RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 FAM205CA6NFA0 338 aa8.28□□□□□ -1.08
VPS33B-207ENST00000557470 KIF3CO14782 793 aa8.28□□□□□ -1.08
VPS33B-207ENST00000557470 HOXB1P14653 301 aaPredicted RBP8.28□□□□□ -1.08
VPS33B-207ENST00000557470 FBLN1P23142 703 aa8.28□□□□□ -1.08
VPS33B-207ENST00000557470 CARD11Q9BXL7 1154 aa8.28□□□□□ -1.08
VPS33B-207ENST00000557470 ADCY9O60503 1353 aa8.27□□□□□ -1.09
VPS33B-207ENST00000557470 AMPHP49418 695 aa8.27□□□□□ -1.09
VPS33B-207ENST00000557470 USHBP1Q8N6Y0 703 aa8.27□□□□□ -1.09
VPS33B-207ENST00000557470 HS3ST6Q96QI5 342 aa8.27□□□□□ -1.09
VPS33B-207ENST00000557470 RGPD2P0DJD1 1756 aa8.27□□□□□ -1.09
VPS33B-207ENST00000557470 NBPF6Q5VWK0 638 aa8.26□□□□□ -1.09
VPS33B-207ENST00000557470 NPM2Q86SE8 214 aaKnown RBP8.26□□□□□ -1.09
VPS33B-207ENST00000557470 COG3Q96JB2 828 aa8.26□□□□□ -1.09
VPS33B-207ENST00000557470 NBPF4Q96M43 638 aa8.26□□□□□ -1.09
VPS33B-207ENST00000557470 GPBP1L1Q9HC44 474 aaPredicted RBP8.26□□□□□ -1.09
VPS33B-207ENST00000557470 CD2APQ9Y5K6 639 aa8.26□□□□□ -1.09
VPS33B-207ENST00000557470 C5P01031 1676 aa8.26□□□□□ -1.09
VPS33B-207ENST00000557470 RTL1A6NKG5 1358 aa8.25□□□□□ -1.09
VPS33B-207ENST00000557470 PALLDQ8WX93 1383 aa8.25□□□□□ -1.09
VPS33B-207ENST00000557470 RRS1Q15050 365 aaKnown RBP8.25□□□□□ -1.09
VPS33B-207ENST00000557470 AMIGO3Q86WK7 504 aa8.25□□□□□ -1.09
VPS33B-207ENST00000557470 ZNF526Q8TF50 670 aaPredicted RBP8.25□□□□□ -1.09
VPS33B-207ENST00000557470 PUS7Q96PZ0 661 aaKnown RBP8.25□□□□□ -1.09
VPS33B-207ENST00000557470 RIMBP2O15034 1052 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 HSPA6P17066 643 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 GPR153Q6NV75 609 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 RAPGEF4Q8WZA2 1011 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 WWC3Q9ULE0 1092 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 CGNL1Q0VF96 1302 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 PCDH11XQ9BZA7 1347 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 PCDH11YQ9BZA8 1340 aa8.24□□□□□ -1.09
VPS33B-207ENST00000557470 TOGARAM1Q9Y4F4 1720 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 FLAD1Q8NFF5 587 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 TESK2Q96S53 571 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 TAF1LQ8IZX4 1826 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 IGSF1Q8N6C5 1336 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 C4BP0C0L5 1744 aa8.23□□□□□ -1.09
VPS33B-207ENST00000557470 SMG6Q86US8 1419 aaKnown RBP8.22□□□□□ -1.09
VPS33B-207ENST00000557470 ST20-MTHFSA0A0A6YYL1 179 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 CYP27B1O15528 508 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 PHF14O94880 888 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 TATP17735 454 aaPredicted RBP8.22□□□□□ -1.09
VPS33B-207ENST00000557470 ARSIQ5FYB1 569 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 MPRIPQ6WCQ1 1025 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 SMIM5Q71RC9 77 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 KHSRPQ92945 711 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS33B-207ENST00000557470 AK7Q96M32 723 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 GGNBP2Q9H3C7 697 aa8.22□□□□□ -1.09
VPS33B-207ENST00000557470 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.21□□□□□ -1.1
VPS33B-207ENST00000557470 FYB1O15117 783 aa8.21□□□□□ -1.1
VPS33B-207ENST00000557470 HSP90AB2PQ58FF8 381 aa8.21□□□□□ -1.1
VPS33B-207ENST00000557470 TMC2Q8TDI7 906 aa8.21□□□□□ -1.1
VPS33B-207ENST00000557470 UBR3Q6ZT12 1888 aa8.21□□□□□ -1.1
VPS33B-207ENST00000557470 INSRP06213 1382 aa8.21□□□□□ -1.1
VPS33B-207ENST00000557470 HMGB2P26583 209 aaKnown RBP8.2□□□□□ -1.1
VPS33B-207ENST00000557470 LINC00116Q8NCU8 138 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 PIGBQ92521 554 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 SMARCC1Q92922 1105 aaPredicted RBP8.2□□□□□ -1.1
VPS33B-207ENST00000557470 KRTAP3-3Q9BYR6 98 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 KRTAP3-2Q9BYR7 98 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 ZSWIM6Q9HCJ5 1215 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 FLT4P35916 1363 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 TONSLQ96HA7 1378 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 NSD3Q9BZ95 1437 aa8.2□□□□□ -1.1
VPS33B-207ENST00000557470 CICQ96RK0 1608 aaPredicted RBP8.19□□□□□ -1.1
VPS33B-207ENST00000557470 SSFA2P28290 1259 aa8.19□□□□□ -1.1
VPS33B-207ENST00000557470 PKD1L3Q7Z443 1732 aa8.19□□□□□ -1.1
VPS33B-207ENST00000557470 ITGB4P16144 1822 aa8.19□□□□□ -1.1
VPS33B-207ENST00000557470 MAP2P11137 1827 aaKnown RBP8.18□□□□□ -1.1
VPS33B-207ENST00000557470 LOC102724428A0A0B4J2F2 783 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 GNPATO15228 680 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 SIK1P57059 783 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 VARS2Q5ST30 1063 aaKnown RBP8.18□□□□□ -1.1
VPS33B-207ENST00000557470 KIF24Q5T7B8 1368 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 NCAPD2Q15021 1401 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 PXDNLA1KZ92 1463 aa8.18□□□□□ -1.1
VPS33B-207ENST00000557470 GTPBP6O43824 516 aaPredicted RBP8.17□□□□□ -1.1
VPS33B-207ENST00000557470 MMP10P09238 476 aa8.17□□□□□ -1.1
VPS33B-207ENST00000557470 APLP1P51693 650 aa8.17□□□□□ -1.1
VPS33B-207ENST00000557470 TRIM26Q12899 539 aaPredicted RBP8.17□□□□□ -1.1
VPS33B-207ENST00000557470 ITPK1Q13572 414 aa8.17□□□□□ -1.1
VPS33B-207ENST00000557470 EMILIN1Q9Y6C2 1016 aa8.17□□□□□ -1.1
VPS33B-207ENST00000557470 KIF20BQ96Q89 1820 aa8.17□□□□□ -1.1
VPS33B-207ENST00000557470 KIAA1551Q9HCM1 1747 aa8.16□□□□□ -1.1
VPS33B-207ENST00000557470 TMOD3Q9NYL9 352 aa8.16□□□□□ -1.1
VPS33B-207ENST00000557470 ASAP1Q9ULH1 1129 aa8.16□□□□□ -1.1
VPS33B-207ENST00000557470 C10orf71Q711Q0 1435 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 TOMM70O94826 608 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 ATP6V1AP38606 617 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 SPNS2Q8IVW8 549 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 DNAJC5GQ8N7S2 189 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 NMRK2Q9NPI5 230 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 SPG7Q9UQ90 795 aa8.15□□□□□ -1.1
VPS33B-207ENST00000557470 KIF13BQ9NQT8 1826 aa8.15□□□□□ -1.11
VPS33B-207ENST00000557470 N4BP2Q86UW6 1770 aaPredicted RBP8.15□□□□□ -1.11
VPS33B-207ENST00000557470 KDRP35968 1356 aa8.14□□□□□ -1.11
VPS33B-207ENST00000557470 A0A0G2JLW4 131 aa8.14□□□□□ -1.11
VPS33B-207ENST00000557470 PPM1GO15355 546 aaPredicted RBP8.14□□□□□ -1.11
VPS33B-207ENST00000557470 TMF1P82094 1093 aa8.14□□□□□ -1.11
VPS33B-207ENST00000557470 EYA1Q99502 592 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms