RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 USPL1Q5W0Q7 1092 aa24.8■■□□□ 1.56
VIPAS39-209ENST00000556909 COL15A1P39059 1388 aa24.8■■□□□ 1.56
VIPAS39-209ENST00000556909 ZPR1O75312 459 aa24.79■■□□□ 1.56
VIPAS39-209ENST00000556909 TM4SF1P30408 202 aa24.79■■□□□ 1.56
VIPAS39-209ENST00000556909 DALRD3Q5D0E6 543 aaKnown RBP24.78■■□□□ 1.56
VIPAS39-209ENST00000556909 CHRNA5P30532 468 aa24.77■■□□□ 1.56
VIPAS39-209ENST00000556909 ZBTB1Q9Y2K1 713 aa24.77■■□□□ 1.56
VIPAS39-209ENST00000556909 C9orf131Q5VYM1 1079 aa24.76■■□□□ 1.55
VIPAS39-209ENST00000556909 NMRK2Q9NPI5 230 aa24.75■■□□□ 1.55
VIPAS39-209ENST00000556909 NARFQ9UHQ1 456 aa24.75■■□□□ 1.55
VIPAS39-209ENST00000556909 TOMM70O94826 608 aa24.74■■□□□ 1.55
VIPAS39-209ENST00000556909 VSIG10Q8N0Z9 540 aa24.74■■□□□ 1.55
VIPAS39-209ENST00000556909 NPC1L1Q9UHC9 1359 aa24.74■■□□□ 1.55
VIPAS39-209ENST00000556909 SCN7AQ01118 1682 aa24.74■■□□□ 1.55
VIPAS39-209ENST00000556909 TNRC6CQ9HCJ0 1690 aaKnown RBP24.74■■□□□ 1.55
VIPAS39-209ENST00000556909 NFIXQ14938 502 aa24.73■■□□□ 1.55
VIPAS39-209ENST00000556909 BCL2L12Q9HB09 334 aa24.72■■□□□ 1.55
VIPAS39-209ENST00000556909 WDR90Q96KV7 1748 aa24.71■■□□□ 1.55
VIPAS39-209ENST00000556909 RNF181Q9P0P0 153 aa24.7■■□□□ 1.54
VIPAS39-209ENST00000556909 ANKRD31Q8N7Z5 1873 aa24.7■■□□□ 1.54
VIPAS39-209ENST00000556909 CCDC88AQ3V6T2 1871 aa24.69■■□□□ 1.54
VIPAS39-209ENST00000556909 APLP1P51693 650 aa24.69■■□□□ 1.54
VIPAS39-209ENST00000556909 TTC5Q8N0Z6 440 aa24.69■■□□□ 1.54
VIPAS39-209ENST00000556909 U2SURPO15042 1029 aaKnown RBP24.68■■□□□ 1.54
VIPAS39-209ENST00000556909 CANXP27824 592 aaKnown RBP24.68■■□□□ 1.54
VIPAS39-209ENST00000556909 IFFO2Q5TF58 517 aa24.68■■□□□ 1.54
VIPAS39-209ENST00000556909 TIAM2Q8IVF5 1701 aa24.68■■□□□ 1.54
VIPAS39-209ENST00000556909 CARMIL3Q8ND23 1372 aa24.67■■□□□ 1.54
VIPAS39-209ENST00000556909 CNGB1Q14028 1251 aaPredicted RBP24.67■■□□□ 1.54
VIPAS39-209ENST00000556909 STARD3NLO95772 234 aa24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 SERPINB2P05120 415 aa24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 IL17REQ8NFR9 667 aa24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 GAS2L2Q8NHY3 880 aa24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 COL11A2P13942 1736 aaPredicted RBP24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 HEG1Q9ULI3 1381 aa24.66■■□□□ 1.54
VIPAS39-209ENST00000556909 KDM2BQ8NHM5 1336 aa24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 GNAT3A8MTJ3 354 aa24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 EIF5P55010 431 aaKnown RBP24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 TEFQ10587 303 aa24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 RBM46Q8TBY0 533 aaKnown RBP24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 ZNF496Q96IT1 587 aaPredicted RBP24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 BCORQ6W2J9 1755 aa24.65■■□□□ 1.54
VIPAS39-209ENST00000556909 RASSF7Q02833 373 aa24.64■■□□□ 1.54
VIPAS39-209ENST00000556909 ZNF790Q6PG37 636 aa24.64■■□□□ 1.54
VIPAS39-209ENST00000556909 C16orf71Q8IYS4 520 aaPredicted RBP24.63■■□□□ 1.53
VIPAS39-209ENST00000556909 A0A087WZG4 1122 aa24.62■■□□□ 1.53
VIPAS39-209ENST00000556909 CEMIPQ8WUJ3 1361 aa24.62■■□□□ 1.53
VIPAS39-209ENST00000556909 BICDL1Q6ZP65 573 aa24.61■■□□□ 1.53
VIPAS39-209ENST00000556909 C2CD5Q86YS7 1000 aa24.61■■□□□ 1.53
VIPAS39-209ENST00000556909 ZC3H4Q9UPT8 1303 aaKnown RBP24.61■■□□□ 1.53
VIPAS39-209ENST00000556909 CACNA1SQ13698 1873 aa24.6■■□□□ 1.53
VIPAS39-209ENST00000556909 TTLL6Q8N841 843 aa24.6■■□□□ 1.53
VIPAS39-209ENST00000556909 PRELPP51888 382 aa24.59■■□□□ 1.53
VIPAS39-209ENST00000556909 TBC1D9BQ66K14 1250 aa24.59■■□□□ 1.53
VIPAS39-209ENST00000556909 DNAJC5GQ8N7S2 189 aa24.59■■□□□ 1.53
VIPAS39-209ENST00000556909 TEX13AQ9BXU3 409 aaPredicted RBP24.59■■□□□ 1.53
VIPAS39-209ENST00000556909 DICER1Q9UPY3 1922 aaKnown RBP24.59■■□□□ 1.53
VIPAS39-209ENST00000556909 FER1L6Q2WGJ9 1857 aa24.58■■□□□ 1.53
VIPAS39-209ENST00000556909 FMNL2Q96PY5 1086 aa24.58■■□□□ 1.53
VIPAS39-209ENST00000556909 RRAGCQ9HB90 399 aa24.58■■□□□ 1.53
VIPAS39-209ENST00000556909 H0YIN7 160 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 LMNB1P20700 586 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 PRKAR2BP31323 418 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 FSTL1Q12841 308 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 PHACTR3Q96KR7 559 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 RSPH6AQ9H0K4 717 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 ZNF330Q9Y3S2 320 aaPredicted RBP24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 ARFGEF2Q9Y6D5 1785 aa24.57■■□□□ 1.52
VIPAS39-209ENST00000556909 IL6STP40189 918 aaPredicted RBP24.56■■□□□ 1.52
VIPAS39-209ENST00000556909 TBC1D2BQ9UPU7 963 aa24.56■■□□□ 1.52
VIPAS39-209ENST00000556909 CFAP53Q96M91 514 aa24.55■■□□□ 1.52
VIPAS39-209ENST00000556909 NFKBIEO00221 500 aa24.54■■□□□ 1.52
VIPAS39-209ENST00000556909 KCNQ3O43525 872 aa24.54■■□□□ 1.52
VIPAS39-209ENST00000556909 A1BGP04217 495 aa24.54■■□□□ 1.52
VIPAS39-209ENST00000556909 PRR5LQ6MZQ0 368 aa24.54■■□□□ 1.52
VIPAS39-209ENST00000556909 BTBD11A6QL63 1104 aa24.53■■□□□ 1.52
VIPAS39-209ENST00000556909 CAMTA2O94983 1202 aa24.52■■□□□ 1.52
VIPAS39-209ENST00000556909 HTRA3P83110 453 aa24.52■■□□□ 1.52
VIPAS39-209ENST00000556909 BRIP1Q9BX63 1249 aa24.52■■□□□ 1.52
VIPAS39-209ENST00000556909 GLTPD2A6NH11 291 aa24.51■■□□□ 1.51
VIPAS39-209ENST00000556909 PDE6BP35913 854 aa24.51■■□□□ 1.51
VIPAS39-209ENST00000556909 CCDC24Q8N4L8 307 aa24.51■■□□□ 1.51
VIPAS39-209ENST00000556909 PDZRN3Q9UPQ7 1066 aa24.51■■□□□ 1.51
VIPAS39-209ENST00000556909 SLX4Q8IY92 1834 aa24.51■■□□□ 1.51
VIPAS39-209ENST00000556909 ZNF622Q969S3 477 aaKnown RBP eCLIP24.5■■□□□ 1.51
VIPAS39-209ENST00000556909 NPM2Q86SE8 214 aaKnown RBP24.49■■□□□ 1.51
VIPAS39-209ENST00000556909 SMC1BQ8NDV3 1235 aa24.49■■□□□ 1.51
VIPAS39-209ENST00000556909 LAMB4A4D0S4 1761 aa24.49■■□□□ 1.51
VIPAS39-209ENST00000556909 PPP2R1AP30153 589 aa24.48■■□□□ 1.51
VIPAS39-209ENST00000556909 CNBD1Q8NA66 436 aa24.48■■□□□ 1.51
VIPAS39-209ENST00000556909 SETDB2Q96T68 719 aa24.48■■□□□ 1.51
VIPAS39-209ENST00000556909 NUDCQ9Y266 331 aa24.48■■□□□ 1.51
VIPAS39-209ENST00000556909 DLG5Q8TDM6 1919 aa24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 U2AF1L5P0DN76 240 aaPredicted RBP24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 U2AF1Q01081 240 aaKnown RBP eCLIP24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 DZIP3Q86Y13 1208 aaKnown RBP24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 KLRG1Q96E93 195 aa24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 USP16Q9Y5T5 823 aa24.47■■□□□ 1.51
VIPAS39-209ENST00000556909 PRAMEF22A3QJZ6 481 aa24.46■■□□□ 1.51
VIPAS39-209ENST00000556909 C21orf2O43822 256 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms