RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 KCNQ3O43525 872 aa15.72■□□□□ 0.11
SHMT2-229ENST00000557348 SNRPA1P09661 255 aaKnown RBP15.72■□□□□ 0.11
SHMT2-229ENST00000557348 ANKRD45Q5TZF3 282 aa15.72■□□□□ 0.11
SHMT2-229ENST00000557348 DDX21Q9NR30 783 aaKnown RBP eCLIP15.72■□□□□ 0.11
SHMT2-229ENST00000557348 ERBB4Q15303 1308 aa15.71■□□□□ 0.11
SHMT2-229ENST00000557348 NFATC2IPQ8NCF5 419 aa15.71■□□□□ 0.11
SHMT2-229ENST00000557348 DAXXQ9UER7 740 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-229ENST00000557348 ALDH1L1O75891 902 aa15.7■□□□□ 0.1
SHMT2-229ENST00000557348 UBTFL1P0CB47 393 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-229ENST00000557348 BMP2KLQ5H9B9 411 aa15.7■□□□□ 0.1
SHMT2-229ENST00000557348 LNPKQ9C0E8 428 aa15.7■□□□□ 0.1
SHMT2-229ENST00000557348 PHAXQ9H814 394 aaKnown RBP15.7■□□□□ 0.1
SHMT2-229ENST00000557348 STRN4Q9NRL3 753 aa15.7■□□□□ 0.1
SHMT2-229ENST00000557348 LARP1Q6PKG0 1096 aaKnown RBP15.69■□□□□ 0.1
SHMT2-229ENST00000557348 KSR2Q6VAB6 950 aa15.69■□□□□ 0.1
SHMT2-229ENST00000557348 FAM43AQ8N2R8 423 aa15.69■□□□□ 0.1
SHMT2-229ENST00000557348 IL27Q8NEV9 243 aa15.69■□□□□ 0.1
SHMT2-229ENST00000557348 CDCA7Q9BWT1 371 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-229ENST00000557348 PLCH1Q4KWH8 1693 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 PI4KAP2A4QPH2 592 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 ATP8B2P98198 1209 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 BEND3Q5T5X7 828 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 NPM2Q86SE8 214 aaKnown RBP15.67■□□□□ 0.1
SHMT2-229ENST00000557348 PI4KAP1Q8N8J0 262 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 BTG4Q9NY30 223 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 USP44Q9H0E7 712 aa15.67■□□□□ 0.1
SHMT2-229ENST00000557348 ADCY9O60503 1353 aa15.66■□□□□ 0.1
SHMT2-229ENST00000557348 COL16A1Q07092 1604 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-229ENST00000557348 ZNF496Q96IT1 587 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-229ENST00000557348 PHLPP1O60346 1717 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 DISP2A7MBM2 1401 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 NEXNQ0ZGT2 675 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 SLC39A6Q13433 755 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 NFKBIBQ15653 356 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 LINS1Q8NG48 757 aa15.65■□□□□ 0.1
SHMT2-229ENST00000557348 LAMB4A4D0S4 1761 aa15.64■□□□□ 0.09
SHMT2-229ENST00000557348 HSP90AB4PQ58FF6 505 aa15.64■□□□□ 0.09
SHMT2-229ENST00000557348 THRAP3Q9Y2W1 955 aaKnown RBP15.64■□□□□ 0.09
SHMT2-229ENST00000557348 LRP6O75581 1613 aa15.64■□□□□ 0.09
SHMT2-229ENST00000557348 MAP3K2Q9Y2U5 619 aa15.63■□□□□ 0.09
SHMT2-229ENST00000557348 TNS2Q63HR2 1409 aa15.63■□□□□ 0.09
SHMT2-229ENST00000557348 PAPPAQ13219 1627 aa15.63■□□□□ 0.09
SHMT2-229ENST00000557348 RAB11FIP3O75154 756 aa15.63■□□□□ 0.09
SHMT2-229ENST00000557348 PDIA6Q15084 440 aa15.63■□□□□ 0.09
SHMT2-229ENST00000557348 LRRFIP2Q9Y608 721 aaKnown RBP15.63■□□□□ 0.09
SHMT2-229ENST00000557348 MTX1Q13505 466 aa15.62■□□□□ 0.09
SHMT2-229ENST00000557348 SSH3Q8TE77 659 aa15.62■□□□□ 0.09
SHMT2-229ENST00000557348 TEX13AQ9BXU3 409 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-229ENST00000557348 SHANK3Q9BYB0 1731 aa15.62■□□□□ 0.09
SHMT2-229ENST00000557348 C5P01031 1676 aa15.62■□□□□ 0.09
SHMT2-229ENST00000557348 RIC3Q7Z5B4 369 aa15.61■□□□□ 0.09
SHMT2-229ENST00000557348 DDX54Q8TDD1 881 aaKnown RBP15.61■□□□□ 0.09
SHMT2-229ENST00000557348 LRRCC1Q9C099 1032 aa15.61■□□□□ 0.09
SHMT2-229ENST00000557348 TMOD3Q9NYL9 352 aa15.61■□□□□ 0.09
SHMT2-229ENST00000557348 C9orf78Q9NZ63 289 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-229ENST00000557348 UBR2Q8IWV8 1755 aa15.61■□□□□ 0.09
SHMT2-229ENST00000557348 UTYO14607 1347 aa15.61■□□□□ 0.09
SHMT2-229ENST00000557348 PLEKHM2Q8IWE5 1019 aa15.6■□□□□ 0.09
SHMT2-229ENST00000557348 VSIG10Q8N0Z9 540 aa15.6■□□□□ 0.09
SHMT2-229ENST00000557348 POLA2Q14181 598 aa15.6■□□□□ 0.09
SHMT2-229ENST00000557348 PROSER3Q2NL68 480 aa15.6■□□□□ 0.09
SHMT2-229ENST00000557348 OSBPL3Q9H4L5 887 aa15.6■□□□□ 0.09
SHMT2-229ENST00000557348 KCPQ6ZWJ8 1503 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 GLI3P10071 1580 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 PRAMEF22A3QJZ6 481 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 EXOC5O00471 708 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 ANXA1P04083 346 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 TBC1D32Q96NH3 1257 aa15.59■□□□□ 0.09
SHMT2-229ENST00000557348 CDC45O75419 566 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 L1TD1Q5T7N2 865 aaKnown RBP15.58■□□□□ 0.08
SHMT2-229ENST00000557348 TTC22Q5TAA0 569 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 CASC1Q6TDU7 716 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 ANKRD13DQ6ZTN6 518 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 XAGE3Q8WTP9 111 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 METTL22Q9BUU2 404 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-229ENST00000557348 AOX1Q06278 1338 aa15.58■□□□□ 0.08
SHMT2-229ENST00000557348 GRM8O00222 908 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 BECN1Q14457 450 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 PLBD2Q8NHP8 589 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 USP16Q9Y5T5 823 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 NWD2Q9ULI1 1742 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 COL15A1P39059 1388 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 PNMA6EA0A0J9YXQ4 647 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 COPS6Q7L5N1 327 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 ERC1Q8IUD2 1116 aa15.57■□□□□ 0.08
SHMT2-229ENST00000557348 WNK3Q9BYP7 1800 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 NBPF7P0C2Y1 421 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-229ENST00000557348 MYL6BP14649 208 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 AIMP1Q12904 312 aaKnown RBP15.56■□□□□ 0.08
SHMT2-229ENST00000557348 LRP10Q7Z4F1 713 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 PPP1R42Q7Z4L9 355 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 KIF1BPQ96EK5 621 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 NRAPQ86VF7 1730 aa15.56■□□□□ 0.08
SHMT2-229ENST00000557348 SRGAP3O43295 1099 aa15.55■□□□□ 0.08
SHMT2-229ENST00000557348 SPATA31A1Q5TZJ5 1347 aa15.55■□□□□ 0.08
SHMT2-229ENST00000557348 GLIPR1L2Q4G1C9 344 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 EXOC6BQ9Y2D4 811 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 SLIT2O94813 1529 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 NEURL1BA8MQ27 555 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 BARGINQ6ZT62 677 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms