RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 PLEKHG2Q9H7P9 1386 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 HEG1Q9ULI3 1381 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 PHKG2P15735 406 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 USP26Q9BXU7 913 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 LRRCC1Q9C099 1032 aa13.64□□□□□ -0.23
SPG11-217ENST00000559511 PI4KAP2A4QPH2 592 aa13.63□□□□□ -0.23
SPG11-217ENST00000559511 PI4KAP1Q8N8J0 262 aa13.63□□□□□ -0.23
SPG11-217ENST00000559511 SRCIN1Q9C0H9 1055 aa13.63□□□□□ -0.23
SPG11-217ENST00000559511 ADCY9O60503 1353 aa13.63□□□□□ -0.23
SPG11-217ENST00000559511 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
SPG11-217ENST00000559511 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
SPG11-217ENST00000559511 COL5A2P05997 1499 aaPredicted RBP13.62□□□□□ -0.23
SPG11-217ENST00000559511 PRAMEF22A3QJZ6 481 aa13.62□□□□□ -0.23
SPG11-217ENST00000559511 GIGYF1O75420 1035 aaPredicted RBP13.62□□□□□ -0.23
SPG11-217ENST00000559511 BEND3Q5T5X7 828 aa13.62□□□□□ -0.23
SPG11-217ENST00000559511 DNAAF4Q8WXU2 420 aa13.62□□□□□ -0.23
SPG11-217ENST00000559511 SHANK3Q9BYB0 1731 aa13.62□□□□□ -0.23
SPG11-217ENST00000559511 MRC1P22897 1456 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 WDR17Q8IZU2 1322 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 EIF5BO60841 1220 aaKnown RBP13.61□□□□□ -0.23
SPG11-217ENST00000559511 NBPF7P0C2Y1 421 aaPredicted RBP13.61□□□□□ -0.23
SPG11-217ENST00000559511 CASC1Q6TDU7 716 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 IFNL2Q8IZJ0 200 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 SSH3Q8TE77 659 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 K7ELQ4 463 aaPredicted RBP13.61□□□□□ -0.23
SPG11-217ENST00000559511 CYP27B1O15528 508 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 MX1P20591 662 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 PROSER3Q2NL68 480 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 CHMP4AQ9BY43 222 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 SLC52A2Q9HAB3 445 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 ROBO1Q9Y6N7 1651 aa13.61□□□□□ -0.23
SPG11-217ENST00000559511 AK9Q5TCS8 1911 aa13.6□□□□□ -0.23
SPG11-217ENST00000559511 PPP1R42Q7Z4L9 355 aa13.6□□□□□ -0.23
SPG11-217ENST00000559511 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
SPG11-217ENST00000559511 MCM4P33991 863 aa13.6□□□□□ -0.23
SPG11-217ENST00000559511 POLA2Q14181 598 aa13.6□□□□□ -0.23
SPG11-217ENST00000559511 NFATC2IPQ8NCF5 419 aa13.59□□□□□ -0.23
SPG11-217ENST00000559511 ERC2O15083 957 aa13.58□□□□□ -0.23
SPG11-217ENST00000559511 RABEP1Q15276 862 aa13.58□□□□□ -0.23
SPG11-217ENST00000559511 DCAF5Q96JK2 942 aa13.58□□□□□ -0.23
SPG11-217ENST00000559511 IL1RAPL2Q9NP60 686 aa13.58□□□□□ -0.23
SPG11-217ENST00000559511 FOXD4L1Q9NU39 408 aa13.58□□□□□ -0.23
SPG11-217ENST00000559511 SLC39A6Q13433 755 aa13.58□□□□□ -0.24
SPG11-217ENST00000559511 ZNF790Q6PG37 636 aa13.58□□□□□ -0.24
SPG11-217ENST00000559511 TOM1L2Q6ZVM7 507 aa13.58□□□□□ -0.24
SPG11-217ENST00000559511 STAP2Q9UGK3 403 aa13.58□□□□□ -0.24
SPG11-217ENST00000559511 MAP3K2Q9Y2U5 619 aa13.58□□□□□ -0.24
SPG11-217ENST00000559511 SRGAP3O43295 1099 aa13.57□□□□□ -0.24
SPG11-217ENST00000559511 SURF6O75683 361 aaKnown RBP13.57□□□□□ -0.24
SPG11-217ENST00000559511 REC8O95072 547 aa13.57□□□□□ -0.24
SPG11-217ENST00000559511 PRKCSHP14314 528 aaPredicted RBP13.57□□□□□ -0.24
SPG11-217ENST00000559511 CIZ1Q9ULV3 898 aaPredicted RBP13.57□□□□□ -0.24
SPG11-217ENST00000559511 LAMB4A4D0S4 1761 aa13.56□□□□□ -0.24
SPG11-217ENST00000559511 HSP90AA1P07900 732 aaKnown RBP13.56□□□□□ -0.24
SPG11-217ENST00000559511 GLI3P10071 1580 aa13.56□□□□□ -0.24
SPG11-217ENST00000559511 UBR2Q8IWV8 1755 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 RAB11FIP3O75154 756 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 KSR2Q6VAB6 950 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 NUTM1Q86Y26 1132 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 UNC5CLQ8IV45 518 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 TNPO1Q92973 898 aaKnown RBP13.55□□□□□ -0.24
SPG11-217ENST00000559511 CARD10Q9BWT7 1032 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 AHDC1Q5TGY3 1603 aaPredicted RBP13.55□□□□□ -0.24
SPG11-217ENST00000559511 LTBP4Q8N2S1 1624 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 COL22A1Q8NFW1 1626 aaPredicted RBP13.55□□□□□ -0.24
SPG11-217ENST00000559511 TRIM6-TRIM34B2RNG4 842 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 RAB3GAP1Q15042 981 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 RHPN1Q8TCX5 695 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 RILPL2Q969X0 211 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 ESYT1Q9BSJ8 1104 aa13.55□□□□□ -0.24
SPG11-217ENST00000559511 AOX1Q06278 1338 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 PDIA6Q15084 440 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 CWF19L2Q2TBE0 894 aaKnown RBP13.54□□□□□ -0.24
SPG11-217ENST00000559511 LARP1Q6PKG0 1096 aaKnown RBP13.54□□□□□ -0.24
SPG11-217ENST00000559511 ZCRB1Q8TBF4 217 aaKnown RBP13.54□□□□□ -0.24
SPG11-217ENST00000559511 STRN4Q9NRL3 753 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 HYPKQ9NX55 129 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 COL14A1Q05707 1796 aaKnown RBP13.54□□□□□ -0.24
SPG11-217ENST00000559511 PAPPAQ13219 1627 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 ALDH1L1O75891 902 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 CHMLP26374 656 aa13.54□□□□□ -0.24
SPG11-217ENST00000559511 ZNF496Q96IT1 587 aaPredicted RBP13.54□□□□□ -0.24
SPG11-217ENST00000559511 DDX21Q9NR30 783 aaKnown RBP eCLIP13.54□□□□□ -0.24
SPG11-217ENST00000559511 PCDH11XQ9BZA7 1347 aa13.53□□□□□ -0.24
SPG11-217ENST00000559511 PCDH11YQ9BZA8 1340 aa13.53□□□□□ -0.24
SPG11-217ENST00000559511 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
SPG11-217ENST00000559511 CABP4P57796 275 aa13.53□□□□□ -0.24
SPG11-217ENST00000559511 KIF1BPQ96EK5 621 aa13.53□□□□□ -0.24
SPG11-217ENST00000559511 COL16A1Q07092 1604 aaPredicted RBP13.53□□□□□ -0.24
SPG11-217ENST00000559511 IL2RBP14784 551 aa13.52□□□□□ -0.24
SPG11-217ENST00000559511 EVA1CP58658 441 aa13.52□□□□□ -0.24
SPG11-217ENST00000559511 MTX1Q13505 466 aa13.52□□□□□ -0.24
SPG11-217ENST00000559511 PI4K2BQ8TCG2 481 aa13.52□□□□□ -0.24
SPG11-217ENST00000559511 C9orf78Q9NZ63 289 aaPredicted RBP13.52□□□□□ -0.24
SPG11-217ENST00000559511 AIMP1Q12904 312 aaKnown RBP13.52□□□□□ -0.25
SPG11-217ENST00000559511 AFDNP55196 1824 aaKnown RBP13.51□□□□□ -0.25
SPG11-217ENST00000559511 DDX11L8A8MPP1 907 aa13.51□□□□□ -0.25
SPG11-217ENST00000559511 TRAK2O60296 914 aa13.51□□□□□ -0.25
SPG11-217ENST00000559511 TTC5Q8N0Z6 440 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms