RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 CHPF2Q9P2E5 772 aa21.52■■□□□ 1.04
SNX1-203ENST00000558040 PTPRCP08575 1304 aa21.52■■□□□ 1.03
SNX1-203ENST00000558040 ERBB4Q15303 1308 aa21.52■■□□□ 1.03
SNX1-203ENST00000558040 API5Q9BZZ5 524 aaKnown RBP21.51■■□□□ 1.03
SNX1-203ENST00000558040 USP16Q9Y5T5 823 aa21.51■■□□□ 1.03
SNX1-203ENST00000558040 STARD3NLO95772 234 aa21.5■■□□□ 1.03
SNX1-203ENST00000558040 FTSJ3Q8IY81 847 aaKnown RBP21.5■■□□□ 1.03
SNX1-203ENST00000558040 DDX21Q9NR30 783 aaKnown RBP eCLIP21.5■■□□□ 1.03
SNX1-203ENST00000558040 HYPKQ9NX55 129 aa21.5■■□□□ 1.03
SNX1-203ENST00000558040 CICQ96RK0 1608 aaPredicted RBP21.49■■□□□ 1.03
SNX1-203ENST00000558040 LOC102724428A0A0B4J2F2 783 aa21.49■■□□□ 1.03
SNX1-203ENST00000558040 SIK1P57059 783 aa21.49■■□□□ 1.03
SNX1-203ENST00000558040 IRX6P78412 446 aaPredicted RBP21.49■■□□□ 1.03
SNX1-203ENST00000558040 FKBP8Q14318 412 aa21.49■■□□□ 1.03
SNX1-203ENST00000558040 ZNF831Q5JPB2 1677 aa21.48■■□□□ 1.03
SNX1-203ENST00000558040 TRIM27P14373 513 aa21.48■■□□□ 1.03
SNX1-203ENST00000558040 FLIIQ13045 1269 aa21.48■■□□□ 1.03
SNX1-203ENST00000558040 DNAJC10Q8IXB1 793 aa21.48■■□□□ 1.03
SNX1-203ENST00000558040 DZIP1LQ8IYY4 767 aaKnown RBP21.48■■□□□ 1.03
SNX1-203ENST00000558040 ATP6V1AP38606 617 aa21.47■■□□□ 1.03
SNX1-203ENST00000558040 GTF3C3Q9Y5Q9 886 aa21.47■■□□□ 1.03
SNX1-203ENST00000558040 TJP1Q07157 1748 aa21.46■■□□□ 1.03
SNX1-203ENST00000558040 ERICH6BQ5W0A0 696 aa21.46■■□□□ 1.03
SNX1-203ENST00000558040 PTF1AQ7RTS3 328 aa21.46■■□□□ 1.03
SNX1-203ENST00000558040 SLC4A9Q96Q91 983 aa21.46■■□□□ 1.03
SNX1-203ENST00000558040 TRIM37O94972 964 aa21.45■■□□□ 1.02
SNX1-203ENST00000558040 FKBP5Q13451 457 aaPredicted RBP21.45■■□□□ 1.02
SNX1-203ENST00000558040 C20orf194Q5TEA3 1177 aa21.45■■□□□ 1.02
SNX1-203ENST00000558040 G2E3Q7L622 706 aa21.45■■□□□ 1.02
SNX1-203ENST00000558040 PDIA6Q15084 440 aa21.44■■□□□ 1.02
SNX1-203ENST00000558040 CLUAP1Q96AJ1 413 aa21.44■■□□□ 1.02
SNX1-203ENST00000558040 DDX58O95786 925 aaKnown RBP21.43■■□□□ 1.02
SNX1-203ENST00000558040 CYP19A1P11511 503 aaPredicted RBP21.43■■□□□ 1.02
SNX1-203ENST00000558040 MYL6BP14649 208 aa21.43■■□□□ 1.02
SNX1-203ENST00000558040 PROSER3Q2NL68 480 aa21.43■■□□□ 1.02
SNX1-203ENST00000558040 PANK1Q8TE04 598 aa21.43■■□□□ 1.02
SNX1-203ENST00000558040 PHAXQ9H814 394 aaKnown RBP21.43■■□□□ 1.02
SNX1-203ENST00000558040 ABCC4O15439 1325 aa21.43■■□□□ 1.02
SNX1-203ENST00000558040 LY75O60449 1722 aa21.42■■□□□ 1.02
SNX1-203ENST00000558040 ANXA1P04083 346 aa21.42■■□□□ 1.02
SNX1-203ENST00000558040 A1BGP04217 495 aa21.41■■□□□ 1.02
SNX1-203ENST00000558040 CRBNQ96SW2 442 aa21.41■■□□□ 1.02
SNX1-203ENST00000558040 TNNQ9UQP3 1299 aa21.41■■□□□ 1.02
SNX1-203ENST00000558040 RLBP1P12271 317 aa21.4■■□□□ 1.02
SNX1-203ENST00000558040 HMGB2P26583 209 aaKnown RBP21.4■■□□□ 1.02
SNX1-203ENST00000558040 ITPK1Q13572 414 aa21.4■■□□□ 1.02
SNX1-203ENST00000558040 CCNL1Q9UK58 526 aaPredicted RBP21.4■■□□□ 1.02
SNX1-203ENST00000558040 NBPF26B4DH59 902 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 MVPQ14764 893 aaKnown RBP21.39■■□□□ 1.01
SNX1-203ENST00000558040 NBPF14Q5TI25 921 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 NBPF10Q6P3W6 841 aaKnown RBP21.39■■□□□ 1.01
SNX1-203ENST00000558040 NBPF15Q8N660 670 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 CCDC87Q9NVE4 849 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 COG6Q9Y2V7 657 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 PXDNLA1KZ92 1463 aa21.39■■□□□ 1.01
SNX1-203ENST00000558040 COL5A3P25940 1745 aaPredicted RBP21.38■■□□□ 1.01
SNX1-203ENST00000558040 PIP4K2AP48426 406 aaPredicted RBP21.38■■□□□ 1.01
SNX1-203ENST00000558040 AIMP1Q12904 312 aaKnown RBP21.38■■□□□ 1.01
SNX1-203ENST00000558040 LRP10Q7Z4F1 713 aa21.38■■□□□ 1.01
SNX1-203ENST00000558040 ITPRIPQ8IWB1 547 aa21.38■■□□□ 1.01
SNX1-203ENST00000558040 TMEM57Q8N5G2 664 aa21.38■■□□□ 1.01
SNX1-203ENST00000558040 XAGE3Q8WTP9 111 aa21.38■■□□□ 1.01
SNX1-203ENST00000558040 CRKLP46109 303 aaKnown RBP21.37■■□□□ 1.01
SNX1-203ENST00000558040 SLC27A3Q5K4L6 730 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 KSR2Q6VAB6 950 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 COPS6Q7L5N1 327 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 NPM2Q86SE8 214 aaKnown RBP21.37■■□□□ 1.01
SNX1-203ENST00000558040 EXOC6Q8TAG9 804 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 CHMP4BQ9H444 224 aaKnown RBP21.37■■□□□ 1.01
SNX1-203ENST00000558040 DDX19BQ9UMR2 479 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 RREB1Q92766 1687 aa21.37■■□□□ 1.01
SNX1-203ENST00000558040 CNTNAP4Q9C0A0 1308 aa21.36■■□□□ 1.01
SNX1-203ENST00000558040 CCT4P50991 539 aaKnown RBP21.36■■□□□ 1.01
SNX1-203ENST00000558040 INTS3Q68E01 1043 aaKnown RBP21.36■■□□□ 1.01
SNX1-203ENST00000558040 ZBTB1Q9Y2K1 713 aa21.36■■□□□ 1.01
SNX1-203ENST00000558040 PI4KAP2A4QPH2 592 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 F6X3S4 739 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 APBA3O96018 575 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 IL6STP40189 918 aaPredicted RBP21.35■■□□□ 1.01
SNX1-203ENST00000558040 AAMPQ13685 434 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 SLC4A10Q6U841 1118 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 PI4KAP1Q8N8J0 262 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 DNAAF4Q8WXU2 420 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 ADCY9O60503 1353 aa21.35■■□□□ 1.01
SNX1-203ENST00000558040 PLSCR1O15162 318 aa21.34■■□□□ 1.01
SNX1-203ENST00000558040 INTS5Q6P9B9 1019 aaKnown RBP21.34■■□□□ 1.01
SNX1-203ENST00000558040 ANKRD13DQ6ZTN6 518 aa21.34■■□□□ 1.01
SNX1-203ENST00000558040 RIC3Q7Z5B4 369 aa21.34■■□□□ 1.01
SNX1-203ENST00000558040 LINC00116Q8NCU8 138 aa21.34■■□□□ 1.01
SNX1-203ENST00000558040 ZNF330Q9Y3S2 320 aaPredicted RBP21.34■■□□□ 1.01
SNX1-203ENST00000558040 TNS1Q9HBL0 1735 aaKnown RBP21.34■■□□□ 1.01
SNX1-203ENST00000558040 RC3H1Q5TC82 1133 aaKnown RBP21.33■■□□□ 1.01
SNX1-203ENST00000558040 KIF6Q6ZMV9 814 aa21.33■■□□□ 1.01
SNX1-203ENST00000558040 PLBD2Q8NHP8 589 aa21.33■■□□□ 1.01
SNX1-203ENST00000558040 MAP3K2Q9Y2U5 619 aa21.33■■□□□ 1.01
SNX1-203ENST00000558040 ATP10DQ9P241 1426 aa21.32■■□□□ 1
SNX1-203ENST00000558040 RGPD3A6NKT7 1758 aaPredicted RBP21.32■■□□□ 1
SNX1-203ENST00000558040 RGPD4Q7Z3J3 1758 aa21.32■■□□□ 1
SNX1-203ENST00000558040 N4BP2Q86UW6 1770 aaPredicted RBP21.32■■□□□ 1
SNX1-203ENST00000558040 KCNQ4P56696 695 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms