RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TATP17735 454 aaPredicted RBP10.5□□□□□ -0.73
VPS13C-208ENST00000559119 EDARADDQ8WWZ3 215 aa10.5□□□□□ -0.73
VPS13C-208ENST00000559119 ZCCHC2Q9C0B9 1178 aaKnown RBP10.5□□□□□ -0.73
VPS13C-208ENST00000559119 RRAGCQ9HB90 399 aa10.5□□□□□ -0.73
VPS13C-208ENST00000559119 SHISA8B8ZZ34 492 aa10.49□□□□□ -0.73
VPS13C-208ENST00000559119 ATXN7O15265 892 aaPredicted RBP10.49□□□□□ -0.73
VPS13C-208ENST00000559119 CTBSQ01459 385 aa10.49□□□□□ -0.73
VPS13C-208ENST00000559119 NCOA4Q13772 614 aa10.49□□□□□ -0.73
VPS13C-208ENST00000559119 IQSEC3Q9UPP2 1182 aaPredicted RBP10.49□□□□□ -0.73
VPS13C-208ENST00000559119 A0A1W2PNR3 127 aa10.48□□□□□ -0.73
VPS13C-208ENST00000559119 C2CD2LO14523 706 aa10.48□□□□□ -0.73
VPS13C-208ENST00000559119 SUZ12Q15022 739 aaKnown RBP10.48□□□□□ -0.73
VPS13C-208ENST00000559119 C1orf229Q6ZS94 237 aaPredicted RBP10.48□□□□□ -0.73
VPS13C-208ENST00000559119 DCAF5Q96JK2 942 aa10.48□□□□□ -0.73
VPS13C-208ENST00000559119 DNAAF2Q9NVR5 837 aaKnown RBP10.48□□□□□ -0.73
VPS13C-208ENST00000559119 ZDHHC3Q9NYG2 299 aa10.48□□□□□ -0.73
VPS13C-208ENST00000559119 GJA3Q9Y6H8 435 aa10.48□□□□□ -0.73
VPS13C-208ENST00000559119 USP17L5A8MUK1 530 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 AMPD1P23109 780 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 SNRPNP63162 240 aaKnown RBP10.47□□□□□ -0.73
VPS13C-208ENST00000559119 DEPDC4Q8N2C3 294 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS13C-208ENST00000559119 GGA1Q9UJY5 639 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 MKL2Q9ULH7 1088 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 USP3Q9Y6I4 520 aa10.47□□□□□ -0.73
VPS13C-208ENST00000559119 SLCO4C1Q6ZQN7 724 aa10.46□□□□□ -0.73
VPS13C-208ENST00000559119 ZNF358Q9NW07 568 aa10.46□□□□□ -0.73
VPS13C-208ENST00000559119 DCDC2BA2VCK2 349 aa10.45□□□□□ -0.74
VPS13C-208ENST00000559119 BICDL1Q6ZP65 573 aa10.45□□□□□ -0.74
VPS13C-208ENST00000559119 ZNF295-AS1Q8N0V1 137 aa10.45□□□□□ -0.74
VPS13C-208ENST00000559119 KHNYNO15037 678 aaKnown RBP10.44□□□□□ -0.74
VPS13C-208ENST00000559119 ARAFP10398 606 aa10.44□□□□□ -0.74
VPS13C-208ENST00000559119 PLA2G4EQ3MJ16 856 aa10.44□□□□□ -0.74
VPS13C-208ENST00000559119 TRIM50Q86XT4 487 aa10.44□□□□□ -0.74
VPS13C-208ENST00000559119 ZIC5Q96T25 663 aa10.44□□□□□ -0.74
VPS13C-208ENST00000559119 SCHIP1Q9P0W5 487 aaPredicted RBP10.44□□□□□ -0.74
VPS13C-208ENST00000559119 PARP3Q9Y6F1 533 aa10.44□□□□□ -0.74
VPS13C-208ENST00000559119 POM121CA8CG34 1229 aa10.43□□□□□ -0.74
VPS13C-208ENST00000559119 MAPTP10636 758 aaKnown RBP10.43□□□□□ -0.74
VPS13C-208ENST00000559119 MSTNO14793 375 aa10.42□□□□□ -0.74
VPS13C-208ENST00000559119 TNP2Q05952 138 aa10.42□□□□□ -0.74
VPS13C-208ENST00000559119 NEURL1BA8MQ27 555 aa10.41□□□□□ -0.74
VPS13C-208ENST00000559119 CD33P20138 364 aa10.41□□□□□ -0.74
VPS13C-208ENST00000559119 ATP1A2P50993 1020 aa10.41□□□□□ -0.74
VPS13C-208ENST00000559119 HDGFL1Q5TGJ6 251 aa10.41□□□□□ -0.74
VPS13C-208ENST00000559119 L3MBTL2Q969R5 705 aa10.41□□□□□ -0.74
VPS13C-208ENST00000559119 FAM157BP0CG42 384 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 EPXP11678 715 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 TXLNAP40222 546 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 FAM182BQ5T319 152 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 PLEKHM2Q8IWE5 1019 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 ADAMTS19Q8TE59 1207 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 ZNF232Q9UNY5 417 aa10.4□□□□□ -0.74
VPS13C-208ENST00000559119 USP17L3A6NCW0 530 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 USP17L4A6NCW7 530 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 PIK3R2O00459 728 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 NOS2P35228 1153 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 TEAD4Q15561 434 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 USP17L2Q6R6M4 530 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 USP17L1Q7RTZ2 530 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 SLC9A9Q8IVB4 645 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 TNS4Q8IZW8 715 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 TPCN2Q8NHX9 752 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 ZDHHC1Q8WTX9 485 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 BTBD6Q96KE9 485 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 NEUROD4Q9HD90 331 aa10.39□□□□□ -0.75
VPS13C-208ENST00000559119 ADH6P28332 368 aa10.38□□□□□ -0.75
VPS13C-208ENST00000559119 TBCELQ5QJ74 424 aa10.38□□□□□ -0.75
VPS13C-208ENST00000559119 SAMD5Q5TGI4 173 aa10.38□□□□□ -0.75
VPS13C-208ENST00000559119 ALYREFQ86V81 257 aaKnown RBP10.38□□□□□ -0.75
VPS13C-208ENST00000559119 PRR12Q9ULL5 1215 aa10.38□□□□□ -0.75
VPS13C-208ENST00000559119 ATP9BO43861 1147 aa10.37□□□□□ -0.75
VPS13C-208ENST00000559119 EPHA4P54764 986 aa10.37□□□□□ -0.75
VPS13C-208ENST00000559119 CCDC102BQ68D86 513 aa10.37□□□□□ -0.75
VPS13C-208ENST00000559119 SPOCK3Q9BQ16 436 aa10.37□□□□□ -0.75
VPS13C-208ENST00000559119 AVENQ9NQS1 362 aaPredicted RBP10.37□□□□□ -0.75
VPS13C-208ENST00000559119 MARK1Q9P0L2 795 aa10.37□□□□□ -0.75
VPS13C-208ENST00000559119 SERTM1A2A2V5 107 aa10.36□□□□□ -0.75
VPS13C-208ENST00000559119 GRIN2CQ14957 1233 aa10.36□□□□□ -0.75
VPS13C-208ENST00000559119 UCN2Q96RP3 112 aa10.36□□□□□ -0.75
VPS13C-208ENST00000559119 HCN2Q9UL51 889 aa10.36□□□□□ -0.75
VPS13C-208ENST00000559119 GNB5O14775 395 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 ZBTB7BO15156 539 aaPredicted RBP10.35□□□□□ -0.75
VPS13C-208ENST00000559119 LAMC2Q13753 1193 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 LINC00114Q6XXX2 140 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 LRRC69Q6ZNQ3 347 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 KIAA1024Q9UPX6 916 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 CHMP3Q9Y3E7 222 aa10.35□□□□□ -0.75
VPS13C-208ENST00000559119 RBM19Q9Y4C8 960 aaKnown RBP10.35□□□□□ -0.75
VPS13C-208ENST00000559119 LOC100996750A0A140TA64 210 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 EML1O00423 815 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 ITGB2P05107 769 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 HOXB4P17483 251 aaPredicted RBP10.34□□□□□ -0.75
VPS13C-208ENST00000559119 CLDN10P78369 228 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 CHSY3Q70JA7 882 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 LARGE2Q8N3Y3 721 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 OGFOD1Q8N543 542 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 KRTAP4-6Q9BYQ5 205 aa10.34□□□□□ -0.75
VPS13C-208ENST00000559119 MKRN1Q9UHC7 482 aaKnown RBP10.34□□□□□ -0.75
VPS13C-208ENST00000559119 GPC6Q9Y625 555 aaPredicted RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms