RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 NLGN1Q8N2Q7 840 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 BCL2L12Q9HB09 334 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 CEMIPQ8WUJ3 1361 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 LAMB4A4D0S4 1761 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 DPEP1P16444 411 aa14.69□□□□□ -0.06
SYNE2-227ENST00000557307 SBF1O95248 1867 aa14.69□□□□□ -0.06
SYNE2-227ENST00000557307 GNAT3A8MTJ3 354 aa14.68□□□□□ -0.06
SYNE2-227ENST00000557307 KCNA3P22001 575 aa14.68□□□□□ -0.06
SYNE2-227ENST00000557307 ZNF496Q96IT1 587 aaPredicted RBP14.68□□□□□ -0.06
SYNE2-227ENST00000557307 CARMIL3Q8ND23 1372 aa14.68□□□□□ -0.06
SYNE2-227ENST00000557307 POLRMTO00411 1230 aaKnown RBP14.67□□□□□ -0.06
SYNE2-227ENST00000557307 GAS2L2Q8NHY3 880 aa14.67□□□□□ -0.06
SYNE2-227ENST00000557307 PARP3Q9Y6F1 533 aa14.67□□□□□ -0.06
SYNE2-227ENST00000557307 HEG1Q9ULI3 1381 aa14.67□□□□□ -0.06
SYNE2-227ENST00000557307 CCDC88AQ3V6T2 1871 aa14.66□□□□□ -0.06
SYNE2-227ENST00000557307 PRAMEF22A3QJZ6 481 aa14.66□□□□□ -0.06
SYNE2-227ENST00000557307 CANXP27824 592 aaKnown RBP14.66□□□□□ -0.06
SYNE2-227ENST00000557307 TM4SF1P30408 202 aa14.66□□□□□ -0.06
SYNE2-227ENST00000557307 DCTN1Q14203 1278 aa14.66□□□□□ -0.06
SYNE2-227ENST00000557307 U2AF1L5P0DN76 240 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-227ENST00000557307 CHRNA5P30532 468 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 C1QTNF8P60827 252 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 U2AF1Q01081 240 aaKnown RBP eCLIP14.65□□□□□ -0.06
SYNE2-227ENST00000557307 TEFQ10587 303 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 ZNF790Q6PG37 636 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 MCM10Q7L590 875 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 ZNF526Q8TF50 670 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-227ENST00000557307 BCS1LQ9Y276 419 aa14.65□□□□□ -0.06
SYNE2-227ENST00000557307 GIGYF1O75420 1035 aaPredicted RBP14.64□□□□□ -0.07
SYNE2-227ENST00000557307 PIP4K2AP48426 406 aaPredicted RBP14.64□□□□□ -0.07
SYNE2-227ENST00000557307 TGFB2P61812 414 aa14.64□□□□□ -0.07
SYNE2-227ENST00000557307 NFIXQ14938 502 aa14.64□□□□□ -0.07
SYNE2-227ENST00000557307 VSIG10Q8N0Z9 540 aa14.64□□□□□ -0.07
SYNE2-227ENST00000557307 CFAP53Q96M91 514 aa14.64□□□□□ -0.07
SYNE2-227ENST00000557307 NARFQ9UHQ1 456 aa14.64□□□□□ -0.07
SYNE2-227ENST00000557307 TIAM2Q8IVF5 1701 aa14.63□□□□□ -0.07
SYNE2-227ENST00000557307 TTC5Q8N0Z6 440 aa14.63□□□□□ -0.07
SYNE2-227ENST00000557307 CEP350Q5VT06 3117 aa14.63□□□□□ -0.07
SYNE2-227ENST00000557307 A1BGP04217 495 aa14.62□□□□□ -0.07
SYNE2-227ENST00000557307 EIF5P55010 431 aaKnown RBP14.62□□□□□ -0.07
SYNE2-227ENST00000557307 ARFGEF2Q9Y6D5 1785 aa14.61□□□□□ -0.07
SYNE2-227ENST00000557307 ZPR1O75312 459 aa14.61□□□□□ -0.07
SYNE2-227ENST00000557307 FCHSD2O94868 740 aa14.61□□□□□ -0.07
SYNE2-227ENST00000557307 SENP3-EIF4A1A0A087X0R7 540 aa14.6□□□□□ -0.07
SYNE2-227ENST00000557307 BTBD11A6QL63 1104 aa14.6□□□□□ -0.07
SYNE2-227ENST00000557307 BICDL1Q6ZP65 573 aa14.6□□□□□ -0.07
SYNE2-227ENST00000557307 CCDC24Q8N4L8 307 aa14.6□□□□□ -0.07
SYNE2-227ENST00000557307 ZNF330Q9Y3S2 320 aaPredicted RBP14.6□□□□□ -0.07
SYNE2-227ENST00000557307 USP16Q9Y5T5 823 aa14.6□□□□□ -0.07
SYNE2-227ENST00000557307 TBC1D9BQ66K14 1250 aa14.59□□□□□ -0.07
SYNE2-227ENST00000557307 FMNL2Q96PY5 1086 aa14.59□□□□□ -0.07
SYNE2-227ENST00000557307 TBC1D2BQ9UPU7 963 aa14.59□□□□□ -0.07
SYNE2-227ENST00000557307 NUDCQ9Y266 331 aa14.59□□□□□ -0.07
SYNE2-227ENST00000557307 TNRC6CQ9HCJ0 1690 aaKnown RBP14.58□□□□□ -0.07
SYNE2-227ENST00000557307 NUP98P52948 1817 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 SERPINB2P05120 415 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 ARHGAP27Q6ZUM4 889 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 PLEKHF1Q96S99 279 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 MIS18AQ9NYP9 233 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 FER1L6Q2WGJ9 1857 aa14.58□□□□□ -0.08
SYNE2-227ENST00000557307 STARD3NLO95772 234 aa14.57□□□□□ -0.08
SYNE2-227ENST00000557307 PRELPP51888 382 aa14.57□□□□□ -0.08
SYNE2-227ENST00000557307 THUMPD2Q9BTF0 503 aaKnown RBP14.57□□□□□ -0.08
SYNE2-227ENST00000557307 GPBP1L1Q9HC44 474 aaPredicted RBP14.57□□□□□ -0.08
SYNE2-227ENST00000557307 SLX4Q8IY92 1834 aa14.57□□□□□ -0.08
SYNE2-227ENST00000557307 KIF3CO14782 793 aa14.56□□□□□ -0.08
SYNE2-227ENST00000557307 CAMTA2O94983 1202 aa14.56□□□□□ -0.08
SYNE2-227ENST00000557307 RASSF7Q02833 373 aa14.56□□□□□ -0.08
SYNE2-227ENST00000557307 PIM2Q9P1W9 311 aa14.56□□□□□ -0.08
SYNE2-227ENST00000557307 DICER1Q9UPY3 1922 aaKnown RBP14.55□□□□□ -0.08
SYNE2-227ENST00000557307 NBPF26B4DH59 902 aa14.55□□□□□ -0.08
SYNE2-227ENST00000557307 IL6STP40189 918 aaPredicted RBP14.55□□□□□ -0.08
SYNE2-227ENST00000557307 NBPF10Q6P3W6 841 aaKnown RBP14.55□□□□□ -0.08
SYNE2-227ENST00000557307 NBPF15Q8N660 670 aa14.55□□□□□ -0.08
SYNE2-227ENST00000557307 DALRD3Q5D0E6 543 aaKnown RBP14.54□□□□□ -0.08
SYNE2-227ENST00000557307 PRR5LQ6MZQ0 368 aa14.54□□□□□ -0.08
SYNE2-227ENST00000557307 RTF1Q92541 710 aaKnown RBP14.54□□□□□ -0.08
SYNE2-227ENST00000557307 DDX10Q13206 875 aaKnown RBP14.53□□□□□ -0.08
SYNE2-227ENST00000557307 C9orf131Q5VYM1 1079 aa14.53□□□□□ -0.08
SYNE2-227ENST00000557307 A0A087WZG4 1122 aa14.52□□□□□ -0.09
SYNE2-227ENST00000557307 DZIP3Q86Y13 1208 aaKnown RBP14.52□□□□□ -0.09
SYNE2-227ENST00000557307 C2CD5Q86YS7 1000 aa14.52□□□□□ -0.09
SYNE2-227ENST00000557307 TEX13AQ9BXU3 409 aaPredicted RBP14.52□□□□□ -0.09
SYNE2-227ENST00000557307 NMRK2Q9NPI5 230 aa14.52□□□□□ -0.09
SYNE2-227ENST00000557307 HTATSF1O43719 755 aaKnown RBP14.51□□□□□ -0.09
SYNE2-227ENST00000557307 NFE2L2Q16236 605 aa14.51□□□□□ -0.09
SYNE2-227ENST00000557307 ANKRD36CQ5JPF3 1778 aa14.5□□□□□ -0.09
SYNE2-227ENST00000557307 WDR90Q96KV7 1748 aa14.5□□□□□ -0.09
SYNE2-227ENST00000557307 SNRPA1P09661 255 aaKnown RBP14.5□□□□□ -0.09
SYNE2-227ENST00000557307 TAF7Q15545 349 aaPredicted RBP14.5□□□□□ -0.09
SYNE2-227ENST00000557307 RNF181Q9P0P0 153 aa14.5□□□□□ -0.09
SYNE2-227ENST00000557307 NFKBIEO00221 500 aa14.49□□□□□ -0.09
SYNE2-227ENST00000557307 HLFQ16534 295 aa14.49□□□□□ -0.09
SYNE2-227ENST00000557307 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
SYNE2-227ENST00000557307 LAMB2P55268 1798 aa14.49□□□□□ -0.09
SYNE2-227ENST00000557307 EIF4A1P60842 406 aaKnown RBP14.48□□□□□ -0.09
SYNE2-227ENST00000557307 CCDC146Q8IYE0 955 aa14.47□□□□□ -0.09
SYNE2-227ENST00000557307 TTLL6Q8N841 843 aa14.47□□□□□ -0.09
SYNE2-227ENST00000557307 RRP7AQ9Y3A4 280 aaKnown RBP14.47□□□□□ -0.09
SYNE2-227ENST00000557307 FAM177BA6PVY3 158 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms