RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 RNMTO43148 476 aaKnown RBP13.56□□□□□ -0.24
USP3-207ENST00000558218 RPS6KA4O75676 772 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 PPP2R1AP30153 589 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 TRAPPC3LQ5T215 181 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 IFNL1Q8IU54 200 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 GAS2L2Q8NHY3 880 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 SLC4A9Q96Q91 983 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 UBR3Q6ZT12 1888 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 CNTNAP4Q9C0A0 1308 aa13.56□□□□□ -0.24
USP3-207ENST00000558218 COL3A1P02461 1466 aaPredicted RBP13.55□□□□□ -0.24
USP3-207ENST00000558218 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
USP3-207ENST00000558218 GNPATO15228 680 aa13.55□□□□□ -0.24
USP3-207ENST00000558218 LGR6Q9HBX8 967 aa13.55□□□□□ -0.24
USP3-207ENST00000558218 FCHSD2O94868 740 aa13.54□□□□□ -0.24
USP3-207ENST00000558218 YY1P25490 414 aa13.54□□□□□ -0.24
USP3-207ENST00000558218 NLGN1Q8N2Q7 840 aa13.54□□□□□ -0.24
USP3-207ENST00000558218 PCDHB8Q9UN66 801 aa13.54□□□□□ -0.24
USP3-207ENST00000558218 GNAT3A8MTJ3 354 aa13.53□□□□□ -0.24
USP3-207ENST00000558218 PTCD1O75127 700 aaKnown RBP13.53□□□□□ -0.24
USP3-207ENST00000558218 PHF14O94880 888 aa13.53□□□□□ -0.24
USP3-207ENST00000558218 AMIGO3Q86WK7 504 aa13.53□□□□□ -0.24
USP3-207ENST00000558218 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
USP3-207ENST00000558218 CNGB1Q14028 1251 aaPredicted RBP13.52□□□□□ -0.25
USP3-207ENST00000558218 PELP1Q8IZL8 1130 aaKnown RBP13.52□□□□□ -0.25
USP3-207ENST00000558218 ADAMTS7Q9UKP4 1686 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 MRC1P22897 1456 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 GRIN3BO60391 1043 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 RFC4P35249 363 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 GPR162Q16538 588 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 MSL1Q68DK7 614 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 LHX8Q68G74 356 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 ARHGEF1Q92888 912 aaKnown RBP13.51□□□□□ -0.25
USP3-207ENST00000558218 RSPH6AQ9H0K4 717 aa13.51□□□□□ -0.25
USP3-207ENST00000558218 U2AF1L5P0DN76 240 aaPredicted RBP13.5□□□□□ -0.25
USP3-207ENST00000558218 CRKLP46109 303 aaKnown RBP13.5□□□□□ -0.25
USP3-207ENST00000558218 U2AF1Q01081 240 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP3-207ENST00000558218 IL17REQ8NFR9 667 aa13.5□□□□□ -0.25
USP3-207ENST00000558218 COL5A3P25940 1745 aaPredicted RBP13.5□□□□□ -0.25
USP3-207ENST00000558218 CICQ96RK0 1608 aaPredicted RBP13.5□□□□□ -0.25
USP3-207ENST00000558218 HTATSF1O43719 755 aaKnown RBP13.49□□□□□ -0.25
USP3-207ENST00000558218 PRKAR2BP31323 418 aa13.49□□□□□ -0.25
USP3-207ENST00000558218 TEFQ10587 303 aa13.49□□□□□ -0.25
USP3-207ENST00000558218 TEX13AQ9BXU3 409 aaPredicted RBP13.49□□□□□ -0.25
USP3-207ENST00000558218 BMP2KQ9NSY1 1161 aaPredicted RBP13.49□□□□□ -0.25
USP3-207ENST00000558218 ATMINO43313 823 aaPredicted RBP13.48□□□□□ -0.25
USP3-207ENST00000558218 ATN1P54259 1190 aaPredicted RBP13.48□□□□□ -0.25
USP3-207ENST00000558218 RALBP1Q15311 655 aa13.48□□□□□ -0.25
USP3-207ENST00000558218 INTS5Q6P9B9 1019 aaKnown RBP13.48□□□□□ -0.25
USP3-207ENST00000558218 TTC5Q8N0Z6 440 aa13.48□□□□□ -0.25
USP3-207ENST00000558218 NLGN2Q8NFZ4 835 aa13.48□□□□□ -0.25
USP3-207ENST00000558218 PHACTR3Q96KR7 559 aa13.48□□□□□ -0.25
USP3-207ENST00000558218 PNNQ9H307 717 aaKnown RBP13.48□□□□□ -0.25
USP3-207ENST00000558218 MYH14Q7Z406 1995 aaKnown RBP13.48□□□□□ -0.25
USP3-207ENST00000558218 CHD4Q14839 1912 aa13.48□□□□□ -0.25
USP3-207ENST00000558218 CEMIPQ8WUJ3 1361 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 MMP10P09238 476 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 CYP19A1P11511 503 aaPredicted RBP13.47□□□□□ -0.25
USP3-207ENST00000558218 GYS1P13807 737 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 SLC39A6Q13433 755 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 SMIM5Q71RC9 77 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 CCDC87Q9NVE4 849 aa13.47□□□□□ -0.25
USP3-207ENST00000558218 VIRMAQ69YN4 1812 aaKnown RBP13.47□□□□□ -0.25
USP3-207ENST00000558218 STARD3NLO95772 234 aa13.46□□□□□ -0.25
USP3-207ENST00000558218 NEFMP07197 916 aa13.46□□□□□ -0.25
USP3-207ENST00000558218 TGFB2P61812 414 aa13.46□□□□□ -0.25
USP3-207ENST00000558218 ZNF790Q6PG37 636 aa13.46□□□□□ -0.25
USP3-207ENST00000558218 DNAJC10Q8IXB1 793 aa13.46□□□□□ -0.25
USP3-207ENST00000558218 IFFO2Q5TF58 517 aa13.45□□□□□ -0.26
USP3-207ENST00000558218 RTF1Q92541 710 aaKnown RBP13.45□□□□□ -0.26
USP3-207ENST00000558218 USP42Q9H9J4 1324 aaKnown RBP13.44□□□□□ -0.26
USP3-207ENST00000558218 ZPR1O75312 459 aa13.44□□□□□ -0.26
USP3-207ENST00000558218 PARP3Q9Y6F1 533 aa13.44□□□□□ -0.26
USP3-207ENST00000558218 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
USP3-207ENST00000558218 SOS1Q07889 1333 aaPredicted RBP13.43□□□□□ -0.26
USP3-207ENST00000558218 A0A087WZG4 1122 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 BTBD11A6QL63 1104 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 TJP1Q07157 1748 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 ASTLQ6HA08 431 aaPredicted RBP13.43□□□□□ -0.26
USP3-207ENST00000558218 FMNL2Q96PY5 1086 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 NARFQ9UHQ1 456 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 HEG1Q9ULI3 1381 aa13.43□□□□□ -0.26
USP3-207ENST00000558218 YBX3P16989 372 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP3-207ENST00000558218 TM4SF1P30408 202 aa13.42□□□□□ -0.26
USP3-207ENST00000558218 ZNF496Q96IT1 587 aaPredicted RBP13.42□□□□□ -0.26
USP3-207ENST00000558218 UBR2Q8IWV8 1755 aa13.42□□□□□ -0.26
USP3-207ENST00000558218 TTLL13PA6NNM8 815 aa13.41□□□□□ -0.26
USP3-207ENST00000558218 EIF5P55010 431 aaKnown RBP13.41□□□□□ -0.26
USP3-207ENST00000558218 DDX10Q13206 875 aaKnown RBP13.41□□□□□ -0.26
USP3-207ENST00000558218 SIPA1L3O60292 1781 aaPredicted RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 TIE1P35590 1138 aa13.4□□□□□ -0.26
USP3-207ENST00000558218 ZEB1P37275 1124 aaPredicted RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 IL6STP40189 918 aaPredicted RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 TAF7Q15545 349 aaPredicted RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 ZNF784Q8NCA9 323 aaPredicted RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 PNISRQ8TF01 805 aaKnown RBP13.4□□□□□ -0.26
USP3-207ENST00000558218 PLEKHF1Q96S99 279 aa13.4□□□□□ -0.26
USP3-207ENST00000558218 TMEM106CQ9BVX2 250 aa13.4□□□□□ -0.26
USP3-207ENST00000558218 ZBTB1Q9Y2K1 713 aa13.4□□□□□ -0.26
USP3-207ENST00000558218 KIF13BQ9NQT8 1826 aa13.4□□□□□ -0.26
USP3-207ENST00000558218 USPL1Q5W0Q7 1092 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms