Q9Y5W7 946 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 RAD50Q92878 1312 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 NCAPD2Q15021 1401 aa12.18□□□□□ -0.46
LRRC28-216ENST00000559819 CPA1P15085 419 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 DTNBO60941 627 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 IL17RAQ96F46 866 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 TMEM63CQ9P1W3 806 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 HEG1Q9ULI3 1381 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 PROSER2Q86WR7 435 aaPredicted RBP12.17□□□□□ -0.46
LRRC28-216ENST00000559819 RBSNQ9H1K0 784 aa12.17□□□□□ -0.46
LRRC28-216ENST00000559819 ALDH1L1O75891 902 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 CLCN1P35523 988 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 PRIM1P49642 420 aaKnown RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 MTX1Q13505 466 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 PDIA6Q15084 440 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 HSP90AB4PQ58FF6 505 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 TRIM44Q96DX7 344 aaPredicted RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 KAZALD1Q96I82 304 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 USP42Q9H9J4 1324 aaKnown RBP12.16□□□□□ -0.46
LRRC28-216ENST00000559819 ESPNB1AK53 854 aa12.16□□□□□ -0.46
LRRC28-216ENST00000559819 MYL6BP14649 208 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms