RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 GNAT3A8MTJ3 354 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 TM4SF1P30408 202 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 TEFQ10587 303 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 CFAP53Q96M91 514 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 PIM2Q9P1W9 311 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 NARFQ9UHQ1 456 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 ZBTB1Q9Y2K1 713 aa14.88□□□□□ -0.03
CCDC88C-213ENST00000557455 POLRMTO00411 1230 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-213ENST00000557455 KCNA3P22001 575 aa14.87□□□□□ -0.03
CCDC88C-213ENST00000557455 IL17REQ8NFR9 667 aa14.87□□□□□ -0.03
CCDC88C-213ENST00000557455 STARD3NLO95772 234 aa14.86□□□□□ -0.03
CCDC88C-213ENST00000557455 CANXP27824 592 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-213ENST00000557455 DALRD3Q5D0E6 543 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-213ENST00000557455 ZNF790Q6PG37 636 aa14.85□□□□□ -0.03
CCDC88C-213ENST00000557455 NRXN2Q9P2S2 1712 aa14.85□□□□□ -0.03
CCDC88C-213ENST00000557455 CHRNA5P30532 468 aa14.84□□□□□ -0.03
CCDC88C-213ENST00000557455 PRKAR2BP31323 418 aa14.84□□□□□ -0.03
CCDC88C-213ENST00000557455 NFIXQ14938 502 aa14.84□□□□□ -0.03
CCDC88C-213ENST00000557455 TEX13AQ9BXU3 409 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-213ENST00000557455 NUDCQ9Y266 331 aa14.84□□□□□ -0.03
CCDC88C-213ENST00000557455 ZNF496Q96IT1 587 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-213ENST00000557455 PHACTR3Q96KR7 559 aa14.83□□□□□ -0.04
CCDC88C-213ENST00000557455 RSPH6AQ9H0K4 717 aa14.83□□□□□ -0.04
CCDC88C-213ENST00000557455 BCL2L12Q9HB09 334 aa14.83□□□□□ -0.04
CCDC88C-213ENST00000557455 HEG1Q9ULI3 1381 aa14.83□□□□□ -0.04
CCDC88C-213ENST00000557455 SBF1O95248 1867 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 A0A087WZG4 1122 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 KIF3CO14782 793 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 SERPINB2P05120 415 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 PPP2R1AP30153 589 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 EIF5P55010 431 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 FMNL2Q96PY5 1086 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 DLEC1Q9Y238 1755 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 CEMIPQ8WUJ3 1361 aa14.82□□□□□ -0.04
CCDC88C-213ENST00000557455 CEP350Q5VT06 3117 aa14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 BTBD11A6QL63 1104 aa14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 U2AF1L5P0DN76 240 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 U2AF1Q01081 240 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 C9orf131Q5VYM1 1079 aa14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 ZNF330Q9Y3S2 320 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-213ENST00000557455 HSPA6P17066 643 aa14.8□□□□□ -0.04
CCDC88C-213ENST00000557455 RTF1Q92541 710 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-213ENST00000557455 SCN7AQ01118 1682 aa14.8□□□□□ -0.04
CCDC88C-213ENST00000557455 IL6STP40189 918 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-213ENST00000557455 BICDL1Q6ZP65 573 aa14.79□□□□□ -0.04
CCDC88C-213ENST00000557455 NPM2Q86SE8 214 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-213ENST00000557455 KCNQ3O43525 872 aa14.78□□□□□ -0.04
CCDC88C-213ENST00000557455 RNF181Q9P0P0 153 aa14.78□□□□□ -0.04
CCDC88C-213ENST00000557455 TBC1D2BQ9UPU7 963 aa14.78□□□□□ -0.04
CCDC88C-213ENST00000557455 CCDC88AQ3V6T2 1871 aa14.78□□□□□ -0.04
CCDC88C-213ENST00000557455 A1BGP04217 495 aa14.77□□□□□ -0.05
CCDC88C-213ENST00000557455 TBC1D9BQ66K14 1250 aa14.77□□□□□ -0.05
CCDC88C-213ENST00000557455 C2CD5Q86YS7 1000 aa14.77□□□□□ -0.05
CCDC88C-213ENST00000557455 NMRK2Q9NPI5 230 aa14.77□□□□□ -0.05
CCDC88C-213ENST00000557455 ANKRD31Q8N7Z5 1873 aa14.77□□□□□ -0.05
CCDC88C-213ENST00000557455 CARMIL3Q8ND23 1372 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 BCORQ6W2J9 1755 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 H0YIN7 160 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 TOMM70O94826 608 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 MCM10Q7L590 875 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 TTLL6Q8N841 843 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 DLG5Q8TDM6 1919 aa14.76□□□□□ -0.05
CCDC88C-213ENST00000557455 USP16Q9Y5T5 823 aa14.75□□□□□ -0.05
CCDC88C-213ENST00000557455 KDM2BQ8NHM5 1336 aa14.74□□□□□ -0.05
CCDC88C-213ENST00000557455 HTATSF1O43719 755 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-213ENST00000557455 SETDB2Q96T68 719 aa14.74□□□□□ -0.05
CCDC88C-213ENST00000557455 TNRC6CQ9HCJ0 1690 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-213ENST00000557455 CACNA1SQ13698 1873 aa14.74□□□□□ -0.05
CCDC88C-213ENST00000557455 COL11A2P13942 1736 aaPredicted RBP14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 NPHP1O15259 732 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 CAMTA2O94983 1202 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 NEFMP07197 916 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 SNRPA1P09661 255 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 PDE6BP35913 854 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 RASSF7Q02833 373 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 DCTN1Q14203 1278 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 PRR5LQ6MZQ0 368 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 DZIP3Q86Y13 1208 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 C16orf71Q8IYS4 520 aaPredicted RBP14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 BRIP1Q9BX63 1249 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 PDZRN3Q9UPQ7 1066 aa14.73□□□□□ -0.05
CCDC88C-213ENST00000557455 PRAMEF22A3QJZ6 481 aa14.72□□□□□ -0.05
CCDC88C-213ENST00000557455 PIP4K2AP48426 406 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-213ENST00000557455 CCDC24Q8N4L8 307 aa14.72□□□□□ -0.05
CCDC88C-213ENST00000557455 ZNF622Q969S3 477 aaKnown RBP eCLIP14.72□□□□□ -0.05
CCDC88C-213ENST00000557455 ZC3H4Q9UPT8 1303 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 LMNB1P20700 586 aa14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 APLP1P51693 650 aa14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 TAF7Q15545 349 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 CNBD1Q8NA66 436 aa14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 RBM46Q8TBY0 533 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 RRAGCQ9HB90 399 aa14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 TIAM2Q8IVF5 1701 aa14.71□□□□□ -0.05
CCDC88C-213ENST00000557455 LAMB4A4D0S4 1761 aa14.7□□□□□ -0.06
CCDC88C-213ENST00000557455 ST5P78524 1137 aa14.7□□□□□ -0.06
CCDC88C-213ENST00000557455 DICER1Q9UPY3 1922 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-213ENST00000557455 FER1L6Q2WGJ9 1857 aa14.69□□□□□ -0.06
CCDC88C-213ENST00000557455 PRELPP51888 382 aa14.69□□□□□ -0.06
CCDC88C-213ENST00000557455 CLEC4GQ6UXB4 293 aa14.69□□□□□ -0.06
CCDC88C-213ENST00000557455 ZNF219Q9P2Y4 722 aaPredicted RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms