RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 CASZ1Q86V15 1759 aa16.06■□□□□ 0.16
TPM1-216ENST00000558910 LY75O60449 1722 aa16.06■□□□□ 0.16
TPM1-216ENST00000558910 RNMTO43148 476 aaKnown RBP16.06■□□□□ 0.16
TPM1-216ENST00000558910 PTGER2P43116 358 aa16.06■□□□□ 0.16
TPM1-216ENST00000558910 SLC39A6Q13433 755 aa16.06■□□□□ 0.16
TPM1-216ENST00000558910 AMIGO3Q86WK7 504 aa16.05■□□□□ 0.16
TPM1-216ENST00000558910 PHACTR3Q96KR7 559 aa16.05■□□□□ 0.16
TPM1-216ENST00000558910 TMEM106CQ9BVX2 250 aa16.05■□□□□ 0.16
TPM1-216ENST00000558910 GNPATO15228 680 aa16.04■□□□□ 0.16
TPM1-216ENST00000558910 SLC4A9Q96Q91 983 aa16.04■□□□□ 0.16
TPM1-216ENST00000558910 POLD1P28340 1107 aa16.03■□□□□ 0.16
TPM1-216ENST00000558910 FHDC1Q9C0D6 1143 aaPredicted RBP16.03■□□□□ 0.16
TPM1-216ENST00000558910 TRIM35Q9UPQ4 493 aa16.03■□□□□ 0.16
TPM1-216ENST00000558910 C7P10643 843 aa16.02■□□□□ 0.16
TPM1-216ENST00000558910 ZEB1P37275 1124 aaPredicted RBP16.02■□□□□ 0.16
TPM1-216ENST00000558910 ZNF467Q7Z7K2 595 aaPredicted RBP16.02■□□□□ 0.16
TPM1-216ENST00000558910 ARXQ96QS3 562 aa16.02■□□□□ 0.16
TPM1-216ENST00000558910 RSPH6AQ9H0K4 717 aa16.02■□□□□ 0.16
TPM1-216ENST00000558910 SLC52A2Q9HAB3 445 aa16.02■□□□□ 0.16
TPM1-216ENST00000558910 C5P01031 1676 aa16.02■□□□□ 0.15
TPM1-216ENST00000558910 TUBGCP6Q96RT7 1819 aa16.01■□□□□ 0.15
TPM1-216ENST00000558910 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.01■□□□□ 0.15
TPM1-216ENST00000558910 POTEB2H3BUK9 544 aa16.01■□□□□ 0.15
TPM1-216ENST00000558910 GAS2L2Q8NHY3 880 aa16.01■□□□□ 0.15
TPM1-216ENST00000558910 GNAT3A8MTJ3 354 aa16■□□□□ 0.15
TPM1-216ENST00000558910 TEFQ10587 303 aa15.99■□□□□ 0.15
TPM1-216ENST00000558910 DCTN1Q14203 1278 aa15.99■□□□□ 0.15
TPM1-216ENST00000558910 C4BP0C0L5 1744 aa15.99■□□□□ 0.15
TPM1-216ENST00000558910 MAP3K5Q99683 1374 aa15.99■□□□□ 0.15
TPM1-216ENST00000558910 PLEKHG2Q9H7P9 1386 aa15.99■□□□□ 0.15
TPM1-216ENST00000558910 MCM10Q7L590 875 aa15.98■□□□□ 0.15
TPM1-216ENST00000558910 IL17REQ8NFR9 667 aa15.98■□□□□ 0.15
TPM1-216ENST00000558910 SLC16A10Q8TF71 515 aa15.98■□□□□ 0.15
TPM1-216ENST00000558910 DNAJC10Q8IXB1 793 aa15.97■□□□□ 0.15
TPM1-216ENST00000558910 SYT17Q9BSW7 474 aa15.97■□□□□ 0.15
TPM1-216ENST00000558910 WWC3Q9ULE0 1092 aa15.97■□□□□ 0.15
TPM1-216ENST00000558910 RTCBQ9Y3I0 505 aaKnown RBP15.97■□□□□ 0.15
TPM1-216ENST00000558910 TAF1LQ8IZX4 1826 aa15.96■□□□□ 0.15
TPM1-216ENST00000558910 NEFMP07197 916 aa15.96■□□□□ 0.15
TPM1-216ENST00000558910 RALBP1Q15311 655 aa15.96■□□□□ 0.15
TPM1-216ENST00000558910 TTC5Q8N0Z6 440 aa15.96■□□□□ 0.15
TPM1-216ENST00000558910 FLAD1Q8NFF5 587 aa15.96■□□□□ 0.15
TPM1-216ENST00000558910 RTF1Q92541 710 aaKnown RBP15.96■□□□□ 0.15
TPM1-216ENST00000558910 FCHSD2O94868 740 aa15.95■□□□□ 0.14
TPM1-216ENST00000558910 CRKLP46109 303 aaKnown RBP15.95■□□□□ 0.14
TPM1-216ENST00000558910 TRAPPC3LQ5T215 181 aa15.95■□□□□ 0.14
TPM1-216ENST00000558910 IFFO2Q5TF58 517 aa15.95■□□□□ 0.14
TPM1-216ENST00000558910 SCN11AQ9UI33 1791 aa15.95■□□□□ 0.14
TPM1-216ENST00000558910 POTEFA5A3E0 1075 aa15.94■□□□□ 0.14
TPM1-216ENST00000558910 KCNQ3O43525 872 aa15.94■□□□□ 0.14
TPM1-216ENST00000558910 SSFA2P28290 1259 aa15.94■□□□□ 0.14
TPM1-216ENST00000558910 ZNF330Q9Y3S2 320 aaPredicted RBP15.94■□□□□ 0.14
TPM1-216ENST00000558910 RFC4P35249 363 aa15.93■□□□□ 0.14
TPM1-216ENST00000558910 CCDC146Q8IYE0 955 aa15.93■□□□□ 0.14
TPM1-216ENST00000558910 NLGN2Q8NFZ4 835 aa15.93■□□□□ 0.14
TPM1-216ENST00000558910 ARHGEF1Q92888 912 aaKnown RBP15.93■□□□□ 0.14
TPM1-216ENST00000558910 SRP68Q9UHB9 627 aaKnown RBP15.93■□□□□ 0.14
TPM1-216ENST00000558910 MYBBP1AQ9BQG0 1328 aaKnown RBP15.93■□□□□ 0.14
TPM1-216ENST00000558910 BTBD11A6QL63 1104 aa15.92■□□□□ 0.14
TPM1-216ENST00000558910 HMGB2P26583 209 aaKnown RBP15.92■□□□□ 0.14
TPM1-216ENST00000558910 THUMPD2Q9BTF0 503 aaKnown RBP15.92■□□□□ 0.14
TPM1-216ENST00000558910 MIS18AQ9NYP9 233 aa15.92■□□□□ 0.14
TPM1-216ENST00000558910 MAPK8IP3Q9UPT6 1336 aa15.92■□□□□ 0.14
TPM1-216ENST00000558910 CANXP27824 592 aaKnown RBP15.91■□□□□ 0.14
TPM1-216ENST00000558910 NEUROD2Q15784 382 aa15.91■□□□□ 0.14
TPM1-216ENST00000558910 ZNF496Q96IT1 587 aaPredicted RBP15.91■□□□□ 0.14
TPM1-216ENST00000558910 RRP7AQ9Y3A4 280 aaKnown RBP15.91■□□□□ 0.14
TPM1-216ENST00000558910 RPS6KA4O75676 772 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 PSEN1P49768 467 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 GPR162Q16538 588 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 QSER1Q2KHR3 1735 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 UBR3Q6ZT12 1888 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 CNTNAP4Q9C0A0 1308 aa15.9■□□□□ 0.14
TPM1-216ENST00000558910 VIRMAQ69YN4 1812 aaKnown RBP15.89■□□□□ 0.13
TPM1-216ENST00000558910 SENP3-EIF4A1A0A087X0R7 540 aa15.89■□□□□ 0.13
TPM1-216ENST00000558910 ZNF316A6NFI3 1004 aaPredicted RBP15.89■□□□□ 0.13
TPM1-216ENST00000558910 MMP10P09238 476 aa15.89■□□□□ 0.13
TPM1-216ENST00000558910 WDR43Q15061 677 aaKnown RBP eCLIP15.89■□□□□ 0.13
TPM1-216ENST00000558910 RC3H1Q5TC82 1133 aaKnown RBP15.89■□□□□ 0.13
TPM1-216ENST00000558910 INTS5Q6P9B9 1019 aaKnown RBP15.89■□□□□ 0.13
TPM1-216ENST00000558910 ZNF790Q6PG37 636 aa15.89■□□□□ 0.13
TPM1-216ENST00000558910 CCDC87Q9NVE4 849 aa15.89■□□□□ 0.13
TPM1-216ENST00000558910 COLQQ9Y215 455 aaPredicted RBP15.89■□□□□ 0.13
TPM1-216ENST00000558910 ZBTB1Q9Y2K1 713 aa15.89■□□□□ 0.13
TPM1-216ENST00000558910 CYP19A1P11511 503 aaPredicted RBP15.88■□□□□ 0.13
TPM1-216ENST00000558910 PIP4K2AP48426 406 aaPredicted RBP15.88■□□□□ 0.13
TPM1-216ENST00000558910 PRKRIP1Q9H875 184 aaPredicted RBP15.88■□□□□ 0.13
TPM1-216ENST00000558910 MRC1P22897 1456 aa15.88■□□□□ 0.13
TPM1-216ENST00000558910 PRAMEF22A3QJZ6 481 aa15.87■□□□□ 0.13
TPM1-216ENST00000558910 NFE2L2Q16236 605 aa15.87■□□□□ 0.13
TPM1-216ENST00000558910 IER5LQ5T953 404 aa15.87■□□□□ 0.13
TPM1-216ENST00000558910 PLEKHF1Q96S99 279 aa15.87■□□□□ 0.13
TPM1-216ENST00000558910 KCPQ6ZWJ8 1503 aa15.87■□□□□ 0.13
TPM1-216ENST00000558910 PDAP1Q13442 181 aaKnown RBP15.86■□□□□ 0.13
TPM1-216ENST00000558910 USPL1Q5W0Q7 1092 aa15.86■□□□□ 0.13
TPM1-216ENST00000558910 FMNL2Q96PY5 1086 aa15.86■□□□□ 0.13
TPM1-216ENST00000558910 MYH14Q7Z406 1995 aaKnown RBP15.86■□□□□ 0.13
TPM1-216ENST00000558910 TJP1Q07157 1748 aa15.85■□□□□ 0.13
TPM1-216ENST00000558910 ZPR1O75312 459 aa15.85■□□□□ 0.13
TPM1-216ENST00000558910 SEC24BO95487 1268 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms