RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 TAF1LQ8IZX4 1826 aa12.55□□□□□ -0.4
TMEM260-213ENST00000556929 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-213ENST00000556929 PLSCR1O15162 318 aa12.54□□□□□ -0.4
TMEM260-213ENST00000556929 C8orf58Q8NAV2 365 aa12.54□□□□□ -0.4
TMEM260-213ENST00000556929 COL5A3P25940 1745 aaPredicted RBP12.54□□□□□ -0.4
TMEM260-213ENST00000556929 LOC102724428A0A0B4J2F2 783 aa12.53□□□□□ -0.4
TMEM260-213ENST00000556929 GIGYF1O75420 1035 aaPredicted RBP12.53□□□□□ -0.4
TMEM260-213ENST00000556929 CENPBP07199 599 aaPredicted RBP12.53□□□□□ -0.4
TMEM260-213ENST00000556929 ATP6V1AP38606 617 aa12.53□□□□□ -0.4
TMEM260-213ENST00000556929 SIK1P57059 783 aa12.53□□□□□ -0.4
TMEM260-213ENST00000556929 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
TMEM260-213ENST00000556929 BAG6P46379 1132 aa12.52□□□□□ -0.41
TMEM260-213ENST00000556929 KRT24Q2M2I5 525 aa12.52□□□□□ -0.41
TMEM260-213ENST00000556929 TSPYL6Q8N831 410 aa12.52□□□□□ -0.41
TMEM260-213ENST00000556929 CCNL1Q9UK58 526 aaPredicted RBP12.52□□□□□ -0.41
TMEM260-213ENST00000556929 VAMP4O75379 141 aa12.51□□□□□ -0.41
TMEM260-213ENST00000556929 STARD3NLO95772 234 aa12.51□□□□□ -0.41
TMEM260-213ENST00000556929 EIF2S2P20042 333 aaKnown RBP12.51□□□□□ -0.41
TMEM260-213ENST00000556929 SLC27A3Q5K4L6 730 aa12.51□□□□□ -0.41
TMEM260-213ENST00000556929 HDGFL1Q5TGJ6 251 aa12.51□□□□□ -0.41
TMEM260-213ENST00000556929 CCDC30Q5VVM6 783 aa12.5□□□□□ -0.41
TMEM260-213ENST00000556929 POTEHQ6S545 545 aa12.5□□□□□ -0.41
TMEM260-213ENST00000556929 DNAJC10Q8IXB1 793 aa12.5□□□□□ -0.41
TMEM260-213ENST00000556929 USP16Q9Y5T5 823 aa12.5□□□□□ -0.41
TMEM260-213ENST00000556929 RREB1Q92766 1687 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 PRAMEF22A3QJZ6 481 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 TXNRD1Q16881 649 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 SLC4A9Q96Q91 983 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 STK31Q9BXU1 1019 aa12.49□□□□□ -0.41
TMEM260-213ENST00000556929 C4BP0C0L5 1744 aa12.48□□□□□ -0.41
TMEM260-213ENST00000556929 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
TMEM260-213ENST00000556929 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
TMEM260-213ENST00000556929 AKT1S1Q96B36 256 aa12.48□□□□□ -0.41
TMEM260-213ENST00000556929 DBF4Q9UBU7 674 aaPredicted RBP12.48□□□□□ -0.41
TMEM260-213ENST00000556929 CYP19A1P11511 503 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-213ENST00000556929 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
TMEM260-213ENST00000556929 ITPK1Q13572 414 aa12.47□□□□□ -0.41
TMEM260-213ENST00000556929 RCAN3Q9UKA8 241 aa12.47□□□□□ -0.41
TMEM260-213ENST00000556929 EP400Q96L91 3159 aa12.47□□□□□ -0.41
TMEM260-213ENST00000556929 MYH14Q7Z406 1995 aaKnown RBP12.47□□□□□ -0.41
TMEM260-213ENST00000556929 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.41
TMEM260-213ENST00000556929 EZH2Q15910 746 aaKnown RBP12.46□□□□□ -0.41
TMEM260-213ENST00000556929 ILDR2Q71H61 639 aa12.46□□□□□ -0.41
TMEM260-213ENST00000556929 NPM2Q86SE8 214 aaKnown RBP12.46□□□□□ -0.41
TMEM260-213ENST00000556929 UPF1Q92900 1129 aaKnown RBP eCLIP12.46□□□□□ -0.41
TMEM260-213ENST00000556929 CAMKK2Q96RR4 588 aa12.46□□□□□ -0.41
TMEM260-213ENST00000556929 DDX21Q9NR30 783 aaKnown RBP eCLIP12.46□□□□□ -0.41
TMEM260-213ENST00000556929 SMC4Q9NTJ3 1288 aa12.46□□□□□ -0.41
TMEM260-213ENST00000556929 NUP188Q5SRE5 1749 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 CNTNAP4Q9C0A0 1308 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 CRKLP46109 303 aaKnown RBP12.45□□□□□ -0.42
TMEM260-213ENST00000556929 KCNQ4P56696 695 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 MKRN4PQ13434 485 aaPredicted RBP12.45□□□□□ -0.42
TMEM260-213ENST00000556929 RC3H1Q5TC82 1133 aaKnown RBP12.45□□□□□ -0.42
TMEM260-213ENST00000556929 PROM2Q8N271 834 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 LINC00116Q8NCU8 138 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 SSH1Q8WYL5 1049 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 LRRC4BQ9NT99 713 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 CCDC87Q9NVE4 849 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 HYPKQ9NX55 129 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 CHPF2Q9P2E5 772 aa12.45□□□□□ -0.42
TMEM260-213ENST00000556929 UBR3Q6ZT12 1888 aa12.44□□□□□ -0.42
TMEM260-213ENST00000556929 TCERG1O14776 1098 aaKnown RBP12.44□□□□□ -0.42
TMEM260-213ENST00000556929 A1BGP04217 495 aa12.44□□□□□ -0.42
TMEM260-213ENST00000556929 MYL6BP14649 208 aa12.44□□□□□ -0.42
TMEM260-213ENST00000556929 CANXP27824 592 aaKnown RBP12.44□□□□□ -0.42
TMEM260-213ENST00000556929 DEFB132Q7Z7B7 95 aa12.44□□□□□ -0.42
TMEM260-213ENST00000556929 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
TMEM260-213ENST00000556929 AK7Q96M32 723 aa12.44□□□□□ -0.42
TMEM260-213ENST00000556929 KIF16BQ96L93 1317 aa12.43□□□□□ -0.42
TMEM260-213ENST00000556929 IL6STP40189 918 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-213ENST00000556929 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-213ENST00000556929 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-213ENST00000556929 BCL2L13Q9BXK5 485 aa12.43□□□□□ -0.42
TMEM260-213ENST00000556929 ZBTB1Q9Y2K1 713 aa12.43□□□□□ -0.42
TMEM260-213ENST00000556929 QSER1Q2KHR3 1735 aa12.42□□□□□ -0.42
TMEM260-213ENST00000556929 BCAR3O75815 825 aa12.42□□□□□ -0.42
TMEM260-213ENST00000556929 PDIA6Q15084 440 aa12.42□□□□□ -0.42
TMEM260-213ENST00000556929 INTS5Q6P9B9 1019 aaKnown RBP12.42□□□□□ -0.42
TMEM260-213ENST00000556929 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
TMEM260-213ENST00000556929 TUBGCP6Q96RT7 1819 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 A0A087WZG4 1122 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 NBPF26B4DH59 902 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 GNPATO15228 680 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 IPO8O15397 1037 aaKnown RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 RPS6KA4O75676 772 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 DDX58O95786 925 aaKnown RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 ANXA1P04083 346 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 PIP4K2AP48426 406 aaPredicted RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 NBPF14Q5TI25 921 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 NBPF10Q6P3W6 841 aaKnown RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 NBPF15Q8N660 670 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 PHAXQ9H814 394 aaKnown RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 ZNF330Q9Y3S2 320 aaPredicted RBP12.41□□□□□ -0.42
TMEM260-213ENST00000556929 ARFGEF2Q9Y6D5 1785 aa12.41□□□□□ -0.42
TMEM260-213ENST00000556929 PTPRCP08575 1304 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 NUP98P52948 1817 aa12.4□□□□□ -0.42
TMEM260-213ENST00000556929 AIMP1Q12904 312 aaKnown RBP12.4□□□□□ -0.42
TMEM260-213ENST00000556929 FLIIQ13045 1269 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms