RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 CCER1Q8TC90 406 aaPredicted RBP10.52□□□□□ -0.73
SPG11-205ENST00000558080 COG3Q96JB2 828 aa10.52□□□□□ -0.73
SPG11-205ENST00000558080 ANKRD36BQ8N2N9 1353 aa10.52□□□□□ -0.73
SPG11-205ENST00000558080 EXOC5O00471 708 aa10.51□□□□□ -0.73
SPG11-205ENST00000558080 ITGBL1O95965 494 aaPredicted RBP10.51□□□□□ -0.73
SPG11-205ENST00000558080 R3HDM1Q15032 1099 aaKnown RBP10.51□□□□□ -0.73
SPG11-205ENST00000558080 MARCH10Q8NA82 808 aaPredicted RBP10.51□□□□□ -0.73
SPG11-205ENST00000558080 ANKRD24Q8TF21 1146 aa10.51□□□□□ -0.73
SPG11-205ENST00000558080 LTV1Q96GA3 475 aaPredicted RBP10.51□□□□□ -0.73
SPG11-205ENST00000558080 CDCA7Q9BWT1 371 aaPredicted RBP10.51□□□□□ -0.73
SPG11-205ENST00000558080 CCDC7Q96M83 1385 aa10.51□□□□□ -0.73
SPG11-205ENST00000558080 RGPD3A6NKT7 1758 aaPredicted RBP10.5□□□□□ -0.73
SPG11-205ENST00000558080 RGPD4Q7Z3J3 1758 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 C11orf95C9JLR9 678 aaPredicted RBP10.5□□□□□ -0.73
SPG11-205ENST00000558080 CDCA8Q53HL2 280 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 C6orf132Q5T0Z8 1188 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 PTF1AQ7RTS3 328 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 GGNBP2Q9H3C7 697 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 LRP5O75197 1615 aa10.5□□□□□ -0.73
SPG11-205ENST00000558080 SRCAPQ6ZRS2 3230 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 SOWAHBA6NEL2 793 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 DPYSL4O14531 572 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 FYB1O15117 783 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 IP6K1Q92551 441 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 KIAA1468Q9P260 1216 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 MAP3K19Q56UN5 1328 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 BTAF1O14981 1849 aa10.49□□□□□ -0.73
SPG11-205ENST00000558080 AMPHP49418 695 aa10.48□□□□□ -0.73
SPG11-205ENST00000558080 BCAMP50895 628 aa10.48□□□□□ -0.73
SPG11-205ENST00000558080 NYAP1Q6ZVC0 841 aa10.48□□□□□ -0.73
SPG11-205ENST00000558080 ZFRQ96KR1 1074 aaKnown RBP10.48□□□□□ -0.73
SPG11-205ENST00000558080 POLR3GLQ9BT43 218 aa10.48□□□□□ -0.73
SPG11-205ENST00000558080 PARD3Q8TEW0 1356 aa10.48□□□□□ -0.73
SPG11-205ENST00000558080 NHSQ6T4R5 1651 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 IL2RBP14784 551 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 HOXC9P31274 260 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 RRS1Q15050 365 aaKnown RBP10.47□□□□□ -0.73
SPG11-205ENST00000558080 NBPF14Q5TI25 921 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 TNS2Q63HR2 1409 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 SHANK3Q9BYB0 1731 aa10.47□□□□□ -0.73
SPG11-205ENST00000558080 ACSBG1Q96GR2 724 aa10.46□□□□□ -0.73
SPG11-205ENST00000558080 CARD14Q9BXL6 1004 aa10.46□□□□□ -0.73
SPG11-205ENST00000558080 ANKRD26Q9UPS8 1709 aa10.46□□□□□ -0.74
SPG11-205ENST00000558080 TRIM6-TRIM34B2RNG4 842 aa10.45□□□□□ -0.74
SPG11-205ENST00000558080 PLSCR1O15162 318 aa10.45□□□□□ -0.74
SPG11-205ENST00000558080 KCNQ2O43526 872 aa10.45□□□□□ -0.74
SPG11-205ENST00000558080 HSPA5P11021 654 aaKnown RBP10.45□□□□□ -0.74
SPG11-205ENST00000558080 DOT1LQ8TEK3 1739 aa10.44□□□□□ -0.74
SPG11-205ENST00000558080 BCL9O00512 1426 aa10.44□□□□□ -0.74
SPG11-205ENST00000558080 NSD3Q9BZ95 1437 aa10.44□□□□□ -0.74
SPG11-205ENST00000558080 EIF4G2P78344 907 aaKnown RBP eCLIP10.44□□□□□ -0.74
SPG11-205ENST00000558080 DDX54Q8TDD1 881 aaKnown RBP10.44□□□□□ -0.74
SPG11-205ENST00000558080 IRX2Q9BZI1 471 aaPredicted RBP10.44□□□□□ -0.74
SPG11-205ENST00000558080 SEPT9Q9UHD8 586 aaPredicted RBP10.43□□□□□ -0.74
SPG11-205ENST00000558080 RTL1A6NKG5 1358 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 NBPF6Q5VWK0 638 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 USHBP1Q8N6Y0 703 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 DDX12PQ92771 950 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 NBPF4Q96M43 638 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 ITGB4P16144 1822 aa10.42□□□□□ -0.74
SPG11-205ENST00000558080 TXNRD1Q16881 649 aa10.41□□□□□ -0.74
SPG11-205ENST00000558080 HSP90AB2PQ58FF8 381 aa10.41□□□□□ -0.74
SPG11-205ENST00000558080 BBXQ8WY36 941 aaPredicted RBP10.41□□□□□ -0.74
SPG11-205ENST00000558080 WBP1LQ9NX94 342 aa10.41□□□□□ -0.74
SPG11-205ENST00000558080 CASZ1Q86V15 1759 aa10.41□□□□□ -0.74
SPG11-205ENST00000558080 MEGF6O75095 1541 aa10.4□□□□□ -0.74
SPG11-205ENST00000558080 PPM1GO15355 546 aaPredicted RBP10.4□□□□□ -0.74
SPG11-205ENST00000558080 PDIA6Q15084 440 aa10.4□□□□□ -0.74
SPG11-205ENST00000558080 ZCRB1Q8TBF4 217 aaKnown RBP10.4□□□□□ -0.74
SPG11-205ENST00000558080 EMILIN1Q9Y6C2 1016 aa10.4□□□□□ -0.74
SPG11-205ENST00000558080 SMG6Q86US8 1419 aaKnown RBP10.4□□□□□ -0.75
SPG11-205ENST00000558080 TUBGCP6Q96RT7 1819 aa10.4□□□□□ -0.75
SPG11-205ENST00000558080 INSRP06213 1382 aa10.39□□□□□ -0.75
SPG11-205ENST00000558080 FLT4P35916 1363 aa10.39□□□□□ -0.75
SPG11-205ENST00000558080 CGNL1Q0VF96 1302 aa10.39□□□□□ -0.75
SPG11-205ENST00000558080 LY75O60449 1722 aa10.39□□□□□ -0.75
SPG11-205ENST00000558080 TNNT2P45379 298 aaPredicted RBP10.38□□□□□ -0.75
SPG11-205ENST00000558080 PRIM1P49642 420 aaKnown RBP10.38□□□□□ -0.75
SPG11-205ENST00000558080 RAPGEF4Q8WZA2 1011 aa10.38□□□□□ -0.75
SPG11-205ENST00000558080 SYTL4Q96C24 671 aaPredicted RBP10.38□□□□□ -0.75
SPG11-205ENST00000558080 PDGFDQ9GZP0 370 aaPredicted RBP10.38□□□□□ -0.75
SPG11-205ENST00000558080 PANK3Q9H999 370 aa10.38□□□□□ -0.75
SPG11-205ENST00000558080 STK32BQ9NY57 414 aa10.38□□□□□ -0.75
SPG11-205ENST00000558080 TATP17735 454 aaPredicted RBP10.37□□□□□ -0.75
SPG11-205ENST00000558080 NBR1Q14596 966 aa10.37□□□□□ -0.75
SPG11-205ENST00000558080 PKD1L3Q7Z443 1732 aa10.37□□□□□ -0.75
SPG11-205ENST00000558080 SPON1Q9HCB6 807 aa10.37□□□□□ -0.75
SPG11-205ENST00000558080 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.37□□□□□ -0.75
SPG11-205ENST00000558080 TSR3Q9UJK0 312 aaKnown RBP10.37□□□□□ -0.75
SPG11-205ENST00000558080 KIF24Q5T7B8 1368 aa10.37□□□□□ -0.75
SPG11-205ENST00000558080 TAF1LQ8IZX4 1826 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 SPDYE16A6NNV3 312 aaPredicted RBP10.36□□□□□ -0.75
SPG11-205ENST00000558080 KCNC4Q03721 635 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 SLC15A2Q16348 729 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 LRCH3Q96II8 777 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 POLKQ9UBT6 870 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 PAPPAQ13219 1627 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 QSER1Q2KHR3 1735 aa10.36□□□□□ -0.75
SPG11-205ENST00000558080 MAP3K7O43318 606 aa10.35□□□□□ -0.75
SPG11-205ENST00000558080 ZBTB7AO95365 584 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms