RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 CTAGE1Q96RT6 745 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 NUP88Q99567 741 aaPredicted RBP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 RIC3Q7Z5B4 369 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 BCAP29Q9UHQ4 241 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 NDC80O14777 642 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 PDE3AQ14432 1141 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 TTC31Q49AM3 519 aaPredicted RBP10.17□□□□□ -0.78
SYNE3-205ENST00000557275 ZHX3Q9H4I2 956 aa10.17□□□□□ -0.78
SYNE3-205ENST00000557275 DNAJC8O75937 253 aaPredicted RBP10.16□□□□□ -0.78
SYNE3-205ENST00000557275 MRPS9P82933 396 aaKnown RBP10.16□□□□□ -0.78
SYNE3-205ENST00000557275 ARHGAP24Q8N264 748 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 CCT4P50991 539 aaKnown RBP10.16□□□□□ -0.78
SYNE3-205ENST00000557275 LMAN1P49257 510 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 FERMT2Q96AC1 680 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 SH2B1Q9NRF2 756 aaPredicted RBP10.16□□□□□ -0.78
SYNE3-205ENST00000557275 MAATS1Q7Z4T9 603 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 AKAP2Q9Y2D5 859 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC12Q8WUD4 166 aaPredicted RBP10.16□□□□□ -0.78
SYNE3-205ENST00000557275 ZBTB16Q05516 673 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 TRPC3Q13507 836 aa10.16□□□□□ -0.78
SYNE3-205ENST00000557275 PSMC4P43686 418 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 SLC4A3P48751 1232 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 CCDC38Q502W7 563 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 U3KPZ7 1027 aaPredicted RBP10.15□□□□□ -0.78
SYNE3-205ENST00000557275 CTCFLQ8NI51 663 aaPredicted RBP10.15□□□□□ -0.78
SYNE3-205ENST00000557275 NUF2Q9BZD4 464 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 GBP1P32455 592 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 CROCCP2Q86T23 111 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 GOLGA1Q92805 767 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 PHF23Q9BUL5 403 aaPredicted RBP10.15□□□□□ -0.78
SYNE3-205ENST00000557275 PRDM2Q13029 1718 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 ZNF76P36508 570 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 POTEDQ86YR6 584 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.15□□□□□ -0.78
SYNE3-205ENST00000557275 SAMD15Q9P1V8 674 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 GNAI2P04899 355 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 RIPK4P57078 832 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 AFAP1L2Q8N4X5 818 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 PRC1O43663 620 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 LNPKQ9C0E8 428 aa10.15□□□□□ -0.78
SYNE3-205ENST00000557275 DHX29Q7Z478 1369 aaKnown RBP10.15□□□□□ -0.78
SYNE3-205ENST00000557275 FOSBP53539 338 aa10.15□□□□□ -0.79
SYNE3-205ENST00000557275 BLOC1S2Q6QNY1 142 aa10.15□□□□□ -0.79
SYNE3-205ENST00000557275 CIB2O75838 187 aa10.15□□□□□ -0.79
SYNE3-205ENST00000557275 TRIM35Q9UPQ4 493 aa10.15□□□□□ -0.79
SYNE3-205ENST00000557275 TAOK1Q7L7X3 1001 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 HYPKQ9NX55 129 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 GOLGA4Q13439 2230 aaKnown RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 MPHOSPH6Q99547 160 aaKnown RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 RAI14Q9P0K7 980 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 HDAC9Q9UKV0 1011 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 TRIM7Q9C029 511 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 PRKRIP1Q9H875 184 aaPredicted RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 RPGRIP1LQ68CZ1 1315 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 PPM1FP49593 454 aaPredicted RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 RGS22Q8NE09 1264 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 TBC1D5Q92609 795 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 RAPGEF4Q8WZA2 1011 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 MACROD2A1Z1Q3 448 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 EIF2S2P20042 333 aaKnown RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 EXOC6Q8TAG9 804 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 HAUS2Q9NVX0 235 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 A0A087WZG4 1122 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 CLUL1Q15846 466 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 ZMAT2Q96NC0 199 aaKnown RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 DDX19AQ9NUU7 478 aaKnown RBP10.14□□□□□ -0.79
SYNE3-205ENST00000557275 TSPYL4Q9UJ04 414 aa10.14□□□□□ -0.79
SYNE3-205ENST00000557275 MAP3K21Q5TCX8 1036 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 PUS7Q96PZ0 661 aaKnown RBP10.13□□□□□ -0.79
SYNE3-205ENST00000557275 CARMIL1Q5VZK9 1371 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 CCDC82Q8N4S0 544 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 STRN4Q9NRL3 753 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 MTUS1Q9ULD2 1270 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 GTF2F1P35269 517 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE3-205ENST00000557275 TTC39AQ5SRH9 613 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 LMBR1Q8WVP7 490 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 STX1AQ16623 288 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 OTUD6BQ8N6M0 293 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 GAS2L2Q8NHY3 880 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 UBE2Q2Q8WVN8 375 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 HVCN1Q96D96 273 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 KLHL10Q6JEL2 608 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 EIF3DO15371 548 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE3-205ENST00000557275 MSANTD4Q8NCY6 345 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 JADE2Q9NQC1 790 aa10.13□□□□□ -0.79
SYNE3-205ENST00000557275 URI1O94763 535 aaPredicted RBP10.13□□□□□ -0.79
SYNE3-205ENST00000557275 DZIP1Q86YF9 867 aaKnown RBP10.13□□□□□ -0.79
SYNE3-205ENST00000557275 GAS8O95995 478 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 WHAMMP3Q1A5X7 153 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 NUP133Q8WUM0 1156 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 SEC62Q99442 399 aaKnown RBP10.12□□□□□ -0.79
SYNE3-205ENST00000557275 RFC1P35251 1148 aaPredicted RBP10.12□□□□□ -0.79
SYNE3-205ENST00000557275 RASSF2P50749 326 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 ZNF365Q70YC5 407 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 CAPZA3Q96KX2 299 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 CCDC94Q9BW85 323 aaPredicted RBP10.12□□□□□ -0.79
SYNE3-205ENST00000557275 RMND1Q9NWS8 449 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 TNNT1P13805 278 aa10.12□□□□□ -0.79
SYNE3-205ENST00000557275 TDRD12Q587J7 1177 aaKnown RBP10.12□□□□□ -0.79
SYNE3-205ENST00000557275 TXNDC16Q9P2K2 825 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms