RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	CTDSPL2	Q05D32	466 aa		7.66	□□□□□ -1.18
SCFD1-223	ENST00000557076	SLC10A4	Q96EP9	437 aa		7.66	□□□□□ -1.18
SCFD1-223	ENST00000557076	ARHGAP9	Q9BRR9	750 aa		7.66	□□□□□ -1.18
SCFD1-223	ENST00000557076	FKBPL	Q9UIM3	349 aa		7.66	□□□□□ -1.18
SCFD1-223	ENST00000557076	SYCP2	Q9BX26	1530 aa		7.66	□□□□□ -1.18
SCFD1-223	ENST00000557076	PPFIA3	O75145	1194 aa		7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	SKIV2L	Q15477	1246 aa	Known RBP	7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	CCDC18	Q5T9S5	1454 aa		7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	MEX3C	Q5U5Q3	659 aa	Known RBP	7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	RNF17	Q9BXT8	1623 aa	Known RBP	7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	MBD5	Q9P267	1494 aa		7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	DNMT3L	Q9UJW3	386 aa		7.65	□□□□□ -1.18
SCFD1-223	ENST00000557076	POLR1A	O95602	1720 aa	Predicted RBP	7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	SCAF11	Q99590	1463 aa	Known RBP	7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	TSPY4	P0CV99	314 aa		7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	TSPY10	P0CW01	314 aa		7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	DHX9	Q08211	1270 aa	Known RBP	7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	SH3D19	Q5HYK7	790 aa		7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	ZBTB33	Q86T24	672 aa		7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	STRCP1	A6NGW2	1772 aa		7.64	□□□□□ -1.19
SCFD1-223	ENST00000557076	TTLL8	A6PVC2	850 aa		7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076		Q6ZVU0	165 aa		7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076	LRRN4	Q8WUT4	740 aa		7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076	DDRGK1	Q96HY6	314 aa		7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076	KCTD15	Q96SI1	283 aa	Predicted RBP	7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076	IQGAP1	P46940	1657 aa		7.63	□□□□□ -1.19
SCFD1-223	ENST00000557076	PPP2R2D	Q66LE6	453 aa		7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	PNMA1	Q8ND90	353 aa		7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	QTRT2	Q9H974	415 aa	Known RBP	7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	GPSM3	Q9Y4H4	160 aa		7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	SYNM	O15061	1565 aa		7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	INO80	Q9ULG1	1556 aa	Predicted RBP	7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	CDK12	Q9NYV4	1490 aa	Predicted RBP	7.62	□□□□□ -1.19
SCFD1-223	ENST00000557076	FGD6	Q6ZV73	1430 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	SPINT1	O43278	529 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	RBM6	P78332	1123 aa	Known RBP	7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	PTK2	Q05397	1052 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	SLC26A8	Q96RN1	970 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	ARHGAP23	Q9P227	1491 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	CDC42BPA	Q5VT25	1732 aa		7.61	□□□□□ -1.19
SCFD1-223	ENST00000557076	MSH6	P52701	1360 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	TMEM2	Q9UHN6	1383 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	NR6A1	Q15406	480 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	CCDC125	Q86Z20	511 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	NCOA2	Q15596	1464 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	LRRC9	Q6ZRR7	1453 aa		7.6	□□□□□ -1.19
SCFD1-223	ENST00000557076	SLIT1	O75093	1534 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	PTS	Q03393	145 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	CBLB	Q13191	982 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	IDI1	Q13907	227 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	KDM4C	Q9H3R0	1056 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	C19orf44	Q9H6X5	657 aa		7.59	□□□□□ -1.19
SCFD1-223	ENST00000557076	MTUS2	Q5JR59	1369 aa		7.59	□□□□□ -1.2
SCFD1-223	ENST00000557076	AFF2	P51816	1311 aa		7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	ADGB	Q8N7X0	1667 aa		7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	NBPF20	Q3BBV1	942 aa		7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	INTS6L	Q5JSJ4	861 aa	Known RBP	7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	NGLY1	Q96IV0	654 aa		7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	NCOA3	Q9Y6Q9	1424 aa		7.58	□□□□□ -1.2
SCFD1-223	ENST00000557076	ERVK-7	P63135	1459 aa		7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	AP1G2	O75843	785 aa		7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	PROCA1	Q8NCQ7	364 aa	Predicted RBP	7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	NANOS1	Q8WY41	292 aa	Known RBP	7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	PRDM15	P57071	1507 aa	Predicted RBP	7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	ROBO1	Q9Y6N7	1651 aa		7.57	□□□□□ -1.2
SCFD1-223	ENST00000557076	LRP6	O75581	1613 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	SETD1A	O15047	1707 aa	Known RBP	7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	ARHGAP31	Q2M1Z3	1444 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	FIGNL2	A6NMB9	653 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	ATF3	P18847	181 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	ADAM32	Q8TC27	787 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	LRRC59	Q96AG4	307 aa	Known RBP	7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	FAM117A	Q9C073	453 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	GPBP1L1	Q9HC44	474 aa	Predicted RBP	7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	TBX22	Q9Y458	520 aa		7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	ZC3H13	Q5T200	1668 aa	Known RBP	7.56	□□□□□ -1.2
SCFD1-223	ENST00000557076	FYCO1	Q9BQS8	1478 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	CCDC155	Q8N6L0	562 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	BCAN	Q96GW7	911 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	OCSTAMP	Q9BR26	566 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	SLC52A1	Q9NWF4	448 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	LRRIQ1	Q96JM4	1722 aa		7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	XIRP1	Q702N8	1843 aa	Known RBP	7.55	□□□□□ -1.2
SCFD1-223	ENST00000557076	ABCC3	O15438	1527 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	MAP3K1	Q13233	1512 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	SLC35F4	A4IF30	521 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	USP17L8	P0C7I0	530 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	BRINP3	Q76B58	766 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	C8orf37	Q96NL8	207 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	ATAD2	Q6PL18	1390 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	CCDC141	Q6ZP82	1450 aa		7.54	□□□□□ -1.2
SCFD1-223	ENST00000557076	RELB	Q01201	579 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	KRT76	Q01546	638 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	KCNMA1	Q12791	1236 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	C14orf37	Q86TY3	774 aa		7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	GPR161	Q8N6U8	529 aa	Known RBP	7.53	□□□□□ -1.2
SCFD1-223	ENST00000557076	AGBL1	Q96MI9	1066 aa		7.53	□□□□□ -1.2

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