RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MCM2P49736 904 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 PIK3R4Q99570 1358 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 WDR33Q9C0J8 1336 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 ARAP3Q8WWN8 1544 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 FSD2A1L4K1 749 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 LARP1BQ659C4 914 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 MYD88Q99836 296 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 LMBRD1Q9NUN5 540 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 PTPRMP28827 1452 aa14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 SETD1BQ9UPS6 1966 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-211ENST00000556726 PNPLA6Q8IY17 1366 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 HCLS1P14317 486 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 CLCN1P35523 988 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 DDX17Q92841 729 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 TMEM63CQ9P1W3 806 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 NEO1Q92859 1461 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 USP48Q86UV5 1035 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 ORAI2Q96SN7 254 aa14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-211ENST00000556726 RAB11FIP3O75154 756 aa14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 GIMAP6Q6P9H5 292 aa14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 EDC3Q96F86 508 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 ERBB4Q15303 1308 aa14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 MROH1Q8NDA8 1641 aa14.56□□□□□ -0.08
CCDC88C-211ENST00000556726 FAM177BA6PVY3 158 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 AK2P54819 239 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 ATP6V1DQ9Y5K8 247 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 NEXMIFQ5QGS0 1516 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 GLRX3O76003 335 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 CKAP2LQ8IYA6 745 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 STK11IPQ8N1F8 1099 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 NRXN1Q9ULB1 1477 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 GPT2Q8TD30 523 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 SYTL4Q96C24 671 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 SOS1Q07889 1333 aaPredicted RBP14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 ALKQ9UM73 1620 aa14.55□□□□□ -0.08
CCDC88C-211ENST00000556726 ANKLE2Q86XL3 938 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 GJB2P29033 226 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 GUCY1B3Q02153 619 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 ANKRD24Q8TF21 1146 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 DBF4Q9UBU7 674 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 NLRP1Q9C000 1473 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 PROSER3Q2NL68 480 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 ZNF592Q92610 1267 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 ISY1Q9ULR0 285 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 TMEM2Q9UHN6 1383 aa14.54□□□□□ -0.08
CCDC88C-211ENST00000556726 PLEKHG3A1L390 1219 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 DNM1Q05193 864 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 UBE3BQ7Z3V4 1068 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 RAB11FIP4Q86YS3 637 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 PPP6R1Q9UPN7 881 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 SETBP1Q9Y6X0 1596 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 BLOC1S2Q6QNY1 142 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 CHMP4AQ9BY43 222 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 STRN4Q9NRL3 753 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 TOMM22Q9NS69 142 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 ECHDC1Q9NTX5 307 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 LIMCH1Q9UPQ0 1083 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 STX6O43752 255 aa14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 BRPF1P55201 1214 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 C17orf53Q8N3J3 647 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-211ENST00000556726 WASHC4Q2M389 1173 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 RNF20Q5VTR2 975 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 FAM227BQ96M60 508 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 HDAC5Q9UQL6 1122 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 VWDEQ8N2E2 1590 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 CPS1P31327 1500 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 ARHGEF40Q8TER5 1519 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 A2ML1A8K2U0 1454 aa14.52□□□□□ -0.08
CCDC88C-211ENST00000556726 RASEFQ8IZ41 740 aa14.52□□□□□ -0.09
CCDC88C-211ENST00000556726 MAP3K5Q99683 1374 aa14.52□□□□□ -0.09
CCDC88C-211ENST00000556726 TTC21AQ8NDW8 1320 aa14.52□□□□□ -0.09
CCDC88C-211ENST00000556726 DDX46Q7L014 1031 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-211ENST00000556726 TTC12Q9H892 705 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-211ENST00000556726 CD163L1Q9NR16 1453 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 PTCH1Q13635 1447 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 FRMPD1Q5SYB0 1578 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 COPS6Q7L5N1 327 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 NFATC2IPQ8NCF5 419 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 GNL2Q13823 731 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 SF3A1Q15459 793 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 CCDC39Q9UFE4 941 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 KAT6BQ8WYB5 2073 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 UQCRHLA0A096LP55 91 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 UQCRHP07919 91 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 CHAF1AQ13111 956 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 LRSAM1Q6UWE0 723 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 XAGE3Q8WTP9 111 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 FMNL2Q96PY5 1086 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 SNRKQ9NRH2 765 aa14.51□□□□□ -0.09
CCDC88C-211ENST00000556726 APPP05067 770 aa14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 FKBP4Q02790 459 aaKnown RBP eCLIP14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 IL25Q9H293 177 aa14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 RBM8AQ9Y5S9 174 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 LMTK2Q8IWU2 1503 aa14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 SBNO1A3KN83 1393 aa14.5□□□□□ -0.09
CCDC88C-211ENST00000556726 GCP02774 474 aa14.49□□□□□ -0.09
CCDC88C-211ENST00000556726 TATP17735 454 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms